Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:13:11 (21513): wrapper (7.7.26015): starting
04:13:11 (21513): wrapper: running run_atlas (--nthreads 12)
[2025-10-18 04:13:11] Arguments: --nthreads 12
[2025-10-18 04:13:11] Threads: 12
[2025-10-18 04:13:11] Checking for CVMFS
[2025-10-18 04:13:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 04:13:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 04:13:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 04:13:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 04:13:11] 2.11.2.0 2998 231220 101208 151843 0 57 18979651 20275200 1 130560 1 114001260 99.984 13662626 12890 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-18 04:13:11] CVMFS is ok
[2025-10-18 04:13:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 04:13:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 04:13:11] Further information can be found at the LHC@home message board.
[2025-10-18 04:13:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 04:13:11] Checking for apptainer binary...
[2025-10-18 04:13:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 04:13:11] Running /usr/bin/apptainer --version
[2025-10-18 04:13:11] apptainer version 1.3.2-1.el7
[2025-10-18 04:13:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 04:13:13] c-205-25.aglt2.org
[2025-10-18 04:13:13] apptainer works
[2025-10-18 04:13:13] Set ATHENA_PROC_NUMBER=12
[2025-10-18 04:13:13] Set ATHENA_CORE_NUMBER=12
[2025-10-18 04:13:13] Starting ATLAS job with PandaID=6847335140
[2025-10-18 04:13:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 05:33:42]  *** The last 200 lines of the pilot log: ***
[2025-10-18 05:33:42]  storage_token=
[2025-10-18 05:33:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6847335140/log.46771637._018531.job.log.tgz.1
[2025-10-18 05:33:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/a0/log.46771637._018531.job.log.tgz.1
[2025-10-18 05:33:42]  workdir=None
[2025-10-18 05:33:42] ]
[2025-10-18 05:33:42] 2025-10-18 09:32:45,104 | INFO     | transferring file log.46771637._018531.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6847335140/log.46771637._018531.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-18 05:33:42] 2025-10-18 09:32:45,104 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6847335140/log.46771637._018531.job.log.tgz.1 /tmp/boinchome/slots/0/log.46771637._018531.job
[2025-10-18 05:33:42] 2025-10-18 09:32:45,125 | INFO     | adding to output.list: log.46771637._018531.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/a0/log.46771637._018531.job.log.tg
[2025-10-18 05:33:42] 2025-10-18 09:32:45,126 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-18 05:33:42] 2025-10-18 09:32:45,126 | INFO     | summary of transferred files:
[2025-10-18 05:33:42] 2025-10-18 09:32:45,126 | INFO     |  -- lfn=log.46771637._018531.job.log.tgz.1, status_code=0, status=transferred
[2025-10-18 05:33:42] 2025-10-18 09:32:45,127 | INFO     | stage-out finished correctly
[2025-10-18 05:33:42] 2025-10-18 09:32:46,160 | INFO     | monitor loop #355: job 0:6847335140 is in state 'finished'
[2025-10-18 05:33:42] 2025-10-18 09:32:46,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 05:33:42] 2025-10-18 09:32:46,580 | INFO     | time since job start (4758s) is within the limit (172800.0s)
[2025-10-18 05:33:42] 2025-10-18 09:32:46,581 | INFO     | 4761s have passed since pilot start - server update state is 'RUNNING'
[2025-10-18 05:33:42] 2025-10-18 09:32:48,117 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-18 05:33:42] 2025-10-18 09:32:48,196 | INFO     | job 6847335140 has state=finished
[2025-10-18 05:33:42] 2025-10-18 09:32:48,196 | INFO     | preparing for final server update for job 6847335140 in state='finished'
[2025-10-18 05:33:42] 2025-10-18 09:32:48,197 | INFO     | this job has now completed (state=finished)
[2025-10-18 05:33:42] 2025-10-18 09:32:48,197 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-18 05:33:42] 2025-10-18 09:32:48,197 | INFO     | log transfer has been attempted: DONE
