Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:35:06 (8054): wrapper (7.7.26015): starting
15:35:06 (8054): wrapper: running run_atlas (--nthreads 8)
[2025-10-18 15:35:06] Arguments: --nthreads 8
[2025-10-18 15:35:06] Threads: 8
[2025-10-18 15:35:06] Checking for CVMFS
[2025-10-18 15:35:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 15:35:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 15:35:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 15:35:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 15:35:09] 2.11.2.0 6410 229077 136952 151852 2 162 14866346 25165824 4632 130560 0 116410021 99.885 67802461 3284 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-18 15:35:09] CVMFS is ok
[2025-10-18 15:35:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 15:35:09] Checking for apptainer binary...
[2025-10-18 15:35:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 15:35:09] Running /usr/bin/apptainer --version
[2025-10-18 15:35:09] apptainer version 1.3.2-1.el7
[2025-10-18 15:35:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 15:35:22] cg-vwn284.simple-grid.lan
[2025-10-18 15:35:22] apptainer works
[2025-10-18 15:35:22] Set ATHENA_PROC_NUMBER=8
[2025-10-18 15:35:22] Set ATHENA_CORE_NUMBER=8
[2025-10-18 15:35:22] Starting ATLAS job with PandaID=6848007241
[2025-10-18 15:35:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 20:02:41]  *** The last 200 lines of the pilot log: ***
[2025-10-18 20:02:41] 2025-10-18 18:01:29,636 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-18 20:02:41] 2025-10-18 18:01:29,638 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6848007241/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 20:02:41] 2025-10-18 18:01:29,639 | INFO     | extracted standard info from prmon json
[2025-10-18 20:02:41] 2025-10-18 18:01:29,639 | INFO     | extracted standard memory fields from prmon json
[2025-10-18 20:02:41] 2025-10-18 18:01:29,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 20:02:41] 2025-10-18 18:01:29,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 20:02:41] 2025-10-18 18:01:29,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 20:02:41] 2025-10-18 18:01:29,645 | INFO     | fitting pss+swap vs Time
[2025-10-18 20:02:41] 2025-10-18 18:01:29,646 | INFO     | sum of square deviations: 4787066500.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,648 | INFO     | sum of deviations: 79458600244.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,649 | INFO     | mean x: 1760802788.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,649 | INFO     | mean y: 2449730.301204819
[2025-10-18 20:02:41] 2025-10-18 18:01:29,649 | INFO     | -- intersect: -29224410778.156883
[2025-10-18 20:02:41] 2025-10-18 18:01:29,649 | INFO     | intersect: -29224410778.156883
[2025-10-18 20:02:41] 2025-10-18 18:01:29,650 | INFO     | chi2: 5.022701289052638
[2025-10-18 20:02:41] 2025-10-18 18:01:29,650 | INFO     | sum of square deviations: 4504437945.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,652 | INFO     | sum of deviations: 94169231442.5
[2025-10-18 20:02:41] 2025-10-18 18:01:29,652 | INFO     | mean x: 1760802635.5
[2025-10-18 20:02:41] 2025-10-18 18:01:29,653 | INFO     | mean y: 2457522.479508197
[2025-10-18 20:02:41] 2025-10-18 18:01:29,653 | INFO     | -- intersect: -36808668067.788445
[2025-10-18 20:02:41] 2025-10-18 18:01:29,653 | INFO     | intersect: -36808668067.788445
[2025-10-18 20:02:41] 2025-10-18 18:01:29,653 | INFO     | chi2: 4.280085257537964
