Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:21:32 (1062329): wrapper (7.7.26015): starting
10:21:32 (1062329): wrapper: running run_atlas (--nthreads 2)
[2025-10-18 10:21:32] Arguments: --nthreads 2
[2025-10-18 10:21:32] Threads: 2
[2025-10-18 10:21:32] Checking for CVMFS
[2025-10-18 10:21:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 10:21:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 10:21:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 10:21:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 10:21:33] 2.11.0.0 4067274 301 48820 151844 3 186 2875364 4194305 0 130560 0 3735243 99.999 10640 434 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-18 10:21:33] CVMFS is ok
[2025-10-18 10:21:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 10:21:33] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-18 10:21:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-18 10:21:33] Further information can be found at the LHC@home message board.
[2025-10-18 10:21:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 10:21:33] Checking for apptainer binary...
[2025-10-18 10:21:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 10:21:33] Running /usr/bin/apptainer --version
[2025-10-18 10:21:33] apptainer version 1.2.2-1.el8
[2025-10-18 10:21:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 10:21:34] bottom
[2025-10-18 10:21:34] apptainer works
[2025-10-18 10:21:34] Set ATHENA_PROC_NUMBER=2
[2025-10-18 10:21:34] Set ATHENA_CORE_NUMBER=2
[2025-10-18 10:21:34] Starting ATLAS job with PandaID=6849608851
[2025-10-18 10:21:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 10:28:15]  *** The last 200 lines of the pilot log: ***
[2025-10-18 10:28:15] 2025-10-18 08:27:42,707 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.267
[2025-10-18 10:28:15] 2025-10-18 08:27:42,720 | WARNING  | file does not exist either: /var/lib/boinc/slots/0/PanDA_Pilot-6849608851/memory_monitor_output.txt
[2025-10-18 10:28:15] 2025-10-18 08:27:42,721 | INFO     | memory summary dictionary not yet available
[2025-10-18 10:28:15] 2025-10-18 08:27:42,721 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 10:28:15] 2025-10-18 08:27:42,721 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | could have reported an average CPU frequency of 1899 MHz (4 samples)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | ..............................
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | . Timing measurements:
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | . get job = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | . initial setup = 2 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . payload setup = 8 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . stage-in = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . payload execution = 132 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . stage-out = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . log creation = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | ..............................
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-18 10:28:15] 2025-10-18 08:27:42,724 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/0/PanDA_Pilot-6849608851/pilotlog.txt
[2025-10-18 10:28:15] 2025-10-18 08:27:42,741 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-18 10:28:15] - Log from pilotlog.txt -
[2025-10-18 10:28:15] 2025-10-18 08:27:41,764 | INFO     | time since job start (349s) is within the limit (172800.0s)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,705 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-18 10:28:15] 2025-10-18 08:27:42,707 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.267
[2025-10-18 10:28:15] 2025-10-18 08:27:42,720 | WARNING  | file does not exist either: /var/lib/boinc/slots/0/PanDA_Pilot-6849608851/memory_monitor_output.txt
[2025-10-18 10:28:15] 2025-10-18 08:27:42,721 | INFO     | memory summary dictionary not yet available
[2025-10-18 10:28:15] 2025-10-18 08:27:42,721 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 10:28:15] 2025-10-18 08:27:42,721 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | could have reported an average CPU frequency of 1899 MHz (4 samples)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | ..............................
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | . Timing measurements:
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | . get job = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | . initial setup = 2 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . payload setup = 8 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . stage-in = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . payload execution = 132 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . stage-out = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . log creation = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | ..............................
