Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-18 04:40:29 (1565218): vboxwrapper version 26210
2025-10-18 04:40:29 (1565218): BOINC client version: 8.2.5
2025-10-18 04:40:29 (1565218): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-18 04:40:29 (1565218): Successfully copied 'init_data.xml' to the shared directory.
2025-10-18 04:40:29 (1565218): Create VM. (boinc_db81c03e7a02c5a2, slot#1)
2025-10-18 04:40:30 (1565218): Setting Memory Size for VM. (4300MB)
2025-10-18 04:40:30 (1565218): Setting CPU Count for VM. (3)
2025-10-18 04:40:30 (1565218): Setting Chipset Options for VM.
2025-10-18 04:40:30 (1565218): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-18 04:40:30 (1565218): Setting Boot Options for VM.
2025-10-18 04:40:30 (1565218): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-18 04:40:30 (1565218): Enabling VM Network Access.
2025-10-18 04:40:30 (1565218): Disabling USB Support for VM.
2025-10-18 04:40:30 (1565218): Disabling COM Port Support for VM.
2025-10-18 04:40:30 (1565218): Disabling LPT Port Support for VM.
2025-10-18 04:40:30 (1565218): Disabling Audio Support for VM.
2025-10-18 04:40:30 (1565218): Disabling Clipboard Support for VM.
2025-10-18 04:40:30 (1565218): Disabling Drag and Drop Support for VM.
2025-10-18 04:40:30 (1565218): Adding storage controller(s) to VM.
2025-10-18 04:40:30 (1565218): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-18 04:40:31 (1565218): Adding VirtualBox Guest Additions to VM.
2025-10-18 04:40:31 (1565218): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-18 04:40:31 (1565218): forwarding host port 47495 to guest port 80
2025-10-18 04:40:31 (1565218): Enabling remote desktop for VM.
2025-10-18 04:40:31 (1565218): Required extension pack not installed, remote desktop not enabled.
2025-10-18 04:40:31 (1565218): Enabling shared directory for VM.
2025-10-18 04:40:31 (1565218): Starting VM using VBoxManage interface. (boinc_db81c03e7a02c5a2, slot#1)
2025-10-18 04:40:32 (1565218): Successfully started VM. (PID = '1565830')
2025-10-18 04:40:32 (1565218): Reporting VM Process ID to BOINC.
2025-10-18 04:40:32 (1565218): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-18 04:40:32 (1565218): Guest Log: CPUID EDX: 0x178bfbff
2025-10-18 04:40:32 (1565218): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-18 04:40:32 (1565218): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-18 04:40:32 (1565218): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-18 04:40:32 (1565218): Detected: Web Application Enabled (http://localhost:47495)
2025-10-18 04:40:32 (1565218): Preference change detected
2025-10-18 04:40:32 (1565218): Setting CPU throttle for VM. (100%)
2025-10-18 04:40:32 (1565218): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 30 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-18 04:40:34 (1565218): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-18 04:40:34 (1565218): Guest Log: BIOS: Booting from Hard Disk...
2025-10-18 04:40:37 (1565218): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-18 04:40:37 (1565218): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-18 04:40:37 (1565218): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-18 04:40:42 (1565218): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-18 04:40:42 (1565218): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-18 04:40:48 (1565218): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-18 04:40:48 (1565218): Guest Log: 00:00:00.000313 main     Log opened 2025-10-18T02:40:46.729901000Z
2025-10-18 04:40:48 (1565218): Guest Log: 00:00:00.000489 main     OS Product: Linux
2025-10-18 04:40:48 (1565218): Guest Log: 00:00:00.000537 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-18 04:40:48 (1565218): Guest Log: 00:00:00.000598 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-18 04:40:48 (1565218): Guest Log: 00:00:00.000652 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-18 04:40:48 (1565218): Guest Log: 00:00:00.000654 main     Process ID: 1290
2025-10-18 04:40:48 (1565218): Guest Log: 00:00:00.000655 main     Package type: LINUX_64BITS_GENERIC
2025-10-18 04:40:48 (1565218): Guest Log: 00:00:00.002260 main     5.2.32 r132073 started. Verbose level = 0
2025-10-18 04:40:48 (1565218): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-18 04:40:48 (1565218): Guest Log: [INFO] Mounting shared directory
2025-10-18 04:40:48 (1565218): Guest Log: [INFO] Checking for init_data.xml
2025-10-18 04:40:49 (1565218): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-18 04:40:49 (1565218): Guest Log: [INFO] Detected branch: prod
2025-10-18 04:40:50 (1565218): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-18 04:40:50 (1565218): Guest Log: Copying input files
2025-10-18 04:40:50 (1565218): Guest Log: Copied input files into RunAtlas.
2025-10-18 04:40:50 (1565218): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-18 04:40:50 (1565218): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-18 04:40:50 (1565218): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-18 04:40:50 (1565218): Guest Log: Further information can be found at the LHC@home message board.