[2025-10-18 05:33:42] 2025-10-18 09:32:48,197 | INFO     | job 6847335140 has finished - writing final server update
[2025-10-18 05:33:42] 2025-10-18 09:32:48,197 | INFO     | total number of processed events: 400 (read)
[2025-10-18 05:33:42] 2025-10-18 09:32:48,198 | INFO     | executing command: lscpu
[2025-10-18 05:33:42] 2025-10-18 09:32:48,222 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-18 05:33:42] 2025-10-18 09:32:48,586 | INFO     | time since job start (4760s) is within the limit (172800.0s)
[2025-10-18 05:33:42] 2025-10-18 09:32:48,679 | INFO     | monitor loop #356: job 0:6847335140 is in state 'finished'
[2025-10-18 05:33:42] 2025-10-18 09:32:48,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 05:33:42] 2025-10-18 09:32:50,592 | INFO     | time since job start (4762s) is within the limit (172800.0s)
[2025-10-18 05:33:42] 2025-10-18 09:32:51,182 | INFO     | monitor loop #357: job 0:6847335140 is in state 'finished'
[2025-10-18 05:33:42] 2025-10-18 09:32:51,182 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 05:33:42] 2025-10-18 09:32:52,597 | INFO     | time since job start (4764s) is within the limit (172800.0s)
[2025-10-18 05:33:42] 2025-10-18 09:32:53,685 | INFO     | monitor loop #358: job 0:6847335140 is in state 'finished'
[2025-10-18 05:33:42] 2025-10-18 09:32:53,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 05:33:42] 2025-10-18 09:32:53,892 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-18 05:33:42] 2025-10-18 09:32:53,896 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-18 05:33:42] 2025-10-18 09:32:53,897 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6847335140/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 05:33:42] 2025-10-18 09:32:53,898 | INFO     | extracted standard info from prmon json
[2025-10-18 05:33:42] 2025-10-18 09:32:53,898 | INFO     | extracted standard memory fields from prmon json
[2025-10-18 05:33:42] 2025-10-18 09:32:53,898 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 05:33:42] 2025-10-18 09:32:53,898 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 05:33:42] 2025-10-18 09:32:53,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 05:33:42] 2025-10-18 09:32:53,900 | INFO     | fitting pss+swap vs Time
[2025-10-18 05:33:42] 2025-10-18 09:32:53,900 | INFO     | sum of square deviations: 110960220.0
[2025-10-18 05:33:42] 2025-10-18 09:32:53,901 | INFO     | sum of deviations: -6594427447.999999
[2025-10-18 05:33:42] 2025-10-18 09:32:53,901 | INFO     | mean x: 1760777677.0
[2025-10-18 05:33:42] 2025-10-18 09:32:53,901 | INFO     | mean y: 2895039.591549296
[2025-10-18 05:33:42] 2025-10-18 09:32:53,901 | INFO     | -- intersect: 104646889464.21037
[2025-10-18 05:33:42] 2025-10-18 09:32:53,901 | INFO     | intersect: 104646889464.21037
[2025-10-18 05:33:42] 2025-10-18 09:32:53,901 | INFO     | chi2: 0.07572319326303945
[2025-10-18 05:33:42] 2025-10-18 09:32:53,901 | INFO     | -- intersect: 104646889464.21037
[2025-10-18 05:33:42] 2025-10-18 09:32:53,901 | INFO     | current memory leak: -59.43 B/s (using 71 data points, chi2=0.08)
[2025-10-18 05:33:42] 2025-10-18 09:32:53,902 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-10-18 05:33:42] 2025-10-18 09:32:53,902 | INFO     | ..............................
[2025-10-18 05:33:42] 2025-10-18 09:32:53,902 | INFO     | . Timing measurements:
[2025-10-18 05:33:42] 2025-10-18 09:32:53,902 | INFO     | . get job = 0 s
[2025-10-18 05:33:42] 2025-10-18 09:32:53,902 | INFO     | . initial setup = 2 s
[2025-10-18 05:33:42] 2025-10-18 09:32:53,902 | INFO     | . payload setup = 7 s
[2025-10-18 05:33:42] 2025-10-18 09:32:53,902 | INFO     | . stage-in = 0 s
[2025-10-18 05:33:42] 2025-10-18 09:32:53,903 | INFO     | . payload execution = 4728 s
[2025-10-18 05:33:42] 2025-10-18 09:32:53,903 | INFO     | . stage-out = 0 s
[2025-10-18 05:33:42] 2025-10-18 09:32:53,903 | INFO     | . log creation = 0 s
[2025-10-18 05:33:42] 2025-10-18 09:32:53,903 | INFO     | ..............................