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-18 10:28:15] 2025-10-18 08:27:42,724 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/0/PanDA_Pilot-6849608851/pilotlog.txt
[2025-10-18 10:28:15] 2025-10-18 08:27:42,742 | WARNING  | 
[2025-10-18 10:28:15] [begin log extracts]
[2025-10-18 10:28:15] - Log from pilotlog.txt -
[2025-10-18 10:28:15] 2025-10-18 08:27:41,764 | INFO     | time since job start (349s) is within the limit (172800.0s)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,705 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-18 10:28:15] 2025-10-18 08:27:42,707 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.267
[2025-10-18 10:28:15] 2025-10-18 08:27:42,720 | WARNING  | file does not exist either: /var/lib/boinc/slots/0/PanDA_Pilot-6849608851/memory_monitor_output.txt
[2025-10-18 10:28:15] 2025-10-18 08:27:42,721 | INFO     | memory summary dictionary not yet available
[2025-10-18 10:28:15] 2025-10-18 08:27:42,721 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 10:28:15] 2025-10-18 08:27:42,721 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | could have reported an average CPU frequency of 1899 MHz (4 samples)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | ..............................
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | . Timing measurements:
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | . get job = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,722 | INFO     | . initial setup = 2 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . payload setup = 8 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . stage-in = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . payload execution = 132 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . stage-out = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | . log creation = 0 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | ..............................
[2025-10-18 10:28:15] 2025-10-18 08:27:42,723 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-18 10:28:15] 2025-10-18 08:27:42,724 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/0/PanDA_Pilot-6849608851/pilotlog.txt
[2025-10-18 10:28:15] [end log extracts]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,742 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,743 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-18 10:28:15] 2025-10-18 08:27:42,864 | INFO     | 
[2025-10-18 10:28:15] 2025-10-18 08:27:42,864 | INFO     | job summary report
[2025-10-18 10:28:15] 2025-10-18 08:27:42,865 | INFO     | --------------------------------------------------
[2025-10-18 10:28:15] 2025-10-18 08:27:42,865 | INFO     | PanDA job id: 6849608851
[2025-10-18 10:28:15] 2025-10-18 08:27:42,865 | INFO     | task id: 46808902
[2025-10-18 10:28:15] 2025-10-18 08:27:42,865 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-18 10:24:26,449 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-18 10:28:15] 2025-10-18 08:27:42,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 10:28:15] 2025-10-18 08:27:42,865 | INFO     | pilot state: failed 
[2025-10-18 10:28:15] 2025-10-18 08:27:42,865 | INFO     | transexitcode: 65
[2025-10-18 10:28:15] 2025-10-18 08:27:42,865 | INFO     | exeerrorcode: 65
[2025-10-18 10:28:15] 2025-10-18 08:27:42,866 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,866 | INFO     | exitcode: 65
[2025-10-18 10:28:15] 2025-10-18 08:27:42,866 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,866 | INFO     | cpuconsumptiontime: 154 s
[2025-10-18 10:28:15] 2025-10-18 08:27:42,866 | INFO     | nevents: 0
[2025-10-18 10:28:15] 2025-10-18 08:27:42,866 | INFO     | neventsw: 0
[2025-10-18 10:28:15] 2025-10-18 08:27:42,866 | INFO     | pid: 1072455
[2025-10-18 10:28:15] 2025-10-18 08:27:42,867 | INFO     | pgrp: 1072455
[2025-10-18 10:28:15] 2025-10-18 08:27:42,867 | INFO     | corecount: 2
[2025-10-18 10:28:15] 2025-10-18 08:27:42,867 | INFO     | event service: False
[2025-10-18 10:28:15] 2025-10-18 08:27:42,867 | INFO     | sizes: {0: 2348795, 1: 2348795, 7: 2349085, 11: 2349113, 205: 2372391, 207: 2376686, 210: 2376870, 333: 2377036}
[2025-10-18 10:28:15] 2025-10-18 08:27:42,867 | INFO     | --------------------------------------------------
