Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:22:11 (1642329): wrapper (7.7.26015): starting
20:22:11 (1642329): wrapper: running run_atlas (--nthreads 4)
[2025-10-18 20:22:11] Arguments: --nthreads 4
[2025-10-18 20:22:11] Threads: 4
[2025-10-18 20:22:11] Checking for CVMFS
[2025-10-18 20:22:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 20:22:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 20:22:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 20:22:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 20:22:12] 2.9.2.0 85452 3846 99808 151861 3 56 23341274 36864000 0 130560 0 4098249 99.993 141267 2710 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 20:22:12] CVMFS is ok
[2025-10-18 20:22:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 20:22:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 20:22:12] Further information can be found at the LHC@home message board.
[2025-10-18 20:22:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 20:22:12] Checking for apptainer binary...
[2025-10-18 20:22:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 20:22:12] Running /usr/bin/apptainer --version
[2025-10-18 20:22:12] apptainer version 1.4.1-1.1
[2025-10-18 20:22:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 20:22:12] thA373a
[2025-10-18 20:22:12] apptainer works
[2025-10-18 20:22:12] Set ATHENA_PROC_NUMBER=4
[2025-10-18 20:22:12] Set ATHENA_CORE_NUMBER=4
[2025-10-18 20:22:12] Starting ATLAS job with PandaID=6849608632
[2025-10-18 20:22:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 21:19:36]  *** The last 200 lines of the pilot log: ***
[2025-10-18 21:19:36] 2025-10-18 19:19:03,567 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 21:19:36] 2025-10-18 19:19:03,567 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 21:19:36] 2025-10-18 19:19:03,567 | INFO     | job 6849608632 has completed (purged errors)
[2025-10-18 21:19:36] 2025-10-18 19:19:03,568 | INFO     | overall cleanup function is called
[2025-10-18 21:19:36] 2025-10-18 19:19:04,574 | INFO     | --- collectZombieJob: --- 10, [1652706]
[2025-10-18 21:19:36] 2025-10-18 19:19:04,575 | INFO     | zombie collector waiting for pid 1652706
[2025-10-18 21:19:36] 2025-10-18 19:19:04,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 21:19:36] 2025-10-18 19:19:04,575 | INFO     | collected zombie processes
[2025-10-18 21:19:36] 2025-10-18 19:19:04,575 | INFO     | will attempt to kill all subprocesses of pid=1652706
[2025-10-18 21:19:36] 2025-10-18 19:19:04,627 | INFO     | process IDs to be killed: [1652706] (in reverse order)
[2025-10-18 21:19:36] 2025-10-18 19:19:04,660 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 21:19:36] 2025-10-18 19:19:04,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 21:19:36] 2025-10-18 19:19:04,663 | INFO     | did not find any defunct processes belonging to 1652706
[2025-10-18 21:19:36] 2025-10-18 19:19:04,664 | INFO     | did not find any defunct processes belonging to 1652706
[2025-10-18 21:19:36] 2025-10-18 19:19:04,664 | INFO     | ready for new job
[2025-10-18 21:19:36] 2025-10-18 19:19:04,664 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 21:19:36] 2025-10-18 19:19:04,665 | INFO     | ***************************************
[2025-10-18 21:19:36] 2025-10-18 19:19:04,665 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 21:19:36] 2025-10-18 19:19:04,665 | INFO     | ***************************************
[2025-10-18 21:19:36] 2025-10-18 19:19:04,665 | INFO     | 
[2025-10-18 21:19:36] 2025-10-18 19:19:04,666 | INFO     | architecture information:
[2025-10-18 21:19:36] 2025-10-18 19:19:04,666 | INFO     | executing command: cat /etc/os-release
[2025-10-18 21:19:36] 2025-10-18 19:19:04,679 | INFO     | cat /etc/os-release:
[2025-10-18 21:19:36] NAME="CentOS Linux"
[2025-10-18 21:19:36] VERSION="7 (Core)"
[2025-10-18 21:19:36] ID="centos"
[2025-10-18 21:19:36] ID_LIKE="rhel fedora"
[2025-10-18 21:19:36] VERSION_ID="7"
[2025-10-18 21:19:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 21:19:36] ANSI_COLOR="0;31"
[2025-10-18 21:19:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 21:19:36] HOME_URL="https://www.centos.org/"
[2025-10-18 21:19:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 21:19:36] 
[2025-10-18 21:19:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 21:19:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 21:19:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 21:19:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 21:19:36] 