[2025-10-18 20:02:41] 2025-10-18 18:01:29,653 | INFO     | current chi2=4.280085257537964 (change=14.785192046623653 %)
[2025-10-18 20:02:41] 2025-10-18 18:01:29,653 | INFO     | right removable region: 243
[2025-10-18 20:02:41] 2025-10-18 18:01:29,654 | INFO     | sum of square deviations: 4504437945.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,656 | INFO     | sum of deviations: 835303896.5
[2025-10-18 20:02:41] 2025-10-18 18:01:29,656 | INFO     | mean x: 1760802940.5
[2025-10-18 20:02:41] 2025-10-18 18:01:29,656 | INFO     | mean y: 2492079.2418032787
[2025-10-18 20:02:41] 2025-10-18 18:01:29,657 | INFO     | -- intersect: -324031579.2317086
[2025-10-18 20:02:41] 2025-10-18 18:01:29,657 | INFO     | intersect: -324031579.2317086
[2025-10-18 20:02:41] 2025-10-18 18:01:29,657 | INFO     | chi2: 1.1465775633380153
[2025-10-18 20:02:41] 2025-10-18 18:01:29,657 | INFO     | current chi2=1.1465775633380153 (change=77.17209331486488 %)
[2025-10-18 20:02:41] 2025-10-18 18:01:29,658 | INFO     | sum of square deviations: 4233158440.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,659 | INFO     | sum of deviations: -15239470912.000004
[2025-10-18 20:02:41] 2025-10-18 18:01:29,660 | INFO     | mean x: 1760803093.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,660 | INFO     | mean y: 2501026.158995816
[2025-10-18 20:02:41] 2025-10-18 18:01:29,660 | INFO     | -- intersect: 6341433976.075498
[2025-10-18 20:02:41] 2025-10-18 18:01:29,660 | INFO     | intersect: 6341433976.075498
[2025-10-18 20:02:41] 2025-10-18 18:01:29,660 | INFO     | chi2: 0.8628292206452599
[2025-10-18 20:02:41] 2025-10-18 18:01:29,661 | INFO     | current chi2=0.8628292206452599 (change=24.74741803482381 %)
[2025-10-18 20:02:41] 2025-10-18 18:01:29,661 | INFO     | left removable region: 20
[2025-10-18 20:02:41] 2025-10-18 18:01:29,661 | INFO     | sum of square deviations: 3438620752.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,663 | INFO     | sum of deviations: 11853688909.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,663 | INFO     | mean x: 1760803215.0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,663 | INFO     | mean y: 2503190.260089686
[2025-10-18 20:02:41] 2025-10-18 18:01:29,663 | INFO     | -- intersect: -6067376289.306618
[2025-10-18 20:02:41] 2025-10-18 18:01:29,664 | INFO     | intersect: -6067376289.306618
[2025-10-18 20:02:41] 2025-10-18 18:01:29,664 | INFO     | chi2: 0.0021196709240947696
[2025-10-18 20:02:41] 2025-10-18 18:01:29,664 | INFO     | -- intersect: -6067376289.306618
[2025-10-18 20:02:41] 2025-10-18 18:01:29,664 | INFO     | current memory leak: 3.45 B/s (using 223 data points, chi2=0.00)
[2025-10-18 20:02:41] 2025-10-18 18:01:29,665 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | ..............................
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | . Timing measurements:
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | . get job = 0 s
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | . initial setup = 9 s
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | . payload setup = 121 s
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | . stage-in = 0 s
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | . payload execution = 15332 s
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | . stage-out = 1 s
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | . log creation = 0 s
[2025-10-18 20:02:41] 2025-10-18 18:01:29,666 | INFO     | ..............................
