Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:47:28 (453624): wrapper (7.7.26015): starting
07:47:28 (453624): wrapper: running run_atlas (--nthreads 2)
[2025-10-18 07:47:28] Arguments: --nthreads 2
[2025-10-18 07:47:28] Threads: 2
[2025-10-18 07:47:28] Checking for CVMFS
[2025-10-18 07:47:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 07:47:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 07:47:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 07:47:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 07:47:30] 2.11.0.0 4067274 147 45436 151840 0 186 2862592 4194305 0 130560 0 1821970 99.999 5380 739 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-18 07:47:30] CVMFS is ok
[2025-10-18 07:47:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 07:47:30] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-18 07:47:30] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-18 07:47:30] Further information can be found at the LHC@home message board.
[2025-10-18 07:47:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 07:47:30] Checking for apptainer binary...
[2025-10-18 07:47:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 07:47:30] Running /usr/bin/apptainer --version
[2025-10-18 07:47:31] apptainer version 1.2.2-1.el8
[2025-10-18 07:47:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 07:47:32] bottom
[2025-10-18 07:47:32] apptainer works
[2025-10-18 07:47:32] Set ATHENA_PROC_NUMBER=2
[2025-10-18 07:47:32] Set ATHENA_CORE_NUMBER=2
[2025-10-18 07:47:32] Starting ATLAS job with PandaID=6848017389
[2025-10-18 07:47:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 07:55:14]  *** The last 200 lines of the pilot log: ***
[2025-10-18 07:55:14] 2025-10-18 05:54:42,476 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1532.137
[2025-10-18 07:55:14] 2025-10-18 05:54:42,477 | WARNING  | file does not exist either: /var/lib/boinc/slots/0/PanDA_Pilot-6848017389/memory_monitor_output.txt
[2025-10-18 07:55:14] 2025-10-18 05:54:42,478 | INFO     | memory summary dictionary not yet available
[2025-10-18 07:55:14] 2025-10-18 05:54:42,478 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 07:55:14] 2025-10-18 05:54:42,478 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | could have reported an average CPU frequency of 1760 MHz (4 samples)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | ..............................
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | . Timing measurements:
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | . get job = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . initial setup = 3 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . payload setup = 10 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . stage-in = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . payload execution = 186 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . stage-out = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . log creation = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | ..............................
[2025-10-18 07:55:14] 2025-10-18 05:54:42,481 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-18 07:55:14] 2025-10-18 05:54:42,481 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/0/PanDA_Pilot-6848017389/pilotlog.txt
[2025-10-18 07:55:14] 2025-10-18 05:54:42,498 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-18 07:55:14] - Log from pilotlog.txt -
[2025-10-18 07:55:14] 2025-10-18 05:54:41,081 | INFO     | time since job start (405s) is within the limit (172800.0s)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,463 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-18 07:55:14] 2025-10-18 05:54:42,476 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1532.137
[2025-10-18 07:55:14] 2025-10-18 05:54:42,477 | WARNING  | file does not exist either: /var/lib/boinc/slots/0/PanDA_Pilot-6848017389/memory_monitor_output.txt
[2025-10-18 07:55:14] 2025-10-18 05:54:42,478 | INFO     | memory summary dictionary not yet available
[2025-10-18 07:55:14] 2025-10-18 05:54:42,478 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 07:55:14] 2025-10-18 05:54:42,478 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | could have reported an average CPU frequency of 1760 MHz (4 samples)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | ..............................
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | . Timing measurements:
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | . get job = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . initial setup = 3 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . payload setup = 10 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . stage-in = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . payload execution = 186 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . stage-out = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . log creation = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | ..............................
