Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:17:02 (3761864): wrapper (7.7.26015): starting
20:17:02 (3761864): wrapper: running run_atlas (--nthreads 2)
[2025-10-18 20:17:02] Arguments: --nthreads 2
[2025-10-18 20:17:02] Threads: 2
[2025-10-18 20:17:02] Checking for CVMFS
[2025-10-18 20:17:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 20:17:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 20:17:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 20:17:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 20:17:02] 2.9.2.0 2907177 3933 61244 151861 0 57 28498163 36864000 0 130560 0 2223502 99.987 145637 3015 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 20:17:02] CVMFS is ok
[2025-10-18 20:17:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 20:17:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 20:17:02] Further information can be found at the LHC@home message board.
[2025-10-18 20:17:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 20:17:02] Checking for apptainer binary...
[2025-10-18 20:17:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 20:17:02] Running /usr/bin/apptainer --version
[2025-10-18 20:17:02] apptainer version 1.4.1-1.1
[2025-10-18 20:17:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 20:17:02] madmaxA275
[2025-10-18 20:17:02] apptainer works
[2025-10-18 20:17:02] Set ATHENA_PROC_NUMBER=2
[2025-10-18 20:17:02] Set ATHENA_CORE_NUMBER=2
[2025-10-18 20:17:02] Starting ATLAS job with PandaID=6848017389
[2025-10-18 20:17:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 22:34:32]  *** The last 200 lines of the pilot log: ***
[2025-10-18 22:34:32] 2025-10-18 20:33:28,421 | INFO     | overall cleanup function is called
[2025-10-18 22:34:32] 2025-10-18 20:33:29,427 | INFO     | --- collectZombieJob: --- 10, [3771971]
[2025-10-18 22:34:32] 2025-10-18 20:33:29,427 | INFO     | zombie collector waiting for pid 3771971
[2025-10-18 22:34:32] 2025-10-18 20:33:29,427 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 22:34:32] 2025-10-18 20:33:29,427 | INFO     | collected zombie processes
[2025-10-18 22:34:32] 2025-10-18 20:33:29,428 | INFO     | will attempt to kill all subprocesses of pid=3771971
[2025-10-18 22:34:32] 2025-10-18 20:33:29,461 | INFO     | process IDs to be killed: [3771971] (in reverse order)
[2025-10-18 22:34:32] 2025-10-18 20:33:29,480 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 22:34:32] 2025-10-18 20:33:29,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 22:34:32] 2025-10-18 20:33:29,481 | INFO     | did not find any defunct processes belonging to 3771971
[2025-10-18 22:34:32] 2025-10-18 20:33:29,481 | INFO     | did not find any defunct processes belonging to 3771971
[2025-10-18 22:34:32] 2025-10-18 20:33:29,481 | INFO     | ready for new job
[2025-10-18 22:34:32] 2025-10-18 20:33:29,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 22:34:32] 2025-10-18 20:33:29,482 | INFO     | ***************************************
[2025-10-18 22:34:32] 2025-10-18 20:33:29,482 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 22:34:32] 2025-10-18 20:33:29,482 | INFO     | ***************************************
[2025-10-18 22:34:32] 2025-10-18 20:33:29,482 | INFO     | 
[2025-10-18 22:34:32] 2025-10-18 20:33:29,482 | INFO     | architecture information:
[2025-10-18 22:34:32] 2025-10-18 20:33:29,482 | INFO     | executing command: cat /etc/os-release
[2025-10-18 22:34:32] 2025-10-18 20:33:29,490 | INFO     | cat /etc/os-release:
[2025-10-18 22:34:32] NAME="CentOS Linux"
[2025-10-18 22:34:32] VERSION="7 (Core)"
[2025-10-18 22:34:32] ID="centos"
[2025-10-18 22:34:32] ID_LIKE="rhel fedora"
[2025-10-18 22:34:32] VERSION_ID="7"
[2025-10-18 22:34:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 22:34:32] ANSI_COLOR="0;31"
[2025-10-18 22:34:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 22:34:32] HOME_URL="https://www.centos.org/"
[2025-10-18 22:34:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 22:34:32] 
[2025-10-18 22:34:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 22:34:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 22:34:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 22:34:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 22:34:32] 
[2025-10-18 22:34:32] 2025-10-18 20:33:29,490 | INFO     | ***************************************
