Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:07 (981312): wrapper (7.7.26015): starting
00:03:07 (981312): wrapper: running run_atlas (--nthreads 9)
[2025-10-18 00:03:07] Arguments: --nthreads 9
[2025-10-18 00:03:07] Threads: 9
[2025-10-18 00:03:07] Checking for CVMFS
[2025-10-18 00:03:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 00:03:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 00:03:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 00:03:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 00:03:09] 2.13.2.0 941838 146223 280856 151838 1 279 31280673 32935936 13308 16776704 0 127075627 99.724 98195045 30077 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-18 00:03:09] CVMFS is ok
[2025-10-18 00:03:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 00:03:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 00:03:09] Further information can be found at the LHC@home message board.
[2025-10-18 00:03:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 00:03:09] Checking for apptainer binary...
[2025-10-18 00:03:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 00:03:09] Running /usr/bin/apptainer --version
[2025-10-18 00:03:09] apptainer version 1.4.3-1.el9
[2025-10-18 00:03:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 00:03:10] c-6-7.aglt2.org
[2025-10-18 00:03:10] apptainer works
[2025-10-18 00:03:10] Set ATHENA_PROC_NUMBER=9
[2025-10-18 00:03:10] Set ATHENA_CORE_NUMBER=9
[2025-10-18 00:03:10] Starting ATLAS job with PandaID=6848015663
[2025-10-18 00:03:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 05:35:40]  *** The last 200 lines of the pilot log: ***
[2025-10-18 05:35:40] 2025-10-18 09:34:32,121 | INFO     | chi2: 1.1998256359320416
[2025-10-18 05:35:40] 2025-10-18 09:34:32,121 | INFO     | current chi2=1.1998256359320416 (change=67.80200578687673 %)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,122 | INFO     | sum of square deviations: 9507385672.498354
[2025-10-18 05:35:40] 2025-10-18 09:34:32,124 | INFO     | sum of deviations: 60901617522.48558
[2025-10-18 05:35:40] 2025-10-18 09:34:32,124 | INFO     | mean x: 1760770486.8083067
[2025-10-18 05:35:40] 2025-10-18 09:34:32,124 | INFO     | mean y: 2124592.274760383
[2025-10-18 05:35:40] 2025-10-18 09:34:32,124 | INFO     | -- intersect: -11276872013.771338
[2025-10-18 05:35:40] 2025-10-18 09:34:32,124 | INFO     | intersect: -11276872013.771338
[2025-10-18 05:35:40] 2025-10-18 09:34:32,125 | INFO     | chi2: 0.7599616162013952
[2025-10-18 05:35:40] 2025-10-18 09:34:32,125 | INFO     | current chi2=0.7599616162013952 (change=36.66066189600573 %)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,125 | INFO     | sum of square deviations: 9058891038.818148
[2025-10-18 05:35:40] 2025-10-18 09:34:32,127 | INFO     | sum of deviations: 40109063710.31819
[2025-10-18 05:35:40] 2025-10-18 09:34:32,127 | INFO     | mean x: 1760770639.3181818
[2025-10-18 05:35:40] 2025-10-18 09:34:32,127 | INFO     | mean y: 2131678.6396103897
[2025-10-18 05:35:40] 2025-10-18 09:34:32,127 | INFO     | -- intersect: -7793840416.514802
[2025-10-18 05:35:40] 2025-10-18 09:34:32,127 | INFO     | intersect: -7793840416.514802
[2025-10-18 05:35:40] 2025-10-18 09:34:32,128 | INFO     | chi2: 0.5573973919555603
[2025-10-18 05:35:40] 2025-10-18 09:34:32,128 | INFO     | current chi2=0.5573973919555603 (change=26.654533587937685 %)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,128 | INFO     | sum of square deviations: 8624722499.075905
[2025-10-18 05:35:40] 2025-10-18 09:34:32,130 | INFO     | sum of deviations: 16970310121.683157
[2025-10-18 05:35:40] 2025-10-18 09:34:32,130 | INFO     | mean x: 1760770791.8283827
[2025-10-18 05:35:40] 2025-10-18 09:34:32,130 | INFO     | mean y: 2139803.4554455443