[2025-10-18 20:02:41] 2025-10-18 18:01:29,814 | INFO     | 
[2025-10-18 20:02:41] 2025-10-18 18:01:29,814 | INFO     | job summary report
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | --------------------------------------------------
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | PanDA job id: 6848007241
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | task id: 46771637
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | errors: (none)
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | pilot state: finished 
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | transexitcode: 0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | exeerrorcode: 0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | exeerrordiag: 
[2025-10-18 20:02:41] 2025-10-18 18:01:29,815 | INFO     | exitcode: 0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | exitmsg: OK
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | cpuconsumptiontime: 57704 s
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | nevents: 400
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | neventsw: 0
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | pid: 18398
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | pgrp: 18398
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | corecount: 8
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | event service: False
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | sizes: {0: 2348099, 1: 2348785, 2: 2348984, 13: 2348984, 23: 2349040, 34: 2349068, 45: 2349224, 56: 2349252, 66: 2349280, 77: 2349308, 88: 2349364, 90: 2349934, 98
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | --------------------------------------------------
[2025-10-18 20:02:41] 2025-10-18 18:01:29,816 | INFO     | 
[2025-10-18 20:02:41] 2025-10-18 18:01:29,817 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-10-18 20:02:41] 2025-10-18 18:01:30,194 | INFO     | time since job start (15744s) is within the limit (172800.0s)
[2025-10-18 20:02:41] 2025-10-18 18:01:30,511 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,511 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,511 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,511 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,513 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,513 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 20:02:41] 2025-10-18 18:01:30,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,513 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 20:02:41] 2025-10-18 18:01:30,513 | INFO     | job 6848007241 has completed (purged errors)
[2025-10-18 20:02:41] 2025-10-18 18:01:30,513 | INFO     | overall cleanup function is called
[2025-10-18 20:02:41] 2025-10-18 18:01:31,522 | INFO     | --- collectZombieJob: --- 10, [18398]
[2025-10-18 20:02:41] 2025-10-18 18:01:31,522 | INFO     | zombie collector waiting for pid 18398
[2025-10-18 20:02:41] 2025-10-18 18:01:31,522 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 20:02:41] 2025-10-18 18:01:31,523 | INFO     | collected zombie processes
[2025-10-18 20:02:41] 2025-10-18 18:01:31,523 | INFO     | will attempt to kill all subprocesses of pid=18398
[2025-10-18 20:02:41] 2025-10-18 18:01:31,636 | INFO     | process IDs to be killed: [18398] (in reverse order)
[2025-10-18 20:02:41] 2025-10-18 18:01:32,685 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 20:02:41] 2025-10-18 18:01:32,685 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 20:02:41] 2025-10-18 18:01:32,688 | INFO     | did not find any defunct processes belonging to 18398
[2025-10-18 20:02:41] 2025-10-18 18:01:32,691 | INFO     | did not find any defunct processes belonging to 18398
[2025-10-18 20:02:41] 2025-10-18 18:01:32,691 | INFO     | ready for new job
[2025-10-18 20:02:41] 2025-10-18 18:01:32,691 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 20:02:41] 2025-10-18 18:01:32,694 | INFO     | ***************************************
[2025-10-18 20:02:41] 2025-10-18 18:01:32,694 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 20:02:41] 2025-10-18 18:01:32,694 | INFO     | ***************************************
[2025-10-18 20:02:41] 2025-10-18 18:01:32,694 | INFO     | 
[2025-10-18 20:02:41] 2025-10-18 18:01:32,695 | INFO     | pilot is running in a VM
[2025-10-18 20:02:41] 2025-10-18 18:01:32,695 | INFO     | architecture information:
[2025-10-18 20:02:41] 2025-10-18 18:01:32,697 | INFO     | executing command: cat /etc/os-release
[2025-10-18 20:02:41] 2025-10-18 18:01:32,992 | INFO     | cat /etc/os-release:
[2025-10-18 20:02:41] NAME="CentOS Linux"
[2025-10-18 20:02:41] VERSION="7 (Core)"
[2025-10-18 20:02:41] ID="centos"
[2025-10-18 20:02:41] ID_LIKE="rhel fedora"
[2025-10-18 20:02:41] VERSION_ID="7"
[2025-10-18 20:02:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 20:02:41] ANSI_COLOR="0;31"