[2025-10-18 10:28:15] 2025-10-18 08:27:42,867 | INFO     | 
[2025-10-18 10:28:15] 2025-10-18 08:27:42,867 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-18 10:28:15] 2025-10-18 08:27:42,893 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,894 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,894 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,894 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,894 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,894 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,894 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,895 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,895 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,895 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,895 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,895 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,895 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,895 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,896 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,896 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,896 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,896 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,896 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,896 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 10:28:15] 2025-10-18 08:27:42,897 | INFO     | job 6849608851 has completed (purged errors)
[2025-10-18 10:28:15] 2025-10-18 08:27:42,897 | INFO     | overall cleanup function is called
[2025-10-18 10:28:15] 2025-10-18 08:27:43,904 | INFO     | --- collectZombieJob: --- 10, [1072455]
[2025-10-18 10:28:15] 2025-10-18 08:27:43,904 | INFO     | zombie collector waiting for pid 1072455
[2025-10-18 10:28:15] 2025-10-18 08:27:43,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 10:28:15] 2025-10-18 08:27:43,905 | INFO     | collected zombie processes
[2025-10-18 10:28:15] 2025-10-18 08:27:43,905 | INFO     | will attempt to kill all subprocesses of pid=1072455
[2025-10-18 10:28:15] 2025-10-18 08:27:43,977 | INFO     | process IDs to be killed: [1072455] (in reverse order)
[2025-10-18 10:28:15] 2025-10-18 08:27:44,022 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 10:28:15] 2025-10-18 08:27:44,023 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 10:28:15] 2025-10-18 08:27:44,026 | INFO     | did not find any defunct processes belonging to 1072455
[2025-10-18 10:28:15] 2025-10-18 08:27:44,029 | INFO     | did not find any defunct processes belonging to 1072455
[2025-10-18 10:28:15] 2025-10-18 08:27:44,029 | INFO     | ready for new job
[2025-10-18 10:28:15] 2025-10-18 08:27:44,030 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 10:28:15] 2025-10-18 08:27:44,031 | INFO     | ***************************************
[2025-10-18 10:28:15] 2025-10-18 08:27:44,031 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 10:28:15] 2025-10-18 08:27:44,032 | INFO     | ***************************************
[2025-10-18 10:28:15] 2025-10-18 08:27:44,032 | INFO     | 
[2025-10-18 10:28:15] 2025-10-18 08:27:44,045 | INFO     | architecture information:
[2025-10-18 10:28:15] 2025-10-18 08:27:44,045 | INFO     | executing command: cat /etc/os-release
[2025-10-18 10:28:15] 2025-10-18 08:27:44,064 | INFO     | cat /etc/os-release:
[2025-10-18 10:28:15] NAME="CentOS Linux"
[2025-10-18 10:28:15] VERSION="7 (Core)"
[2025-10-18 10:28:15] ID="centos"
[2025-10-18 10:28:15] ID_LIKE="rhel fedora"
[2025-10-18 10:28:15] VERSION_ID="7"
[2025-10-18 10:28:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 10:28:15] ANSI_COLOR="0;31"
[2025-10-18 10:28:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 10:28:15] HOME_URL="https://www.centos.org/"
[2025-10-18 10:28:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 10:28:15] 
[2025-10-18 10:28:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 10:28:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 10:28:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 10:28:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 10:28:15] 
[2025-10-18 10:28:15] 2025-10-18 08:27:44,064 | INFO     | ***************************************