[2025-10-18 05:35:40] 2025-10-18 09:34:32,130 | INFO     | -- intersect: -3462415304.69219
[2025-10-18 05:35:40] 2025-10-18 09:34:32,131 | INFO     | intersect: -3462415304.69219
[2025-10-18 05:35:40] 2025-10-18 09:34:32,131 | INFO     | chi2: 0.30462911135085413
[2025-10-18 05:35:40] 2025-10-18 09:34:32,131 | INFO     | current chi2=0.30462911135085413 (change=45.34794820583923 %)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,131 | INFO     | sum of square deviations: 8204702451.771783
[2025-10-18 05:35:40] 2025-10-18 09:34:32,133 | INFO     | sum of deviations: 7029633261.590601
[2025-10-18 05:35:40] 2025-10-18 09:34:32,134 | INFO     | mean x: 1760770944.328859
[2025-10-18 05:35:40] 2025-10-18 09:34:32,134 | INFO     | mean y: 2143386.9429530203
[2025-10-18 05:35:40] 2025-10-18 09:34:32,143 | INFO     | -- intersect: -1506451722.8801384
[2025-10-18 05:35:40] 2025-10-18 09:34:32,143 | INFO     | intersect: -1506451722.8801384
[2025-10-18 05:35:40] 2025-10-18 09:34:32,144 | INFO     | chi2: 0.22193605067630595
[2025-10-18 05:35:40] 2025-10-18 09:34:32,144 | INFO     | current chi2=0.22193605067630595 (change=27.145488593605588 %)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,144 | INFO     | sum of square deviations: 7798506896.136512
[2025-10-18 05:35:40] 2025-10-18 09:34:32,147 | INFO     | sum of deviations: 2193245738.3139915
[2025-10-18 05:35:40] 2025-10-18 09:34:32,147 | INFO     | mean x: 1760771096.8361776
[2025-10-18 05:35:40] 2025-10-18 09:34:32,147 | INFO     | mean y: 2145199.423208191
[2025-10-18 05:35:40] 2025-10-18 09:34:32,147 | INFO     | -- intersect: -493052632.1252373
[2025-10-18 05:35:40] 2025-10-18 09:34:32,147 | INFO     | intersect: -493052632.1252373
[2025-10-18 05:35:40] 2025-10-18 09:34:32,148 | INFO     | chi2: 0.20815889212271604
[2025-10-18 05:35:40] 2025-10-18 09:34:32,148 | INFO     | current chi2=0.20815889212271604 (change=6.207715471013726 %)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,148 | INFO     | left removable region: 60
[2025-10-18 05:35:40] 2025-10-18 09:34:32,149 | INFO     | sum of square deviations: 5262204469.727628
[2025-10-18 05:35:40] 2025-10-18 09:34:32,151 | INFO     | sum of deviations: -5086238877.260703
[2025-10-18 05:35:40] 2025-10-18 09:34:32,151 | INFO     | mean x: 1760771828.8871596
[2025-10-18 05:35:40] 2025-10-18 09:34:32,151 | INFO     | mean y: 2148986.1634241245
[2025-10-18 05:35:40] 2025-10-18 09:34:32,151 | INFO     | -- intersect: 1704041449.9761899
[2025-10-18 05:35:40] 2025-10-18 09:34:32,151 | INFO     | intersect: 1704041449.9761899
[2025-10-18 05:35:40] 2025-10-18 09:34:32,152 | INFO     | chi2: 0.14966366109457713
[2025-10-18 05:35:40] 2025-10-18 09:34:32,152 | INFO     | -- intersect: 1704041449.9761899
[2025-10-18 05:35:40] 2025-10-18 09:34:32,152 | INFO     | current memory leak: -0.97 B/s (using 257 data points, chi2=0.15)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,153 | INFO     | could have reported an average CPU frequency of 2607 MHz (14 samples)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,153 | INFO     | ..............................
[2025-10-18 05:35:40] 2025-10-18 09:34:32,153 | INFO     | . Timing measurements:
[2025-10-18 05:35:40] 2025-10-18 09:34:32,153 | INFO     | . get job = 0 s
[2025-10-18 05:35:40] 2025-10-18 09:34:32,153 | INFO     | . initial setup = 5 s
[2025-10-18 05:35:40] 2025-10-18 09:34:32,154 | INFO     | . payload setup = 34 s
[2025-10-18 05:35:40] 2025-10-18 09:34:32,154 | INFO     | . stage-in = 0 s
[2025-10-18 05:35:40] 2025-10-18 09:34:32,154 | INFO     | . payload execution = 19726 s
[2025-10-18 05:35:40] 2025-10-18 09:34:32,154 | INFO     | . stage-out = 2 s
[2025-10-18 05:35:40] 2025-10-18 09:34:32,154 | INFO     | . log creation = 0 s
[2025-10-18 05:35:40] 2025-10-18 09:34:32,154 | INFO     | ..............................