[2025-10-18 20:02:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 20:02:41] HOME_URL="https://www.centos.org/"
[2025-10-18 20:02:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 20:02:41] 
[2025-10-18 20:02:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 20:02:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 20:02:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 20:02:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 20:02:41] 
[2025-10-18 20:02:41] 2025-10-18 18:01:32,992 | INFO     | ***************************************
[2025-10-18 20:02:41] 2025-10-18 18:01:33,495 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-10-18 20:02:41] 2025-10-18 18:01:33,779 | INFO     | sufficient remaining disk space (496104374272 B)
[2025-10-18 20:02:41] 2025-10-18 18:01:33,779 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 20:02:41] 2025-10-18 18:01:33,779 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 20:02:41] 2025-10-18 18:01:33,779 | INFO     | update_server=False
[2025-10-18 20:02:41] 2025-10-18 18:01:33,780 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 20:02:41] 2025-10-18 18:01:33,780 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 20:02:41] 2025-10-18 18:01:33,815 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 20:02:41] 2025-10-18 18:01:33,827 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-18 20:02:41] 2025-10-18 18:01:33,827 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-18 20:02:41] 2025-10-18 18:01:33,828 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 20:02:41] 2025-10-18 18:01:33,828 | INFO     | will abort loop
[2025-10-18 20:02:41] 2025-10-18 18:01:34,131 | INFO     | all data control threads have been joined
[2025-10-18 20:02:41] 2025-10-18 18:01:34,785 | INFO     | [job] retrieve thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:34,833 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 20:02:41] 2025-10-18 18:01:34,834 | INFO     | [job] job monitor thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:34,885 | INFO     | all job control threads have been joined
[2025-10-18 20:02:41] 2025-10-18 18:01:35,022 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:35,044 | INFO     | all payload control threads have been joined
[2025-10-18 20:02:41] 2025-10-18 18:01:35,065 | INFO     | [payload] validate_post thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:35,137 | INFO     | [data] control thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:35,557 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:35,574 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:35,787 | INFO     | [data] copytool_out thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:35,838 | INFO     | [job] queue monitor thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:35,888 | INFO     | [data] copytool_in thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:35,891 | INFO     | [job] control thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:36,014 | INFO     | [job] validate thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:36,050 | INFO     | [payload] control thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:36,232 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:36,234 | INFO     | [payload] failed_post thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:01:37,824 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 20:02:41] 2025-10-18 18:02:03,386 | INFO     | PID=11819 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-18 20:02:41] 2025-10-18 18:02:03,387 | INFO     | .. there are 9 such processes running
[2025-10-18 20:02:41] 2025-10-18 18:02:03,387 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 20:02:41] 2025-10-18 18:02:03,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 20:02:41] 2025-10-18 18:02:03,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 20:02:41] 2025-10-18 18:02:33,145 | INFO     | [monitor] cgroup control has ended
[2025-10-18 20:02:41] 2025-10-18 18:02:33,522 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652765280064)>', '<ExcThread(monitor, started 139652178626304)>']
[2025-10-18 20:02:41] 2025-10-18 18:02:33,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 20:02:41] 2025-10-18 18:02:33,563 | INFO     | [monitor] control thread has ended
[2025-10-18 20:02:41] 2025-10-18 18:02:38,548 | INFO     | all workflow threads have been joined
[2025-10-18 20:02:41] 2025-10-18 18:02:38,548 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 20:02:41] 2025-10-18 18:02:38,549 | INFO     | traces error code: 0
[2025-10-18 20:02:41] 2025-10-18 18:02:38,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 20:02:41] 2025-10-18 18:02:38,912 [wrapper] ==== pilot stdout END ====
[2025-10-18 20:02:41] 2025-10-18 18:02:39,027 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 20:02:41] 2025-10-18 18:02:39,111 [wrapper] pilotpid: 11819