[2025-10-18 05:33:42] 2025-10-18 09:32:53,984 | INFO     | 
[2025-10-18 05:33:42] 2025-10-18 09:32:53,985 | INFO     | job summary report
[2025-10-18 05:33:42] 2025-10-18 09:32:53,985 | INFO     | --------------------------------------------------
[2025-10-18 05:33:42] 2025-10-18 09:32:53,985 | INFO     | PanDA job id: 6847335140
[2025-10-18 05:33:42] 2025-10-18 09:32:53,985 | INFO     | task id: 46771637
[2025-10-18 05:33:42] 2025-10-18 09:32:53,985 | INFO     | errors: (none)
[2025-10-18 05:33:42] 2025-10-18 09:32:53,985 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 05:33:42] 2025-10-18 09:32:53,986 | INFO     | pilot state: finished 
[2025-10-18 05:33:42] 2025-10-18 09:32:53,986 | INFO     | transexitcode: 0
[2025-10-18 05:33:42] 2025-10-18 09:32:53,986 | INFO     | exeerrorcode: 0
[2025-10-18 05:33:42] 2025-10-18 09:32:53,986 | INFO     | exeerrordiag: 
[2025-10-18 05:33:42] 2025-10-18 09:32:53,986 | INFO     | exitcode: 0
[2025-10-18 05:33:42] 2025-10-18 09:32:53,986 | INFO     | exitmsg: OK
[2025-10-18 05:33:42] 2025-10-18 09:32:53,987 | INFO     | cpuconsumptiontime: 51304 s
[2025-10-18 05:33:42] 2025-10-18 09:32:53,987 | INFO     | nevents: 400
[2025-10-18 05:33:42] 2025-10-18 09:32:53,987 | INFO     | neventsw: 0
[2025-10-18 05:33:42] 2025-10-18 09:32:53,987 | INFO     | pid: 31559
[2025-10-18 05:33:42] 2025-10-18 09:32:53,987 | INFO     | pgrp: 31559
[2025-10-18 05:33:42] 2025-10-18 09:32:53,987 | INFO     | corecount: 12
[2025-10-18 05:33:42] 2025-10-18 09:32:53,988 | INFO     | event service: False
[2025-10-18 05:33:42] 2025-10-18 09:32:53,988 | INFO     | sizes: {0: 2348099, 1: 2348955, 6: 2349217, 12: 2349245, 4740: 2375409, 4741: 2384407, 4744: 2384591, 4750: 2384785}
[2025-10-18 05:33:42] 2025-10-18 09:32:53,988 | INFO     | --------------------------------------------------
[2025-10-18 05:33:42] 2025-10-18 09:32:53,988 | INFO     | 
[2025-10-18 05:33:42] 2025-10-18 09:32:53,988 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-18 05:33:42] 2025-10-18 09:32:54,011 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,013 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,013 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,013 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,014 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,014 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,014 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,014 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,014 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,014 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 05:33:42] 2025-10-18 09:32:54,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 05:33:42] 2025-10-18 09:32:54,015 | INFO     | job 6847335140 has completed (purged errors)
[2025-10-18 05:33:42] 2025-10-18 09:32:54,015 | INFO     | overall cleanup function is called
[2025-10-18 05:33:42] 2025-10-18 09:32:55,022 | INFO     | --- collectZombieJob: --- 10, [31559]
[2025-10-18 05:33:42] 2025-10-18 09:32:55,022 | INFO     | zombie collector waiting for pid 31559
[2025-10-18 05:33:42] 2025-10-18 09:32:55,032 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 05:33:42] 2025-10-18 09:32:55,032 | INFO     | collected zombie processes
[2025-10-18 05:33:42] 2025-10-18 09:32:55,032 | INFO     | will attempt to kill all subprocesses of pid=31559
[2025-10-18 05:33:42] 2025-10-18 09:32:55,123 | INFO     | process IDs to be killed: [31559] (in reverse order)
[2025-10-18 05:33:42] 2025-10-18 09:32:55,177 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 05:33:42] 2025-10-18 09:32:55,177 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 05:33:42] 2025-10-18 09:32:55,181 | INFO     | did not find any defunct processes belonging to 31559
[2025-10-18 05:33:42] 2025-10-18 09:32:55,184 | INFO     | did not find any defunct processes belonging to 31559
[2025-10-18 05:33:42] 2025-10-18 09:32:55,185 | INFO     | ready for new job
[2025-10-18 05:33:42] 2025-10-18 09:32:55,185 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 05:33:42] 2025-10-18 09:32:55,186 | INFO     | ***************************************
[2025-10-18 05:33:42] 2025-10-18 09:32:55,186 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 05:33:42] 2025-10-18 09:32:55,186 | INFO     | ***************************************
[2025-10-18 05:33:42] 2025-10-18 09:32:55,186 | INFO     | 
[2025-10-18 05:33:42] 2025-10-18 09:32:55,187 | INFO     | architecture information:
[2025-10-18 05:33:42] 2025-10-18 09:32:55,187 | INFO     | executing command: cat /etc/os-release
[2025-10-18 05:33:42] 2025-10-18 09:32:55,202 | INFO     | cat /etc/os-release:
[2025-10-18 05:33:42] NAME="CentOS Linux"
[2025-10-18 05:33:42] VERSION="7 (Core)"
[2025-10-18 05:33:42] ID="centos"
[2025-10-18 05:33:42] ID_LIKE="rhel fedora"
[2025-10-18 05:33:42] VERSION_ID="7"
[2025-10-18 05:33:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 05:33:42] ANSI_COLOR="0;31"