[2025-10-18 05:35:40] 2025-10-18 09:34:32,323 | INFO     | 
[2025-10-18 05:35:40] 2025-10-18 09:34:32,323 | INFO     | job summary report
[2025-10-18 05:35:40] 2025-10-18 09:34:32,323 | INFO     | --------------------------------------------------
[2025-10-18 05:35:40] 2025-10-18 09:34:32,323 | INFO     | PanDA job id: 6848015663
[2025-10-18 05:35:40] 2025-10-18 09:34:32,323 | INFO     | task id: 46771637
[2025-10-18 05:35:40] 2025-10-18 09:34:32,323 | INFO     | errors: (none)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,323 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 05:35:40] 2025-10-18 09:34:32,323 | INFO     | pilot state: finished 
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | transexitcode: 0
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | exeerrorcode: 0
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | exeerrordiag: 
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | exitcode: 0
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | exitmsg: OK
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | cpuconsumptiontime: 54189 s
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | nevents: 400
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | neventsw: 0
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | pid: 1010869
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | pgrp: 1010869
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | corecount: 9
[2025-10-18 05:35:40] 2025-10-18 09:34:32,324 | INFO     | event service: False
[2025-10-18 05:35:40] 2025-10-18 09:34:32,325 | INFO     | sizes: {0: 2348050, 1: 2348735, 2: 2348934, 12: 2348934, 24: 2348962, 29: 2349252, 36: 2349408, 19764: 2382493, 19767: 2391491, 19768: 2391547, 19775: 2391741}
[2025-10-18 05:35:40] 2025-10-18 09:34:32,325 | INFO     | --------------------------------------------------
[2025-10-18 05:35:40] 2025-10-18 09:34:32,325 | INFO     | 
[2025-10-18 05:35:40] 2025-10-18 09:34:32,325 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-18 05:35:40] 2025-10-18 09:34:32,444 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,444 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,444 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,444 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,446 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,446 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,446 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 05:35:40] 2025-10-18 09:34:32,447 | INFO     | job 6848015663 has completed (purged errors)
[2025-10-18 05:35:40] 2025-10-18 09:34:32,447 | INFO     | overall cleanup function is called
[2025-10-18 05:35:40] 2025-10-18 09:34:32,519 | INFO     | PID=989388 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 05:35:40] 2025-10-18 09:34:32,519 | INFO     | .. there are 34 such processes running
[2025-10-18 05:35:40] 2025-10-18 09:34:33,459 | INFO     | --- collectZombieJob: --- 10, [1010869]
[2025-10-18 05:35:40] 2025-10-18 09:34:33,459 | INFO     | zombie collector waiting for pid 1010869
[2025-10-18 05:35:40] 2025-10-18 09:34:33,459 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 05:35:40] 2025-10-18 09:34:33,459 | INFO     | collected zombie processes
[2025-10-18 05:35:40] 2025-10-18 09:34:33,459 | INFO     | will attempt to kill all subprocesses of pid=1010869
[2025-10-18 05:35:40] 2025-10-18 09:34:33,845 | INFO     | process IDs to be killed: [1010869] (in reverse order)
[2025-10-18 05:35:40] 2025-10-18 09:34:33,952 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 05:35:40] 2025-10-18 09:34:33,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 05:35:40] 2025-10-18 09:34:33,967 | INFO     | did not find any defunct processes belonging to 1010869
[2025-10-18 05:35:40] 2025-10-18 09:34:33,983 | INFO     | did not find any defunct processes belonging to 1010869
[2025-10-18 05:35:40] 2025-10-18 09:34:33,983 | INFO     | ready for new job
[2025-10-18 05:35:40] 2025-10-18 09:34:33,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 05:35:40] 2025-10-18 09:34:33,986 | INFO     | ***************************************
[2025-10-18 05:35:40] 2025-10-18 09:34:33,987 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 05:35:40] 2025-10-18 09:34:33,987 | INFO     | ***************************************
[2025-10-18 05:35:40] 2025-10-18 09:34:33,987 | INFO     | 
[2025-10-18 05:35:40] 2025-10-18 09:34:34,001 | INFO     | architecture information:
[2025-10-18 05:35:40] 2025-10-18 09:34:34,001 | INFO     | executing command: cat /etc/os-release
[2025-10-18 05:35:40] 2025-10-18 09:34:34,016 | INFO     | cat /etc/os-release:
[2025-10-18 05:35:40] NAME="CentOS Linux"
[2025-10-18 05:35:40] VERSION="7 (Core)"
[2025-10-18 05:35:40] ID="centos"
[2025-10-18 05:35:40] ID_LIKE="rhel fedora"
[2025-10-18 05:35:40] VERSION_ID="7"