[2025-10-18 07:55:14] 2025-10-18 05:54:42,481 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-18 07:55:14] 2025-10-18 05:54:42,481 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/0/PanDA_Pilot-6848017389/pilotlog.txt
[2025-10-18 07:55:14] 2025-10-18 05:54:42,499 | WARNING  | 
[2025-10-18 07:55:14] [begin log extracts]
[2025-10-18 07:55:14] - Log from pilotlog.txt -
[2025-10-18 07:55:14] 2025-10-18 05:54:41,081 | INFO     | time since job start (405s) is within the limit (172800.0s)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,463 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-18 07:55:14] 2025-10-18 05:54:42,476 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1532.137
[2025-10-18 07:55:14] 2025-10-18 05:54:42,477 | WARNING  | file does not exist either: /var/lib/boinc/slots/0/PanDA_Pilot-6848017389/memory_monitor_output.txt
[2025-10-18 07:55:14] 2025-10-18 05:54:42,478 | INFO     | memory summary dictionary not yet available
[2025-10-18 07:55:14] 2025-10-18 05:54:42,478 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 07:55:14] 2025-10-18 05:54:42,478 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | could have reported an average CPU frequency of 1760 MHz (4 samples)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | ..............................
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | . Timing measurements:
[2025-10-18 07:55:14] 2025-10-18 05:54:42,479 | INFO     | . get job = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . initial setup = 3 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . payload setup = 10 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . stage-in = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . payload execution = 186 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . stage-out = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | . log creation = 0 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,480 | INFO     | ..............................
[2025-10-18 07:55:14] 2025-10-18 05:54:42,481 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-18 07:55:14] 2025-10-18 05:54:42,481 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/0/PanDA_Pilot-6848017389/pilotlog.txt
[2025-10-18 07:55:14] [end log extracts]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,499 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,500 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-18 07:55:14] 2025-10-18 05:54:42,619 | INFO     | 
[2025-10-18 07:55:14] 2025-10-18 05:54:42,620 | INFO     | job summary report
[2025-10-18 07:55:14] 2025-10-18 05:54:42,620 | INFO     | --------------------------------------------------
[2025-10-18 07:55:14] 2025-10-18 05:54:42,620 | INFO     | PanDA job id: 6848017389
[2025-10-18 07:55:14] 2025-10-18 05:54:42,620 | INFO     | task id: 46771637
[2025-10-18 07:55:14] 2025-10-18 05:54:42,620 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-18 07:51:29,114 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-18 07:55:14] 2025-10-18 05:54:42,620 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 07:55:14] 2025-10-18 05:54:42,620 | INFO     | pilot state: failed 
[2025-10-18 07:55:14] 2025-10-18 05:54:42,621 | INFO     | transexitcode: 65
[2025-10-18 07:55:14] 2025-10-18 05:54:42,621 | INFO     | exeerrorcode: 65
[2025-10-18 07:55:14] 2025-10-18 05:54:42,621 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,621 | INFO     | exitcode: 65
[2025-10-18 07:55:14] 2025-10-18 05:54:42,621 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,621 | INFO     | cpuconsumptiontime: 156 s
[2025-10-18 07:55:14] 2025-10-18 05:54:42,621 | INFO     | nevents: 0
[2025-10-18 07:55:14] 2025-10-18 05:54:42,621 | INFO     | neventsw: 0
[2025-10-18 07:55:14] 2025-10-18 05:54:42,622 | INFO     | pid: 463752
[2025-10-18 07:55:14] 2025-10-18 05:54:42,622 | INFO     | pgrp: 463752
[2025-10-18 07:55:14] 2025-10-18 05:54:42,622 | INFO     | corecount: 2
[2025-10-18 07:55:14] 2025-10-18 05:54:42,622 | INFO     | event service: False
