Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:53:08 (1096066): wrapper (7.7.26015): starting
15:53:08 (1096066): wrapper: running run_atlas (--nthreads 4)
[2025-10-18 15:53:08] Arguments: --nthreads 4
[2025-10-18 15:53:08] Threads: 4
[2025-10-18 15:53:08] Checking for CVMFS
[2025-10-18 15:53:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 15:53:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 15:53:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 15:53:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 15:53:08] 2.9.2.0 4165322 3505 92184 151852 3 57 29736710 36864001 0 130560 0 2881683 99.991 124009 2733 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 15:53:08] CVMFS is ok
[2025-10-18 15:53:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 15:53:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 15:53:08] Further information can be found at the LHC@home message board.
[2025-10-18 15:53:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 15:53:08] Checking for apptainer binary...
[2025-10-18 15:53:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 15:53:08] Running /usr/bin/apptainer --version
[2025-10-18 15:53:08] apptainer version 1.4.1-1.1
[2025-10-18 15:53:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 15:53:08] thA309
[2025-10-18 15:53:08] apptainer works
[2025-10-18 15:53:08] Set ATHENA_PROC_NUMBER=4
[2025-10-18 15:53:08] Set ATHENA_CORE_NUMBER=4
[2025-10-18 15:53:08] Starting ATLAS job with PandaID=6848014903
[2025-10-18 15:53:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 17:14:29]  *** The last 200 lines of the pilot log: ***
[2025-10-18 17:14:29] 2025-10-18 15:13:36,089 | INFO     | update_server=False
[2025-10-18 17:14:29] 2025-10-18 15:13:36,089 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 17:14:29] 2025-10-18 15:13:36,089 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 17:14:29] 2025-10-18 15:13:36,210 | INFO     | all data control threads have been joined
[2025-10-18 17:14:29] 2025-10-18 15:13:36,260 | INFO     | all job control threads have been joined
[2025-10-18 17:14:29] 2025-10-18 15:13:36,421 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-18 17:14:29] 2025-10-18 15:13:36,421 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-18 17:14:29] 2025-10-18 15:13:36,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 17:14:29] 2025-10-18 15:13:36,421 | INFO     | will abort loop
[2025-10-18 17:14:29] 2025-10-18 15:13:37,094 | INFO     | [job] retrieve thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:37,095 | INFO     | [job] queue monitor thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:37,101 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:37,109 | INFO     | [payload] validate_post thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:37,216 | INFO     | [data] control thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:37,266 | INFO     | [job] control thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:37,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 17:14:29] 2025-10-18 15:13:37,427 | INFO     | [job] job monitor thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:37,498 | INFO     | all payload control threads have been joined
[2025-10-18 17:14:29] 2025-10-18 15:13:37,577 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:37,682 | INFO     | [data] copytool_in thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:38,066 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:38,176 | INFO     | [payload] failed_post thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:38,417 | INFO     | [job] validate thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:38,504 | INFO     | [payload] control thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:38,508 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:38,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 17:14:29] 2025-10-18 15:13:39,427 | INFO     | [data] copytool_out thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:13:42,552 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 17:14:29] 2025-10-18 15:14:06,292 | INFO     | PID=1099853 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 17:14:29] 2025-10-18 15:14:06,292 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 17:14:29] 2025-10-18 15:14:06,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 17:14:29] 2025-10-18 15:14:06,293 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 17:14:29] 2025-10-18 15:14:23,035 | INFO     | [monitor] cgroup control has ended
[2025-10-18 17:14:29] 2025-10-18 15:14:24,593 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898525517632)>', '<ExcThread(monitor, started 139897679636224)>']
[2025-10-18 17:14:29] 2025-10-18 15:14:25,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 17:14:29] 2025-10-18 15:14:25,394 | INFO     | [monitor] control thread has ended
[2025-10-18 17:14:29] 2025-10-18 15:14:29,619 | INFO     | all workflow threads have been joined
[2025-10-18 17:14:29] 2025-10-18 15:14:29,619 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 17:14:29] 2025-10-18 15:14:29,619 | INFO     | traces error code: 0