[2025-10-18 21:19:36] 2025-10-18 19:19:04,679 | INFO     | ***************************************
[2025-10-18 21:19:36] 2025-10-18 19:19:05,182 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 21:19:36] 2025-10-18 19:19:05,200 | INFO     | sufficient remaining disk space (336521592832 B)
[2025-10-18 21:19:36] 2025-10-18 19:19:05,200 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 21:19:36] 2025-10-18 19:19:05,200 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 21:19:36] 2025-10-18 19:19:05,200 | INFO     | update_server=False
[2025-10-18 21:19:36] 2025-10-18 19:19:05,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 21:19:36] 2025-10-18 19:19:05,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 21:19:36] 2025-10-18 19:19:05,550 | INFO     | all data control threads have been joined
[2025-10-18 21:19:36] 2025-10-18 19:19:05,592 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 21:19:36] 2025-10-18 19:19:05,592 | INFO     | aborting loop
[2025-10-18 21:19:36] 2025-10-18 19:19:05,608 | INFO     | all payload control threads have been joined
[2025-10-18 21:19:36] 2025-10-18 19:19:06,202 | INFO     | [job] queue monitor thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:06,202 | INFO     | [job] retrieve thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:06,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 21:19:36] 2025-10-18 19:19:06,556 | INFO     | [data] control thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:06,598 | INFO     | [job] job monitor thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:06,613 | INFO     | [payload] control thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:06,673 | INFO     | all job control threads have been joined
[2025-10-18 21:19:36] 2025-10-18 19:19:06,895 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:06,959 | INFO     | [payload] failed_post thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:07,317 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:07,318 | INFO     | [job] validate thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:07,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 21:19:36] 2025-10-18 19:19:07,504 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:07,615 | INFO     | [data] copytool_in thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:07,636 | INFO     | [payload] validate_post thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:07,679 | INFO     | [job] control thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:08,305 | INFO     | [data] copytool_out thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:11,500 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:15,652 | INFO     | job.realtimelogging is not enabled
[2025-10-18 21:19:36] 2025-10-18 19:19:16,658 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 21:19:36] 2025-10-18 19:19:22,951 | INFO     | [monitor] cgroup control has ended
[2025-10-18 21:19:36] 2025-10-18 19:19:24,977 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139940307248960)>', '<ExcThread(monitor, started 139939807217408)>']
[2025-10-18 21:19:36] 2025-10-18 19:19:29,984 | INFO     | all workflow threads have been joined
[2025-10-18 21:19:36] 2025-10-18 19:19:29,984 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 21:19:36] 2025-10-18 19:19:29,985 | INFO     | traces error code: 0
[2025-10-18 21:19:36] 2025-10-18 19:19:29,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 21:19:36] 2025-10-18 19:19:36,223 | INFO     | PID=1646142 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 21:19:36] 2025-10-18 19:19:36,223 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 21:19:36] 2025-10-18 19:19:36,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 21:19:36] 2025-10-18 19:19:36,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 21:19:36] 2025-10-18 19:19:36,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 21:19:36] 2025-10-18 19:19:36,223 | INFO     | [monitor] control thread has ended
[2025-10-18 21:19:36] 2025-10-18 19:19:36,298 [wrapper] ==== pilot stdout END ====
[2025-10-18 21:19:36] 2025-10-18 19:19:36,302 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 21:19:36] 2025-10-18 19:19:36,306 [wrapper] pilotpid: 1646142
[2025-10-18 21:19:36] 2025-10-18 19:19:36,309 [wrapper] Pilot exit status: 0
[2025-10-18 21:19:36] 2025-10-18 19:19:36,320 [wrapper] pandaids: 6849608632
[2025-10-18 21:19:36] 2025-10-18 19:19:36,342 [wrapper] cleanup supervisor_pilot 1662375 1646143
[2025-10-18 21:19:36] 2025-10-18 19:19:36,346 [wrapper] Test setup, not cleaning