[2025-10-18 07:55:14] 2025-10-18 05:54:42,622 | INFO     | sizes: {0: 2348099, 1: 2348784, 2: 2348983, 10: 2349245, 13: 2349273, 260: 2372848, 262: 2377199, 386: 2377337}
[2025-10-18 07:55:14] 2025-10-18 05:54:42,622 | INFO     | --------------------------------------------------
[2025-10-18 07:55:14] 2025-10-18 05:54:42,622 | INFO     | 
[2025-10-18 07:55:14] 2025-10-18 05:54:42,623 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-18 07:55:14] 2025-10-18 05:54:42,648 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,648 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,648 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,648 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,648 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,649 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,649 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,650 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,651 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 07:55:14] 2025-10-18 05:54:42,651 | INFO     | job 6848017389 has completed (purged errors)
[2025-10-18 07:55:14] 2025-10-18 05:54:42,651 | INFO     | overall cleanup function is called
[2025-10-18 07:55:14] 2025-10-18 05:54:43,658 | INFO     | --- collectZombieJob: --- 10, [463752]
[2025-10-18 07:55:14] 2025-10-18 05:54:43,658 | INFO     | zombie collector waiting for pid 463752
[2025-10-18 07:55:14] 2025-10-18 05:54:43,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 07:55:14] 2025-10-18 05:54:43,659 | INFO     | collected zombie processes
[2025-10-18 07:55:14] 2025-10-18 05:54:43,659 | INFO     | will attempt to kill all subprocesses of pid=463752
[2025-10-18 07:55:14] 2025-10-18 05:54:43,733 | INFO     | process IDs to be killed: [463752] (in reverse order)
[2025-10-18 07:55:14] 2025-10-18 05:54:43,779 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 07:55:14] 2025-10-18 05:54:43,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 07:55:14] 2025-10-18 05:54:43,783 | INFO     | did not find any defunct processes belonging to 463752
[2025-10-18 07:55:14] 2025-10-18 05:54:43,786 | INFO     | did not find any defunct processes belonging to 463752
[2025-10-18 07:55:14] 2025-10-18 05:54:43,787 | INFO     | ready for new job
[2025-10-18 07:55:14] 2025-10-18 05:54:43,787 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 07:55:14] 2025-10-18 05:54:43,789 | INFO     | ***************************************
[2025-10-18 07:55:14] 2025-10-18 05:54:43,789 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 07:55:14] 2025-10-18 05:54:43,789 | INFO     | ***************************************
[2025-10-18 07:55:14] 2025-10-18 05:54:43,789 | INFO     | 
[2025-10-18 07:55:14] 2025-10-18 05:54:43,802 | INFO     | architecture information:
[2025-10-18 07:55:14] 2025-10-18 05:54:43,802 | INFO     | executing command: cat /etc/os-release
[2025-10-18 07:55:14] 2025-10-18 05:54:43,821 | INFO     | cat /etc/os-release:
[2025-10-18 07:55:14] NAME="CentOS Linux"
[2025-10-18 07:55:14] VERSION="7 (Core)"
[2025-10-18 07:55:14] ID="centos"
[2025-10-18 07:55:14] ID_LIKE="rhel fedora"
[2025-10-18 07:55:14] VERSION_ID="7"
[2025-10-18 07:55:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 07:55:14] ANSI_COLOR="0;31"
[2025-10-18 07:55:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 07:55:14] HOME_URL="https://www.centos.org/"
[2025-10-18 07:55:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 07:55:14] 
[2025-10-18 07:55:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 07:55:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 07:55:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 07:55:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 07:55:14] 
[2025-10-18 07:55:14] 2025-10-18 05:54:43,821 | INFO     | ***************************************
[2025-10-18 07:55:14] 2025-10-18 05:54:44,324 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-18 07:55:14] 2025-10-18 05:54:44,344 | INFO     | sufficient remaining disk space (213826666496 B)