[2025-10-18 05:35:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 05:35:40] ANSI_COLOR="0;31"
[2025-10-18 05:35:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 05:35:40] HOME_URL="https://www.centos.org/"
[2025-10-18 05:35:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 05:35:40] 
[2025-10-18 05:35:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 05:35:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 05:35:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 05:35:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 05:35:40] 
[2025-10-18 05:35:40] 2025-10-18 09:34:34,017 | INFO     | ***************************************
[2025-10-18 05:35:40] 2025-10-18 09:34:34,520 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-18 05:35:40] 2025-10-18 09:34:34,536 | INFO     | sufficient remaining disk space (74437361664 B)
[2025-10-18 05:35:40] 2025-10-18 09:34:34,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 05:35:40] 2025-10-18 09:34:34,537 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 05:35:40] 2025-10-18 09:34:34,537 | INFO     | update_server=False
[2025-10-18 05:35:40] 2025-10-18 09:34:34,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 05:35:40] 2025-10-18 09:34:34,567 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 05:35:40] 2025-10-18 09:34:34,567 | INFO     | aborting loop
[2025-10-18 05:35:40] 2025-10-18 09:34:34,899 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 05:35:40] 2025-10-18 09:34:34,913 | INFO     | all data control threads have been joined
[2025-10-18 05:35:40] 2025-10-18 09:34:35,436 | INFO     | all payload control threads have been joined
[2025-10-18 05:35:40] 2025-10-18 09:34:35,542 | INFO     | [job] retrieve thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:35,567 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:35,573 | INFO     | [job] job monitor thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:35,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 05:35:40] 2025-10-18 09:34:35,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:35,918 | INFO     | [data] control thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:36,028 | INFO     | [data] copytool_in thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:36,038 | INFO     | all job control threads have been joined
[2025-10-18 05:35:40] 2025-10-18 09:34:36,276 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:36,350 | INFO     | [payload] validate_post thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:36,441 | INFO     | [payload] control thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:36,707 | INFO     | [payload] failed_post thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:36,776 | INFO     | [job] validate thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:36,846 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:36,906 | INFO     | [data] copytool_out thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:37,043 | INFO     | [job] control thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:37,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 05:35:40] 2025-10-18 09:34:38,339 | INFO     | [job] queue monitor thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:34:39,605 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 05:35:40] 2025-10-18 09:35:05,088 | INFO     | PID=989388 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-18 05:35:40] 2025-10-18 09:35:05,088 | INFO     | .. there are 34 such processes running
[2025-10-18 05:35:40] 2025-10-18 09:35:05,089 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 05:35:40] 2025-10-18 09:35:05,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 05:35:40] 2025-10-18 09:35:05,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 05:35:40] 2025-10-18 09:35:34,525 | INFO     | [monitor] cgroup control has ended
[2025-10-18 05:35:40] 2025-10-18 09:35:35,459 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139764970616640)>', '<ExcThread(monitor, started 139764688717568)>']
[2025-10-18 05:35:40] 2025-10-18 09:35:36,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 05:35:40] 2025-10-18 09:35:36,231 | INFO     | [monitor] control thread has ended
[2025-10-18 05:35:40] 2025-10-18 09:35:40,484 | INFO     | all workflow threads have been joined
[2025-10-18 05:35:40] 2025-10-18 09:35:40,484 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 05:35:40] 2025-10-18 09:35:40,485 | INFO     | traces error code: 0
[2025-10-18 05:35:40] 2025-10-18 09:35:40,485 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 05:35:40] 2025-10-18 09:35:40,594 [wrapper] ==== pilot stdout END ====
[2025-10-18 05:35:40] 2025-10-18 09:35:40,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 05:35:40] 2025-10-18 09:35:40,598 [wrapper] pilotpid: 989388
[2025-10-18 05:35:40] 2025-10-18 09:35:40,600 [wrapper] Pilot exit status: 0