[2025-10-18 10:28:15] 2025-10-18 08:27:44,567 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-18 10:28:15] 2025-10-18 08:27:44,588 | INFO     | sufficient remaining disk space (213816180736 B)
[2025-10-18 10:28:15] 2025-10-18 08:27:44,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 10:28:15] 2025-10-18 08:27:44,589 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 10:28:15] 2025-10-18 08:27:44,589 | INFO     | update_server=False
[2025-10-18 10:28:15] 2025-10-18 08:27:44,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 10:28:15] 2025-10-18 08:27:44,589 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 10:28:15] 2025-10-18 08:27:44,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 10:28:15] 2025-10-18 08:27:44,758 | INFO     | all data control threads have been joined
[2025-10-18 10:28:15] 2025-10-18 08:27:44,909 | INFO     | all payload control threads have been joined
[2025-10-18 10:28:15] 2025-10-18 08:27:44,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 10:28:15] 2025-10-18 08:27:44,994 | INFO     | aborting loop
[2025-10-18 10:28:15] 2025-10-18 08:27:45,592 | INFO     | [job] retrieve thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:45,595 | INFO     | [job] queue monitor thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:45,763 | INFO     | [data] control thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:45,866 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:45,899 | INFO     | all job control threads have been joined
[2025-10-18 10:28:15] 2025-10-18 08:27:45,914 | INFO     | [payload] control thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:45,999 | INFO     | [job] job monitor thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:46,066 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:46,180 | INFO     | [data] copytool_in thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:46,616 | INFO     | [data] copytool_out thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:46,691 | INFO     | [job] validate thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:46,905 | INFO     | [job] control thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:46,918 | INFO     | [payload] failed_post thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:46,989 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 10:28:15] 2025-10-18 08:27:47,083 | INFO     | [payload] validate_post thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:47,086 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:47,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:50,996 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 10:28:15] 2025-10-18 08:27:52,078 | INFO     | [monitor] cgroup control has ended
[2025-10-18 10:28:15] 2025-10-18 08:27:53,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642744706880)>', '<ExcThread(monitor, started 140642294413056)>']
[2025-10-18 10:28:15] 2025-10-18 08:27:58,802 | INFO     | all workflow threads have been joined
[2025-10-18 10:28:15] 2025-10-18 08:27:58,803 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 10:28:15] 2025-10-18 08:27:58,803 | INFO     | traces error code: 0
[2025-10-18 10:28:15] 2025-10-18 08:27:58,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 10:28:15] 2025-10-18 08:28:14,929 | INFO     | PID=1065952 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 10:28:15] 2025-10-18 08:28:14,931 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 10:28:15] 2025-10-18 08:28:14,931 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 10:28:15] 2025-10-18 08:28:14,931 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 10:28:15] 2025-10-18 08:28:14,931 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 10:28:15] 2025-10-18 08:28:14,931 | INFO     | [monitor] control thread has ended
[2025-10-18 10:28:15] 2025-10-18 08:28:15,083 [wrapper] ==== pilot stdout END ====
[2025-10-18 10:28:15] 2025-10-18 08:28:15,087 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 10:28:15] 2025-10-18 08:28:15,091 [wrapper] pilotpid: 1065952
[2025-10-18 10:28:15] 2025-10-18 08:28:15,094 [wrapper] Pilot exit status: 0
[2025-10-18 10:28:15] 2025-10-18 08:28:15,112 [wrapper] pandaids: 6849608851