[2025-10-18 21:19:36] 2025-10-18 19:19:36,350 [wrapper] apfmon messages muted
[2025-10-18 21:19:36] 2025-10-18 19:19:36,354 [wrapper] ==== wrapper stdout END ====
[2025-10-18 21:19:36] 2025-10-18 19:19:36,358 [wrapper] ==== wrapper stderr END ====
[2025-10-18 21:19:36]  *** Error codes and diagnostics ***
[2025-10-18 21:19:36]     "exeErrorCode": 0,
[2025-10-18 21:19:36]     "exeErrorDiag": "",
[2025-10-18 21:19:36]     "pilotErrorCode": 0,
[2025-10-18 21:19:36]     "pilotErrorDiag": "",
[2025-10-18 21:19:36]  *** Listing of results directory ***
[2025-10-18 21:19:36] total 335656
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc    557409 Oct 18 04:18 pilot3.tar.gz
[2025-10-18 21:19:36] -rwx------ 1 boinc boinc     36292 Oct 18 04:46 runpilot2-wrapper.sh
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc      5112 Oct 18 04:46 queuedata.json
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc       100 Oct 18 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 21:19:36] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 20:22 run_atlas
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc       105 Oct 18 20:22 job.xml
[2025-10-18 21:19:36] -rw-r--r-- 2 boinc boinc 192630452 Oct 18 20:22 EVNT.46808900._000045.pool.root.1
[2025-10-18 21:19:36] -rw-r--r-- 2 boinc boinc    569663 Oct 18 20:22 input.tar.gz
[2025-10-18 21:19:36] -rw-r--r-- 2 boinc boinc     15120 Oct 18 20:22 start_atlas.sh
[2025-10-18 21:19:36] drwxrwx--x 2 boinc boinc      4096 Oct 18 20:22 shared
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc         0 Oct 18 20:22 boinc_setup_complete
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc      6376 Oct 18 20:22 init_data.xml
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc         0 Oct 18 20:22 boinc_lockfile
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc      2502 Oct 18 20:22 pandaJob.out
[2025-10-18 21:19:36] -rw------- 1 boinc boinc    976750 Oct 18 20:22 agis_schedconf.cvmfs.json
[2025-10-18 21:19:36] -rw------- 1 boinc boinc   1560740 Oct 18 20:22 agis_ddmendpoints.agis.ALL.json
[2025-10-18 21:19:36] drwx------ 5 boinc boinc      4096 Oct 18 20:22 pilot3
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc       529 Oct 18 21:18 boinc_task_state.xml
[2025-10-18 21:19:36] -rw------- 1 boinc boinc        95 Oct 18 21:18 pilot_heartbeat.json
[2025-10-18 21:19:36] -rw------- 1 boinc boinc 145670552 Oct 18 21:18 HITS.46808902._001015.pool.root.1
[2025-10-18 21:19:36] -rw------- 1 boinc boinc      1019 Oct 18 21:18 memory_monitor_summary.json
[2025-10-18 21:19:36] -rw------- 1 boinc boinc    248283 Oct 18 21:18 log.46808902._001015.job.log.tgz.1
[2025-10-18 21:19:36] -rw------- 1 boinc boinc      7757 Oct 18 21:19 heartbeat.json
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc        27 Oct 18 21:19 wrapper_checkpoint.txt
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc      8192 Oct 18 21:19 boinc_mmap_file
[2025-10-18 21:19:36] -rw------- 1 boinc boinc       747 Oct 18 21:19 pilotlog.txt
[2025-10-18 21:19:36] -rw------- 1 boinc boinc    515773 Oct 18 21:19 log.46808902._001015.job.log.1
[2025-10-18 21:19:36] -rw------- 1 boinc boinc       357 Oct 18 21:19 output.list
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc       620 Oct 18 21:19 runtime_log
[2025-10-18 21:19:36] -rw------- 1 boinc boinc    778240 Oct 18 21:19 result.tar.gz
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc      8782 Oct 18 21:19 runtime_log.err
[2025-10-18 21:19:36] -rw------- 1 boinc boinc       658 Oct 18 21:19 Zh6MDmC9BU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZsvNDmzV1O1m.diag
[2025-10-18 21:19:36] -rw-r--r-- 1 boinc boinc     11109 Oct 18 21:19 stderr.txt
[2025-10-18 21:19:36] HITS file was successfully produced:
[2025-10-18 21:19:36] -rw------- 1 boinc boinc 145670552 Oct 18 21:18 shared/HITS.pool.root.1
[2025-10-18 21:19:36]  *** Contents of shared directory: ***
[2025-10-18 21:19:36] total 331720
[2025-10-18 21:19:36] -rw-r--r-- 2 boinc boinc 192630452 Oct 18 20:22 ATLAS.root_0
[2025-10-18 21:19:36] -rw-r--r-- 2 boinc boinc    569663 Oct 18 20:22 input.tar.gz
[2025-10-18 21:19:36] -rw-r--r-- 2 boinc boinc     15120 Oct 18 20:22 start_atlas.sh
[2025-10-18 21:19:36] -rw------- 1 boinc boinc 145670552 Oct 18 21:18 HITS.pool.root.1
[2025-10-18 21:19:36] -rw------- 1 boinc boinc    778240 Oct 18 21:19 result.tar.gz
21:19:38 (1642329): run_atlas exited; CPU time 12645.422908
21:19:38 (1642329): called boinc_finish(0)

</stderr_txt>
]]>

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