[2025-10-18 07:55:14] 2025-10-18 05:54:44,344 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 07:55:14] 2025-10-18 05:54:44,345 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 07:55:14] 2025-10-18 05:54:44,345 | INFO     | update_server=False
[2025-10-18 07:55:14] 2025-10-18 05:54:44,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 07:55:14] 2025-10-18 05:54:44,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 07:55:14] 2025-10-18 05:54:44,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 07:55:14] 2025-10-18 05:54:44,398 | INFO     | all data control threads have been joined
[2025-10-18 07:55:14] 2025-10-18 05:54:44,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 07:55:14] 2025-10-18 05:54:44,481 | INFO     | aborting loop
[2025-10-18 07:55:14] 2025-10-18 05:54:45,202 | INFO     | all job control threads have been joined
[2025-10-18 07:55:14] 2025-10-18 05:54:45,203 | INFO     | all payload control threads have been joined
[2025-10-18 07:55:14] 2025-10-18 05:54:45,351 | INFO     | [job] retrieve thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:45,351 | INFO     | [job] queue monitor thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:45,404 | INFO     | [data] control thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:45,486 | INFO     | [job] job monitor thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:45,504 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:45,760 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:45,849 | INFO     | [payload] validate_post thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:45,870 | INFO     | [job] validate thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:46,067 | INFO     | [data] copytool_in thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:46,159 | INFO     | [payload] failed_post thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:46,205 | INFO     | [payload] control thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:46,207 | INFO     | [job] control thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:46,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 07:55:14] 2025-10-18 05:54:46,351 | INFO     | [data] copytool_out thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:46,639 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:46,841 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:50,306 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 07:55:14] 2025-10-18 05:54:56,492 | INFO     | [monitor] cgroup control has ended
[2025-10-18 07:55:14] 2025-10-18 05:54:57,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139957785630528)>', '<ExcThread(monitor, started 139957213591296)>']
[2025-10-18 07:55:14] 2025-10-18 05:55:02,900 | INFO     | all workflow threads have been joined
[2025-10-18 07:55:14] 2025-10-18 05:55:02,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 07:55:14] 2025-10-18 05:55:02,900 | INFO     | traces error code: 0
[2025-10-18 07:55:14] 2025-10-18 05:55:02,901 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 07:55:14] 2025-10-18 05:55:14,250 | INFO     | PID=457248 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-18 07:55:14] 2025-10-18 05:55:14,252 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 07:55:14] 2025-10-18 05:55:14,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 07:55:14] 2025-10-18 05:55:14,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 07:55:14] 2025-10-18 05:55:14,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 07:55:14] 2025-10-18 05:55:14,253 | INFO     | [monitor] control thread has ended
[2025-10-18 07:55:14] 2025-10-18 05:55:14,419 [wrapper] ==== pilot stdout END ====
[2025-10-18 07:55:14] 2025-10-18 05:55:14,422 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 07:55:14] 2025-10-18 05:55:14,425 [wrapper] pilotpid: 457248
[2025-10-18 07:55:14] 2025-10-18 05:55:14,429 [wrapper] Pilot exit status: 0
[2025-10-18 07:55:14] 2025-10-18 05:55:14,531 [wrapper] pandaids: 6848017389
[2025-10-18 07:55:14] 2025-10-18 05:55:14,556 [wrapper] cleanup supervisor_pilot  457254 457249
[2025-10-18 07:55:14] 2025-10-18 05:55:14,559 [wrapper] Test setup, not cleaning