[2025-10-18 05:35:40] 2025-10-18 09:35:40,606 [wrapper] pandaids: 6848015663
[2025-10-18 05:35:40] 2025-10-18 09:35:40,654 [wrapper] cleanup supervisor_pilot 2234752 989389
[2025-10-18 05:35:40] 2025-10-18 09:35:40,656 [wrapper] Test setup, not cleaning
[2025-10-18 05:35:40] 2025-10-18 09:35:40,658 [wrapper] apfmon messages muted
[2025-10-18 05:35:40] 2025-10-18 09:35:40,660 [wrapper] ==== wrapper stdout END ====
[2025-10-18 05:35:40] 2025-10-18 09:35:40,661 [wrapper] ==== wrapper stderr END ====
[2025-10-18 05:35:40]  *** Error codes and diagnostics ***
[2025-10-18 05:35:40]     "exeErrorCode": 0,
[2025-10-18 05:35:40]     "exeErrorDiag": "",
[2025-10-18 05:35:40]     "pilotErrorCode": 0,
[2025-10-18 05:35:40]     "pilotErrorDiag": "",
[2025-10-18 05:35:40]  *** Listing of results directory ***
[2025-10-18 05:35:40] total 440192
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas    557409 Oct 17 19:20 pilot3.tar.gz
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas      5112 Oct 17 19:23 queuedata.json
[2025-10-18 05:35:40] -rwx------. 1 boincer umatlas     36292 Oct 17 19:23 runpilot2-wrapper.sh
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas       100 Oct 18 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 05:35:40] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 18 00:03 run_atlas
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas       105 Oct 18 00:03 job.xml
[2025-10-18 05:35:40] -rw-r--r--. 2 boincer umatlas 231098750 Oct 18 00:03 EVNT.46771634._001496.pool.root.1
[2025-10-18 05:35:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 18 00:03 start_atlas.sh
[2025-10-18 05:35:40] drwxrwx--x. 2 boincer umatlas      4096 Oct 18 00:03 shared
[2025-10-18 05:35:40] -rw-r--r--. 2 boincer umatlas    569673 Oct 18 00:03 input.tar.gz
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas         0 Oct 18 00:03 boinc_lockfile
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas      2557 Oct 18 00:03 pandaJob.out
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas    976741 Oct 18 00:03 agis_schedconf.cvmfs.json
[2025-10-18 05:35:40] drwx------. 5 boincer umatlas      4096 Oct 18 00:04 pilot3
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas      6659 Oct 18 05:28 init_data.xml
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas       531 Oct 18 05:33 boinc_task_state.xml
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas 209723919 Oct 18 05:33 HITS.46771637._033802.pool.root.1
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas      1041 Oct 18 05:34 memory_monitor_summary.json
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas   1560740 Oct 18 05:34 agis_ddmendpoints.agis.ALL.json
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas    549113 Oct 18 05:34 log.46771637._033802.job.log.tgz.1
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas      7821 Oct 18 05:34 heartbeat.json
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas        95 Oct 18 05:35 pilot_heartbeat.json
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas        28 Oct 18 05:35 wrapper_checkpoint.txt
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas      8192 Oct 18 05:35 boinc_mmap_file
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas      4823 Oct 18 05:35 pilotlog.txt
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas   2462390 Oct 18 05:35 log.46771637._033802.job.log.1
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas       357 Oct 18 05:35 output.list
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas       620 Oct 18 05:35 runtime_log
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas   3031040 Oct 18 05:35 result.tar.gz
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas      8689 Oct 18 05:35 runtime_log.err
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas       653 Oct 18 05:35 alYKDmQy8T8n9Rq4apOajLDm4fhM0noT9bVof3QYDm41aMDmAM7D1n.diag
[2025-10-18 05:35:40] -rw-r--r--. 1 boincer umatlas     21201 Oct 18 05:35 stderr.txt
[2025-10-18 05:35:40] HITS file was successfully produced:
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas 209723919 Oct 18 05:33 shared/HITS.pool.root.1
[2025-10-18 05:35:40]  *** Contents of shared directory: ***
[2025-10-18 05:35:40] total 434040
[2025-10-18 05:35:40] -rw-r--r--. 2 boincer umatlas 231098750 Oct 18 00:03 ATLAS.root_0
[2025-10-18 05:35:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 18 00:03 start_atlas.sh
[2025-10-18 05:35:40] -rw-r--r--. 2 boincer umatlas    569673 Oct 18 00:03 input.tar.gz
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas 209723919 Oct 18 05:33 HITS.pool.root.1
[2025-10-18 05:35:40] -rw-------. 1 boincer umatlas   3031040 Oct 18 05:35 result.tar.gz
05:35:42 (981312): run_atlas exited; CPU time 55043.762763
05:35:42 (981312): called boinc_finish(0)

</stderr_txt>
]]>

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