[2025-10-18 22:34:32] 2025-10-18 20:33:29,994 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 22:34:32] 2025-10-18 20:33:30,005 | INFO     | sufficient remaining disk space (255730909184 B)
[2025-10-18 22:34:32] 2025-10-18 20:33:30,005 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 22:34:32] 2025-10-18 20:33:30,005 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 22:34:32] 2025-10-18 20:33:30,005 | INFO     | update_server=False
[2025-10-18 22:34:32] 2025-10-18 20:33:30,006 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 22:34:32] 2025-10-18 20:33:30,006 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 22:34:32] 2025-10-18 20:33:30,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 22:34:32] 2025-10-18 20:33:30,006 | INFO     | aborting loop
[2025-10-18 22:34:32] 2025-10-18 20:33:30,268 | INFO     | all job control threads have been joined
[2025-10-18 22:34:32] 2025-10-18 20:33:30,404 | INFO     | all data control threads have been joined
[2025-10-18 22:34:32] 2025-10-18 20:33:30,505 | INFO     | all payload control threads have been joined
[2025-10-18 22:34:32] 2025-10-18 20:33:31,006 | INFO     | [job] queue monitor thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,010 | INFO     | [job] job monitor thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,011 | INFO     | [job] retrieve thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,042 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,232 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 22:34:32] 2025-10-18 20:33:31,274 | INFO     | [job] control thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,335 | INFO     | [data] copytool_in thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,410 | INFO     | [data] control thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,511 | INFO     | [payload] control thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,773 | INFO     | [payload] validate_post thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 22:34:32] 2025-10-18 20:33:31,870 | INFO     | [job] validate thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,900 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:31,912 | INFO     | [payload] failed_post thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:32,083 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:33,236 | INFO     | [data] copytool_out thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:35,781 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:40,710 | INFO     | job.realtimelogging is not enabled
[2025-10-18 22:34:32] 2025-10-18 20:33:41,716 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 22:34:32] 2025-10-18 20:33:59,997 | INFO     | PID=3765563 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 22:34:32] 2025-10-18 20:33:59,997 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 22:34:32] 2025-10-18 20:33:59,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 22:34:32] 2025-10-18 20:33:59,998 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 22:34:32] 2025-10-18 20:34:26,032 | INFO     | [monitor] cgroup control has ended
[2025-10-18 22:34:32] 2025-10-18 20:34:27,649 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140595890997056)>', '<ExcThread(monitor, started 140594814908160)>']
[2025-10-18 22:34:32] 2025-10-18 20:34:28,139 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 22:34:32] 2025-10-18 20:34:28,139 | INFO     | [monitor] control thread has ended
[2025-10-18 22:34:32] 2025-10-18 20:34:32,675 | INFO     | all workflow threads have been joined
[2025-10-18 22:34:32] 2025-10-18 20:34:32,675 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 22:34:32] 2025-10-18 20:34:32,676 | INFO     | traces error code: 0
[2025-10-18 22:34:32] 2025-10-18 20:34:32,676 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 22:34:32] 2025-10-18 20:34:32,719 [wrapper] ==== pilot stdout END ====
[2025-10-18 22:34:32] 2025-10-18 20:34:32,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 22:34:32] 2025-10-18 20:34:32,725 [wrapper] pilotpid: 3765563
[2025-10-18 22:34:32] 2025-10-18 20:34:32,727 [wrapper] Pilot exit status: 0
[2025-10-18 22:34:32] 2025-10-18 20:34:32,733 [wrapper] pandaids: 6848017389
[2025-10-18 22:34:32] 2025-10-18 20:34:32,746 [wrapper] cleanup supervisor_pilot 3788618 3765564
[2025-10-18 22:34:32] 2025-10-18 20:34:32,747 [wrapper] Test setup, not cleaning
[2025-10-18 22:34:32] 2025-10-18 20:34:32,749 [wrapper] apfmon messages muted
[2025-10-18 22:34:32] 2025-10-18 20:34:32,752 [wrapper] ==== wrapper stdout END ====