[2025-10-18 07:55:14] 2025-10-18 05:55:14,563 [wrapper] apfmon messages muted
[2025-10-18 07:55:14] 2025-10-18 05:55:14,566 [wrapper] ==== wrapper stdout END ====
[2025-10-18 07:55:14] 2025-10-18 05:55:14,570 [wrapper] ==== wrapper stderr END ====
[2025-10-18 07:55:14]  *** Error codes and diagnostics ***
[2025-10-18 07:55:14]     "exeErrorCode": 65,
[2025-10-18 07:55:14]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-18 07:55:14]     "pilotErrorCode": 1305,
[2025-10-18 07:55:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-18 07:55:14]  *** Listing of results directory ***
[2025-10-18 07:55:14] total 226520
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc    557409 Oct 18 02:10 pilot3.tar.gz
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc      5112 Oct 18 02:15 queuedata.json
[2025-10-18 07:55:14] -rwx------ 1 boinc boinc     36292 Oct 18 02:17 runpilot2-wrapper.sh
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc       100 Oct 18 07:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 07:55:14] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 07:46 run_atlas
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc       105 Oct 18 07:46 job.xml
[2025-10-18 07:55:14] -rw-r--r-- 2 boinc boinc 227683206 Oct 18 07:47 EVNT.46771634._001530.pool.root.1
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc      5983 Oct 18 07:47 init_data.xml
[2025-10-18 07:55:14] drwxrwx--x 2 boinc boinc        68 Oct 18 07:47 shared
[2025-10-18 07:55:14] -rw-r--r-- 2 boinc boinc    569679 Oct 18 07:47 input.tar.gz
[2025-10-18 07:55:14] -rw-r--r-- 2 boinc boinc     15120 Oct 18 07:47 start_atlas.sh
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc         0 Oct 18 07:47 boinc_lockfile
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc      2557 Oct 18 07:47 pandaJob.out
[2025-10-18 07:55:14] -rw------- 1 boinc boinc    976749 Oct 18 07:47 agis_schedconf.cvmfs.json
[2025-10-18 07:55:14] -rw------- 1 boinc boinc   1560740 Oct 18 07:47 agis_ddmendpoints.agis.ALL.json
[2025-10-18 07:55:14] drwx------ 5 boinc boinc      4096 Oct 18 07:47 pilot3
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc       524 Oct 18 07:51 boinc_task_state.xml
[2025-10-18 07:55:14] -rw------- 1 boinc boinc     47519 Oct 18 07:52 log.46771637._034564.job.log.tgz.1
[2025-10-18 07:55:14] -rw------- 1 boinc boinc      8063 Oct 18 07:54 heartbeat.json
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc        23 Oct 18 07:55 wrapper_checkpoint.txt
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc      8192 Oct 18 07:55 boinc_mmap_file
[2025-10-18 07:55:14] -rw------- 1 boinc boinc        95 Oct 18 07:55 pilot_heartbeat.json
[2025-10-18 07:55:14] -rw------- 1 boinc boinc       746 Oct 18 07:55 pilotlog.txt
[2025-10-18 07:55:14] -rw------- 1 boinc boinc    151544 Oct 18 07:55 log.46771637._034564.job.log.1
[2025-10-18 07:55:14] -rw------- 1 boinc boinc       188 Oct 18 07:55 output.list
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc       620 Oct 18 07:55 runtime_log
[2025-10-18 07:55:14] -rw------- 1 boinc boinc    215040 Oct 18 07:55 result.tar.gz
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc      8505 Oct 18 07:55 runtime_log.err
[2025-10-18 07:55:14] -rw------- 1 boinc boinc       640 Oct 18 07:55 4bfNDm4o9T8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFUvNDmR4ADVo.diag
[2025-10-18 07:55:14] -rw-r--r-- 1 boinc boinc     21887 Oct 18 07:55 stderr.txt
[2025-10-18 07:55:14] No HITS result produced
[2025-10-18 07:55:14]  *** Contents of shared directory: ***
[2025-10-18 07:55:14] total 223136
[2025-10-18 07:55:14] -rw-r--r-- 2 boinc boinc 227683206 Oct 18 07:47 ATLAS.root_0
[2025-10-18 07:55:14] -rw-r--r-- 2 boinc boinc    569679 Oct 18 07:47 input.tar.gz
[2025-10-18 07:55:14] -rw-r--r-- 2 boinc boinc     15120 Oct 18 07:47 start_atlas.sh
[2025-10-18 07:55:14] -rw------- 1 boinc boinc    215040 Oct 18 07:55 result.tar.gz
07:55:15 (453624): run_atlas exited; CPU time 136.781893
07:55:15 (453624): called boinc_finish(0)

</stderr_txt>
]]>

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