[2025-10-18 17:14:29] 2025-10-18 15:14:29,619 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 17:14:29] 2025-10-18 15:14:29,701 [wrapper] ==== pilot stdout END ====
[2025-10-18 17:14:29] 2025-10-18 15:14:29,705 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 17:14:29] 2025-10-18 15:14:29,709 [wrapper] pilotpid: 1099853
[2025-10-18 17:14:29] 2025-10-18 15:14:29,713 [wrapper] Pilot exit status: 0
[2025-10-18 17:14:29] 2025-10-18 15:14:29,725 [wrapper] pandaids: 6848014903
[2025-10-18 17:14:29] 2025-10-18 15:14:29,750 [wrapper] cleanup supervisor_pilot 1118863 1099854
[2025-10-18 17:14:29] 2025-10-18 15:14:29,754 [wrapper] Test setup, not cleaning
[2025-10-18 17:14:29] 2025-10-18 15:14:29,758 [wrapper] apfmon messages muted
[2025-10-18 17:14:29] 2025-10-18 15:14:29,762 [wrapper] ==== wrapper stdout END ====
[2025-10-18 17:14:29] 2025-10-18 15:14:29,767 [wrapper] ==== wrapper stderr END ====
[2025-10-18 17:14:29]  *** Error codes and diagnostics ***
[2025-10-18 17:14:29]     "exeErrorCode": 0,
[2025-10-18 17:14:29]     "exeErrorDiag": "",
[2025-10-18 17:14:29]     "pilotErrorCode": 0,
[2025-10-18 17:14:29]     "pilotErrorDiag": "",
[2025-10-18 17:14:29]  *** Listing of results directory ***
[2025-10-18 17:14:29] total 436376
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc    557409 Oct 18 00:20 pilot3.tar.gz
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc      5112 Oct 18 00:26 queuedata.json
[2025-10-18 17:14:29] -rwx------ 1 boinc boinc     36292 Oct 18 00:27 runpilot2-wrapper.sh
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc       100 Oct 18 15:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 17:14:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 15:53 run_atlas
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc       105 Oct 18 15:53 job.xml
[2025-10-18 17:14:29] -rw-r--r-- 2 boinc boinc 231032814 Oct 18 15:53 EVNT.46771634._001457.pool.root.1
[2025-10-18 17:14:29] -rw-r--r-- 2 boinc boinc    569673 Oct 18 15:53 input.tar.gz
[2025-10-18 17:14:29] -rw-r--r-- 2 boinc boinc     15120 Oct 18 15:53 start_atlas.sh
[2025-10-18 17:14:29] drwxrwx--x 2 boinc boinc      4096 Oct 18 15:53 shared
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc         0 Oct 18 15:53 boinc_setup_complete
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc      6377 Oct 18 15:53 init_data.xml
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc         0 Oct 18 15:53 boinc_lockfile
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc      2558 Oct 18 15:53 pandaJob.out
[2025-10-18 17:14:29] -rw------- 1 boinc boinc    976742 Oct 18 15:53 agis_schedconf.cvmfs.json
[2025-10-18 17:14:29] -rw------- 1 boinc boinc   1560740 Oct 18 15:53 agis_ddmendpoints.agis.ALL.json
[2025-10-18 17:14:29] drwx------ 5 boinc boinc      4096 Oct 18 15:53 pilot3
[2025-10-18 17:14:29] -rw------- 1 boinc boinc 209954319 Oct 18 17:13 HITS.46771637._033157.pool.root.1
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc       529 Oct 18 17:13 boinc_task_state.xml
[2025-10-18 17:14:29] -rw------- 1 boinc boinc      1022 Oct 18 17:13 memory_monitor_summary.json
[2025-10-18 17:14:29] -rw------- 1 boinc boinc    280223 Oct 18 17:13 log.46771637._033157.job.log.tgz.1
[2025-10-18 17:14:29] -rw------- 1 boinc boinc      7760 Oct 18 17:13 heartbeat.json
[2025-10-18 17:14:29] -rw------- 1 boinc boinc        95 Oct 18 17:14 pilot_heartbeat.json
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc      8192 Oct 18 17:14 boinc_mmap_file
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc        27 Oct 18 17:14 wrapper_checkpoint.txt
[2025-10-18 17:14:29] -rw------- 1 boinc boinc      4938 Oct 18 17:14 pilotlog.txt
[2025-10-18 17:14:29] -rw------- 1 boinc boinc    707753 Oct 18 17:14 log.46771637._033157.job.log.1
[2025-10-18 17:14:29] -rw------- 1 boinc boinc       357 Oct 18 17:14 output.list
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc       620 Oct 18 17:14 runtime_log
[2025-10-18 17:14:29] -rw------- 1 boinc boinc   1003520 Oct 18 17:14 result.tar.gz
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc      8777 Oct 18 17:14 runtime_log.err
[2025-10-18 17:14:29] -rw------- 1 boinc boinc       658 Oct 18 17:14 KljNDmz57T8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdBvNDmFGIesm.diag
[2025-10-18 17:14:29] -rw-r--r-- 1 boinc boinc      7645 Oct 18 17:14 stderr.txt
[2025-10-18 17:14:29] HITS file was successfully produced:
[2025-10-18 17:14:29] -rw------- 1 boinc boinc 209954319 Oct 18 17:13 shared/HITS.pool.root.1
[2025-10-18 17:14:29]  *** Contents of shared directory: ***
[2025-10-18 17:14:29] total 432220
[2025-10-18 17:14:29] -rw-r--r-- 2 boinc boinc 231032814 Oct 18 15:53 ATLAS.root_0
[2025-10-18 17:14:29] -rw-r--r-- 2 boinc boinc    569673 Oct 18 15:53 input.tar.gz
[2025-10-18 17:14:29] -rw-r--r-- 2 boinc boinc     15120 Oct 18 15:53 start_atlas.sh
[2025-10-18 17:14:29] -rw------- 1 boinc boinc 209954319 Oct 18 17:13 HITS.pool.root.1
[2025-10-18 17:14:29] -rw------- 1 boinc boinc   1003520 Oct 18 17:14 result.tar.gz
17:14:31 (1096066): run_atlas exited; CPU time 18140.107701
17:14:31 (1096066): called boinc_finish(0)

</stderr_txt>
]]>

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