[2025-10-18 05:33:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 05:33:42] HOME_URL="https://www.centos.org/"
[2025-10-18 05:33:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 05:33:42] 
[2025-10-18 05:33:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 05:33:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 05:33:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 05:33:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 05:33:42] 
[2025-10-18 05:33:42] 2025-10-18 09:32:55,202 | INFO     | ***************************************
[2025-10-18 05:33:42] 2025-10-18 09:32:55,705 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-18 05:33:42] 2025-10-18 09:32:55,721 | INFO     | sufficient remaining disk space (29333913600 B)
[2025-10-18 05:33:42] 2025-10-18 09:32:55,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 05:33:42] 2025-10-18 09:32:55,722 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 05:33:42] 2025-10-18 09:32:55,722 | INFO     | update_server=False
[2025-10-18 05:33:42] 2025-10-18 09:32:55,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 05:33:42] 2025-10-18 09:32:55,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 05:33:42] 2025-10-18 09:32:55,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 05:33:42] 2025-10-18 09:32:55,868 | INFO     | all payload control threads have been joined
[2025-10-18 05:33:42] 2025-10-18 09:32:56,188 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-18 05:33:42] 2025-10-18 09:32:56,188 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-18 05:33:42] 2025-10-18 09:32:56,188 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 05:33:42] 2025-10-18 09:32:56,189 | INFO     | will abort loop
[2025-10-18 05:33:42] 2025-10-18 09:32:56,696 | INFO     | all data control threads have been joined
[2025-10-18 05:33:42] 2025-10-18 09:32:56,728 | INFO     | [job] retrieve thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:56,728 | INFO     | [job] queue monitor thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:56,808 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:56,873 | INFO     | [payload] control thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:56,913 | INFO     | [data] copytool_in thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:57,194 | INFO     | [job] job monitor thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:57,197 | INFO     | [payload] failed_post thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:57,208 | INFO     | all job control threads have been joined
[2025-10-18 05:33:42] 2025-10-18 09:32:57,387 | INFO     | [job] validate thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:57,702 | INFO     | [data] control thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:57,728 | INFO     | [data] copytool_out thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:57,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:57,753 | INFO     | [payload] validate_post thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:57,762 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:57,835 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:58,212 | INFO     | [job] control thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:32:58,705 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 05:33:42] 2025-10-18 09:33:02,711 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 05:33:42] 2025-10-18 09:33:25,793 | INFO     | PID=25188 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-18 05:33:42] 2025-10-18 09:33:25,793 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 05:33:42] 2025-10-18 09:33:25,793 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 05:33:42] 2025-10-18 09:33:25,793 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 05:33:42] 2025-10-18 09:33:35,318 | INFO     | [monitor] cgroup control has ended
[2025-10-18 05:33:42] 2025-10-18 09:33:36,947 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140051541559104)>', '<ExcThread(monitor, started 140050352301824)>']
[2025-10-18 05:33:42] 2025-10-18 09:33:37,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 05:33:42] 2025-10-18 09:33:37,855 | INFO     | [monitor] control thread has ended
[2025-10-18 05:33:42] 2025-10-18 09:33:41,954 | INFO     | all workflow threads have been joined
[2025-10-18 05:33:42] 2025-10-18 09:33:41,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 05:33:42] 2025-10-18 09:33:41,954 | INFO     | traces error code: 0
[2025-10-18 05:33:42] 2025-10-18 09:33:41,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 05:33:42] 2025-10-18 09:33:42,048 [wrapper] ==== pilot stdout END ====
[2025-10-18 05:33:42] 2025-10-18 09:33:42,052 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 05:33:42] 2025-10-18 09:33:42,056 [wrapper] pilotpid: 25188
[2025-10-18 05:33:42] 2025-10-18 09:33:42,060 [wrapper] Pilot exit status: 0