[2025-10-18 22:34:32] 2025-10-18 20:34:32,754 [wrapper] ==== wrapper stderr END ====
[2025-10-18 22:34:32]  *** Error codes and diagnostics ***
[2025-10-18 22:34:32]     "exeErrorCode": 0,
[2025-10-18 22:34:32]     "exeErrorDiag": "",
[2025-10-18 22:34:32]     "pilotErrorCode": 0,
[2025-10-18 22:34:32]     "pilotErrorDiag": "",
[2025-10-18 22:34:32]  *** Listing of results directory ***
[2025-10-18 22:34:32] total 433332
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc    557409 Oct 18 02:10 pilot3.tar.gz
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc      5112 Oct 18 02:15 queuedata.json
[2025-10-18 22:34:32] -rwx------ 1 boinc boinc     36292 Oct 18 02:17 runpilot2-wrapper.sh
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc       100 Oct 18 20:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 22:34:32] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 20:17 run_atlas
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc       105 Oct 18 20:17 job.xml
[2025-10-18 22:34:32] -rw-r--r-- 2 boinc boinc 227683206 Oct 18 20:17 EVNT.46771634._001530.pool.root.1
[2025-10-18 22:34:32] -rw-r--r-- 2 boinc boinc    569679 Oct 18 20:17 input.tar.gz
[2025-10-18 22:34:32] -rw-r--r-- 2 boinc boinc     15120 Oct 18 20:17 start_atlas.sh
[2025-10-18 22:34:32] drwxrwx--x 2 boinc boinc      4096 Oct 18 20:17 shared
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc         0 Oct 18 20:17 boinc_setup_complete
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc      6208 Oct 18 20:17 init_data.xml
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc         0 Oct 18 20:17 boinc_lockfile
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc      2557 Oct 18 20:17 pandaJob.out
[2025-10-18 22:34:32] -rw------- 1 boinc boinc    976750 Oct 18 20:17 agis_schedconf.cvmfs.json
[2025-10-18 22:34:32] -rw------- 1 boinc boinc   1560740 Oct 18 20:17 agis_ddmendpoints.agis.ALL.json
[2025-10-18 22:34:32] drwx------ 5 boinc boinc      4096 Oct 18 20:17 pilot3
[2025-10-18 22:34:32] -rw------- 1 boinc boinc 209268486 Oct 18 22:33 HITS.46771637._034564.pool.root.1
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc       529 Oct 18 22:33 boinc_task_state.xml
[2025-10-18 22:34:32] -rw------- 1 boinc boinc      1017 Oct 18 22:33 memory_monitor_summary.json
[2025-10-18 22:34:32] -rw------- 1 boinc boinc    272713 Oct 18 22:33 log.46771637._034564.job.log.tgz.1
[2025-10-18 22:34:32] -rw------- 1 boinc boinc      7765 Oct 18 22:33 heartbeat.json
[2025-10-18 22:34:32] -rw------- 1 boinc boinc        95 Oct 18 22:33 pilot_heartbeat.json
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc      8192 Oct 18 22:34 boinc_mmap_file
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc        27 Oct 18 22:34 wrapper_checkpoint.txt
[2025-10-18 22:34:32] -rw------- 1 boinc boinc      4824 Oct 18 22:34 pilotlog.txt
[2025-10-18 22:34:32] -rw------- 1 boinc boinc   1171377 Oct 18 22:34 log.46771637._034564.job.log.1
[2025-10-18 22:34:32] -rw------- 1 boinc boinc       357 Oct 18 22:34 output.list
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc       620 Oct 18 22:34 runtime_log
[2025-10-18 22:34:32] -rw------- 1 boinc boinc   1464320 Oct 18 22:34 result.tar.gz
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc      8797 Oct 18 22:34 runtime_log.err
[2025-10-18 22:34:32] -rw------- 1 boinc boinc       663 Oct 18 22:34 4bfNDm4o9T8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFUvNDmR4ADVo.diag
[2025-10-18 22:34:32] -rw-r--r-- 1 boinc boinc     10806 Oct 18 22:34 stderr.txt
[2025-10-18 22:34:32] HITS file was successfully produced:
[2025-10-18 22:34:32] -rw------- 1 boinc boinc 209268486 Oct 18 22:33 shared/HITS.pool.root.1
[2025-10-18 22:34:32]  *** Contents of shared directory: ***
[2025-10-18 22:34:32] total 428728
[2025-10-18 22:34:32] -rw-r--r-- 2 boinc boinc 227683206 Oct 18 20:17 ATLAS.root_0
[2025-10-18 22:34:32] -rw-r--r-- 2 boinc boinc    569679 Oct 18 20:17 input.tar.gz
[2025-10-18 22:34:32] -rw-r--r-- 2 boinc boinc     15120 Oct 18 20:17 start_atlas.sh
[2025-10-18 22:34:32] -rw------- 1 boinc boinc 209268486 Oct 18 22:33 HITS.pool.root.1
[2025-10-18 22:34:32] -rw------- 1 boinc boinc   1464320 Oct 18 22:34 result.tar.gz
22:34:34 (3761864): run_atlas exited; CPU time 15931.264631
22:34:34 (3761864): called boinc_finish(0)

</stderr_txt>
]]>

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