[2025-10-18 20:02:41] 2025-10-18 18:02:39,198 [wrapper] Pilot exit status: 0
[2025-10-18 20:02:41] 2025-10-18 18:02:39,692 [wrapper] pandaids: 6848007241
[2025-10-18 20:02:41] 2025-10-18 18:02:40,622 [wrapper] cleanup supervisor_pilot 28161 11820
[2025-10-18 20:02:41] 2025-10-18 18:02:40,630 [wrapper] Test setup, not cleaning
[2025-10-18 20:02:41] 2025-10-18 18:02:40,634 [wrapper] apfmon messages muted
[2025-10-18 20:02:41] 2025-10-18 18:02:40,677 [wrapper] ==== wrapper stdout END ====
[2025-10-18 20:02:41] 2025-10-18 18:02:40,681 [wrapper] ==== wrapper stderr END ====
[2025-10-18 20:02:41]  *** Error codes and diagnostics ***
[2025-10-18 20:02:41]     "exeErrorCode": 0,
[2025-10-18 20:02:41]     "exeErrorDiag": "",
[2025-10-18 20:02:41]     "pilotErrorCode": 0,
[2025-10-18 20:02:41]     "pilotErrorDiag": "",
[2025-10-18 20:02:41]  *** Listing of results directory ***
[2025-10-18 20:02:41] total 432704
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc    557409 Oct 17 22:20 pilot3.tar.gz
[2025-10-18 20:02:41] -rwx------. 1 boinc boinc     36292 Oct 17 22:31 runpilot2-wrapper.sh
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc      5112 Oct 17 22:31 queuedata.json
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc       100 Oct 18 15:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 20:02:41] -rwxr-xr-x. 1 boinc boinc      7986 Oct 18 15:35 run_atlas
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc       105 Oct 18 15:35 job.xml
[2025-10-18 20:02:41] -rw-r--r--. 2 boinc boinc 228898796 Oct 18 15:35 EVNT.46771634._000947.pool.root.1
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc      6391 Oct 18 15:35 init_data.xml
[2025-10-18 20:02:41] -rw-r--r--. 2 boinc boinc     15120 Oct 18 15:35 start_atlas.sh
[2025-10-18 20:02:41] drwxrwx--x. 2 boinc boinc        68 Oct 18 15:35 shared
[2025-10-18 20:02:41] -rw-r--r--. 2 boinc boinc    569670 Oct 18 15:35 input.tar.gz
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc         0 Oct 18 15:35 boinc_lockfile
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc      2557 Oct 18 15:35 pandaJob.out
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc    976742 Oct 18 15:38 agis_schedconf.cvmfs.json
[2025-10-18 20:02:41] drwx------. 5 boinc boinc      4096 Oct 18 15:39 pilot3
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc 205143786 Oct 18 19:58 HITS.46771637._031211.pool.root.1
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc       531 Oct 18 19:58 boinc_task_state.xml
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc      1020 Oct 18 19:59 memory_monitor_summary.json
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc   1560740 Oct 18 19:59 agis_ddmendpoints.agis.ALL.json
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc    468434 Oct 18 20:00 log.46771637._031211.job.log.tgz.1
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc        95 Oct 18 20:01 pilot_heartbeat.json
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc      7781 Oct 18 20:01 heartbeat.json
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc      8192 Oct 18 20:02 boinc_mmap_file
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc        28 Oct 18 20:02 wrapper_checkpoint.txt
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc      5071 Oct 18 20:02 pilotlog.txt
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc   2108950 Oct 18 20:02 log.46771637._031211.job.log.1
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc       357 Oct 18 20:02 output.list
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc       620 Oct 18 20:02 runtime_log
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc   2600960 Oct 18 20:02 result.tar.gz
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc       656 Oct 18 20:02 ZY1KDm9H6T8n9Rq4apOajLDm4fhM0noT9bVof3QYDmUlaMDmAk39rn.diag
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc      8717 Oct 18 20:02 runtime_log.err
[2025-10-18 20:02:41] -rw-r--r--. 1 boinc boinc     20803 Oct 18 20:02 stderr.txt
[2025-10-18 20:02:41] HITS file was successfully produced:
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc 205143786 Oct 18 19:58 shared/HITS.pool.root.1
[2025-10-18 20:02:41]  *** Contents of shared directory: ***
[2025-10-18 20:02:41] total 426988
[2025-10-18 20:02:41] -rw-r--r--. 2 boinc boinc 228898796 Oct 18 15:35 ATLAS.root_0
[2025-10-18 20:02:41] -rw-r--r--. 2 boinc boinc     15120 Oct 18 15:35 start_atlas.sh
[2025-10-18 20:02:41] -rw-r--r--. 2 boinc boinc    569670 Oct 18 15:35 input.tar.gz
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc 205143786 Oct 18 19:58 HITS.pool.root.1
[2025-10-18 20:02:41] -rw-------. 1 boinc boinc   2600960 Oct 18 20:02 result.tar.gz
20:02:43 (8054): run_atlas exited; CPU time 57920.349136
20:02:43 (8054): called boinc_finish(0)

</stderr_txt>
]]>

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