2025-10-18 04:41:01 (1565218): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-18 04:41:01 (1565218): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-18 04:41:01 (1565218): Guest Log: 2.6.3.0 1565 0 32032 151836 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-18 04:41:03 (1565218): Guest Log: copied the webapp to /var/www
2025-10-18 04:41:03 (1565218): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-18 04:41:03 (1565218): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-18 04:41:03 (1565218): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-18 04:41:03 (1565218): Guest Log:  *** Starting ATLAS job. (PandaID=6848017728 taskID=46771637) ***
2025-10-18 06:19:32 (1565218): Status Report: Elapsed Time: '6000.000000'
2025-10-18 06:19:32 (1565218): Status Report: CPU Time: '17171.320000'
2025-10-18 07:18:53 (1565218): Guest Log:  *** Job finished ***
2025-10-18 07:18:53 (1565218): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:33,209 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:33,209 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:44,286 | INFO     | [monitor] cgroup control has ended
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:44,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140025099245376)>', '<ExcThread(monitor, started 140024473425664)>']
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:45,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:45,238 | INFO     | [monitor] control thread has ended
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,661 | INFO     | all workflow threads have been joined
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,662 | INFO     | end of generic workflow (traces error code: 0)
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,663 | INFO     | traces error code: 0
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,664 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,742 [wrapper] ==== pilot stdout END ====
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,751 [wrapper] ==== wrapper stdout RESUME ====
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,760 [wrapper] pilotpid: 5942
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,767 [wrapper] Pilot exit status: 0
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,813 [wrapper] pandaids: 6848017728
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,854 [wrapper] cleanup supervisor_pilot  7807 5943
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,868 [wrapper] Test setup, not cleaning
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,874 [wrapper] apfmon messages muted
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,881 [wrapper] ==== wrapper stdout END ====
2025-10-18 07:18:53 (1565218): Guest Log: 2025-10-18 05:18:49,888 [wrapper] ==== wrapper stderr END ====
2025-10-18 07:18:53 (1565218): Guest Log:  *** Error codes and diagnostics ***
2025-10-18 07:18:53 (1565218): Guest Log:     "exeErrorCode": 0,
2025-10-18 07:18:53 (1565218): Guest Log:     "exeErrorDiag": "",
2025-10-18 07:18:53 (1565218): Guest Log:     "pilotErrorCode": 0,
2025-10-18 07:18:53 (1565218): Guest Log:     "pilotErrorDiag": "",
2025-10-18 07:18:53 (1565218): Guest Log:  *** Listing of results directory ***
2025-10-18 07:18:53 (1565218): Guest Log: total 206132
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 18 00:19 pilot3.tar.gz
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 18 00:34 queuedata.json
2025-10-18 07:18:53 (1565218): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 18 00:36 runpilot2-wrapper.sh
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 atlas atlas    569674 Oct 18 02:40 input.tar.gz
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 18 02:40 start_atlas.sh
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 atlas atlas      8907 Oct 18 02:40 init_data.xml
2025-10-18 07:18:53 (1565218): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 18 02:40 EVNT.46771634._001547.pool.root.1 -> /data/./ATLAS.root_0
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Oct 18 02:41 pandaJob.out
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas    976749 Oct 18 02:41 agis_schedconf.cvmfs.json
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 18 02:41 agis_ddmendpoints.agis.ALL.json
2025-10-18 07:18:53 (1565218): Guest Log: drwx------. 5 atlas atlas      4096 Oct 18 02:41 pilot3
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas 204022490 Oct 18 05:17 HITS.46771637._034871.pool.root.1
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas      1024 Oct 18 05:17 memory_monitor_summary.json
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas    308802 Oct 18 05:17 log.46771637._034871.job.log.tgz.1
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas      7786 Oct 18 05:18 heartbeat.json
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas        95 Oct 18 05:18 pilot_heartbeat.json
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 18 05:18 pilotlog.txt
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas   1300665 Oct 18 05:18 log.46771637._034871.job.log.1
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas       357 Oct 18 05:18 output.list
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 18 05:18 runtime_log
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas   1628160 Oct 18 05:18 result.tar.gz
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 atlas atlas      8657 Oct 18 05:18 runtime_log.err
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas       659 Oct 18 05:18 fGPMDmK79T8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHXvNDmNAvxEn.diag
2025-10-18 07:18:53 (1565218): Guest Log: Looking for outputfile HITS.46771637._034871.pool.root.1
2025-10-18 07:18:53 (1565218): Guest Log: HITS file was successfully produced
2025-10-18 07:18:53 (1565218): Guest Log: -rw-------. 1 atlas atlas 204022490 Oct 18 05:17 /home/atlas/RunAtlas/HITS.46771637._034871.pool.root.1
2025-10-18 07:18:53 (1565218): Guest Log: Successfully finished the ATLAS job!
2025-10-18 07:18:53 (1565218): Guest Log: Copying the results back to the shared directory!
2025-10-18 07:18:53 (1565218): Guest Log:  *** Contents of shared directory: ***
2025-10-18 07:18:53 (1565218): Guest Log: total 227508
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 root root 230734157 Oct 18 02:40 ATLAS.root_0
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 root root      8907 Oct 18 02:40 init_data.xml
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 root root    569674 Oct 18 02:40 input.tar.gz
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 root root   1628160 Oct 18  2025 result.tar.gz
2025-10-18 07:18:53 (1565218): Guest Log: -rw-r--r--. 1 root root     15120 Oct 18 02:40 start_atlas.sh
2025-10-18 07:18:53 (1565218): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-18 07:18:53 (1565218): VM Completion File Detected.
2025-10-18 07:18:53 (1565218): Powering off VM.
2025-10-18 07:18:53 (1565218): Successfully stopped VM.
2025-10-18 07:18:53 (1565218): Deregistering VM. (boinc_db81c03e7a02c5a2, slot#1)
2025-10-18 07:18:53 (1565218): Removing network bandwidth throttle group from VM.
2025-10-18 07:18:53 (1565218): Removing VM from VirtualBox.
2025-10-18 07:18:58 (1565218): called boinc_finish(0)

</stderr_txt>
]]>

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