[2025-10-18 10:28:15] 2025-10-18 08:28:15,138 [wrapper] cleanup supervisor_pilot 1065958 1065953
[2025-10-18 10:28:15] 2025-10-18 08:28:15,142 [wrapper] Test setup, not cleaning
[2025-10-18 10:28:15] 2025-10-18 08:28:15,145 [wrapper] apfmon messages muted
[2025-10-18 10:28:15] 2025-10-18 08:28:15,149 [wrapper] ==== wrapper stdout END ====
[2025-10-18 10:28:15] 2025-10-18 08:28:15,153 [wrapper] ==== wrapper stderr END ====
[2025-10-18 10:28:15]  *** Error codes and diagnostics ***
[2025-10-18 10:28:15]     "exeErrorCode": 65,
[2025-10-18 10:28:15]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-18 10:28:15]     "pilotErrorCode": 1305,
[2025-10-18 10:28:15]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-18 10:28:15]  *** Listing of results directory ***
[2025-10-18 10:28:15] total 189864
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc    557409 Oct 18 04:51 pilot3.tar.gz
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc      5112 Oct 18 05:19 queuedata.json
[2025-10-18 10:28:15] -rwx------ 1 boinc boinc     36292 Oct 18 05:20 runpilot2-wrapper.sh
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc       100 Oct 18 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 10:28:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 10:21 run_atlas
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc       105 Oct 18 10:21 job.xml
[2025-10-18 10:28:15] -rw-r--r-- 2 boinc boinc 190186005 Oct 18 10:21 EVNT.46808900._000054.pool.root.1
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc      5983 Oct 18 10:21 init_data.xml
[2025-10-18 10:28:15] drwxrwx--x 2 boinc boinc        68 Oct 18 10:21 shared
[2025-10-18 10:28:15] -rw-r--r-- 2 boinc boinc    569670 Oct 18 10:21 input.tar.gz
[2025-10-18 10:28:15] -rw-r--r-- 2 boinc boinc     15120 Oct 18 10:21 start_atlas.sh
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc         0 Oct 18 10:21 boinc_lockfile
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc      2500 Oct 18 10:21 pandaJob.out
[2025-10-18 10:28:15] -rw------- 1 boinc boinc    976749 Oct 18 10:21 agis_schedconf.cvmfs.json
[2025-10-18 10:28:15] -rw------- 1 boinc boinc   1560740 Oct 18 10:21 agis_ddmendpoints.agis.ALL.json
[2025-10-18 10:28:15] drwx------ 5 boinc boinc      4096 Oct 18 10:21 pilot3
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc       524 Oct 18 10:24 boinc_task_state.xml
[2025-10-18 10:28:15] -rw------- 1 boinc boinc     45893 Oct 18 10:25 log.46808902._001234.job.log.tgz.1
[2025-10-18 10:28:15] -rw------- 1 boinc boinc      8056 Oct 18 10:27 heartbeat.json
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc      8192 Oct 18 10:27 boinc_mmap_file
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc        23 Oct 18 10:27 wrapper_checkpoint.txt
[2025-10-18 10:28:15] -rw------- 1 boinc boinc        95 Oct 18 10:28 pilot_heartbeat.json
[2025-10-18 10:28:15] -rw------- 1 boinc boinc       747 Oct 18 10:28 pilotlog.txt
[2025-10-18 10:28:15] -rw------- 1 boinc boinc    129680 Oct 18 10:28 log.46808902._001234.job.log.1
[2025-10-18 10:28:15] -rw------- 1 boinc boinc       188 Oct 18 10:28 output.list
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc       620 Oct 18 10:28 runtime_log
[2025-10-18 10:28:15] -rw------- 1 boinc boinc    194560 Oct 18 10:28 result.tar.gz
[2025-10-18 10:28:15] -rw------- 1 boinc boinc       636 Oct 18 10:28 weRNDm4fCU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZMbMDmPl1JMm.diag
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc      8505 Oct 18 10:28 runtime_log.err
[2025-10-18 10:28:15] -rw-r--r-- 1 boinc boinc     21898 Oct 18 10:28 stderr.txt
[2025-10-18 10:28:15] No HITS result produced
[2025-10-18 10:28:15]  *** Contents of shared directory: ***
[2025-10-18 10:28:15] total 186500
[2025-10-18 10:28:15] -rw-r--r-- 2 boinc boinc 190186005 Oct 18 10:21 ATLAS.root_0
[2025-10-18 10:28:15] -rw-r--r-- 2 boinc boinc    569670 Oct 18 10:21 input.tar.gz
[2025-10-18 10:28:15] -rw-r--r-- 2 boinc boinc     15120 Oct 18 10:21 start_atlas.sh
[2025-10-18 10:28:15] -rw------- 1 boinc boinc    194560 Oct 18 10:28 result.tar.gz
10:28:16 (1062329): run_atlas exited; CPU time 135.367956
10:28:16 (1062329): called boinc_finish(0)

</stderr_txt>
]]>

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