[2025-10-18 05:33:42] 2025-10-18 09:33:42,076 [wrapper] pandaids: 6847335140
[2025-10-18 05:33:42] 2025-10-18 09:33:42,119 [wrapper] cleanup supervisor_pilot 20814 25189
[2025-10-18 05:33:42] 2025-10-18 09:33:42,123 [wrapper] Test setup, not cleaning
[2025-10-18 05:33:42] 2025-10-18 09:33:42,127 [wrapper] apfmon messages muted
[2025-10-18 05:33:42] 2025-10-18 09:33:42,131 [wrapper] ==== wrapper stdout END ====
[2025-10-18 05:33:42] 2025-10-18 09:33:42,135 [wrapper] ==== wrapper stderr END ====
[2025-10-18 05:33:42]  *** Error codes and diagnostics ***
[2025-10-18 05:33:42]     "exeErrorCode": 0,
[2025-10-18 05:33:42]     "exeErrorDiag": "",
[2025-10-18 05:33:42]     "pilotErrorCode": 0,
[2025-10-18 05:33:42]     "pilotErrorDiag": "",
[2025-10-18 05:33:42]  *** Listing of results directory ***
[2025-10-18 05:33:42] total 433044
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas    557409 Oct 16 17:35 pilot3.tar.gz
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas      5112 Oct 16 17:47 queuedata.json
[2025-10-18 05:33:42] -rwx------ 1 boincer umatlas     36292 Oct 16 17:47 runpilot2-wrapper.sh
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas       100 Oct 18 04:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 05:33:42] -rwxr-xr-x 1 boincer umatlas      7986 Oct 18 04:13 run_atlas
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas       105 Oct 18 04:13 job.xml
[2025-10-18 05:33:42] -rw-r--r-- 2 boincer umatlas 227558852 Oct 18 04:13 EVNT.46771634._000930.pool.root.1
[2025-10-18 05:33:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 18 04:13 start_atlas.sh
[2025-10-18 05:33:42] drwxrwx--x 2 boincer umatlas      4096 Oct 18 04:13 shared
[2025-10-18 05:33:42] -rw-r--r-- 2 boincer umatlas    569679 Oct 18 04:13 input.tar.gz
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas         0 Oct 18 04:13 boinc_lockfile
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas      2557 Oct 18 04:13 pandaJob.out
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas    976741 Oct 18 04:13 agis_schedconf.cvmfs.json
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas   1560740 Oct 18 04:13 agis_ddmendpoints.agis.ALL.json
[2025-10-18 05:33:42] drwx------ 5 boincer umatlas      4096 Oct 18 04:13 pilot3
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas      5952 Oct 18 05:28 init_data.xml
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas 209808670 Oct 18 05:32 HITS.46771637._018531.pool.root.1
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas        95 Oct 18 05:32 pilot_heartbeat.json
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas       529 Oct 18 05:32 boinc_task_state.xml
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas      1052 Oct 18 05:32 memory_monitor_summary.json
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas    395884 Oct 18 05:32 log.46771637._018531.job.log.tgz.1
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas      7859 Oct 18 05:32 heartbeat.json
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas      8192 Oct 18 05:33 boinc_mmap_file
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas        27 Oct 18 05:33 wrapper_checkpoint.txt
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas      4932 Oct 18 05:33 pilotlog.txt
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas    687354 Oct 18 05:33 log.46771637._018531.job.log.1
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas       357 Oct 18 05:33 output.list
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas       620 Oct 18 05:33 runtime_log
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas   1105920 Oct 18 05:33 result.tar.gz
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas      8705 Oct 18 05:33 runtime_log.err
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas       659 Oct 18 05:33 5xPMDmB0kT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmh6YMDmn9Jwrn.diag
[2025-10-18 05:33:42] -rw-r--r-- 1 boincer umatlas     22207 Oct 18 05:33 stderr.txt
[2025-10-18 05:33:42] HITS file was successfully produced:
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas 209808670 Oct 18 05:32 shared/HITS.pool.root.1
[2025-10-18 05:33:42]  *** Contents of shared directory: ***
[2025-10-18 05:33:42] total 428780
[2025-10-18 05:33:42] -rw-r--r-- 2 boincer umatlas 227558852 Oct 18 04:13 ATLAS.root_0
[2025-10-18 05:33:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 18 04:13 start_atlas.sh
[2025-10-18 05:33:42] -rw-r--r-- 2 boincer umatlas    569679 Oct 18 04:13 input.tar.gz
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas 209808670 Oct 18 05:32 HITS.pool.root.1
[2025-10-18 05:33:42] -rw------- 1 boincer umatlas   1105920 Oct 18 05:33 result.tar.gz
05:33:44 (21513): run_atlas exited; CPU time 51272.607944
05:33:44 (21513): called boinc_finish(0)

</stderr_txt>
]]>

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