Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:22:32 (16044): wrapper (7.7.26015): starting
21:22:32 (16044): wrapper: running run_atlas (--nthreads 12)
[2025-10-17 21:22:32] Arguments: --nthreads 12
[2025-10-17 21:22:32] Threads: 12
[2025-10-17 21:22:32] Checking for CVMFS
[2025-10-17 21:22:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 21:22:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 21:22:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 21:22:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 21:22:32] 2.11.2.0 3035 230810 101256 151834 0 56 18573778 20275201 1 130560 3 113134339 99.984 13932494 12796 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-17 21:22:32] CVMFS is ok
[2025-10-17 21:22:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-17 21:22:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-17 21:22:32] Further information can be found at the LHC@home message board.
[2025-10-17 21:22:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 21:22:32] Checking for apptainer binary...
[2025-10-17 21:22:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 21:22:32] Running /usr/bin/apptainer --version
[2025-10-17 21:22:32] apptainer version 1.3.2-1.el7
[2025-10-17 21:22:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 21:22:33] c-205-31.aglt2.org
[2025-10-17 21:22:33] apptainer works
[2025-10-17 21:22:33] Set ATHENA_PROC_NUMBER=12
[2025-10-17 21:22:33] Set ATHENA_CORE_NUMBER=12
[2025-10-17 21:22:33] Starting ATLAS job with PandaID=6848001013
[2025-10-17 21:22:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-17 22:43:02]  *** The last 200 lines of the pilot log: ***
[2025-10-17 22:43:02]  protocol_id=None
[2025-10-17 22:43:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-17 22:43:02]  replicas=None
[2025-10-17 22:43:02]  scope=mc23_13p6TeV
[2025-10-17 22:43:02]  status=None
[2025-10-17 22:43:02]  status_code=0
[2025-10-17 22:43:02]  storage_token=
[2025-10-17 22:43:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6848001013/log.46771637._028699.job.log.tgz.1
[2025-10-17 22:43:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/24/log.46771637._028699.job.log.tgz.1
[2025-10-17 22:43:02]  workdir=None
[2025-10-17 22:43:02] ]
[2025-10-17 22:43:02] 2025-10-18 02:41:59,009 | INFO     | transferring file log.46771637._028699.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6848001013/log.46771637._028699.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-17 22:43:02] 2025-10-18 02:41:59,009 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6848001013/log.46771637._028699.job.log.tgz.1 /tmp/boinchome/slots/0/log.46771637._028699.job
[2025-10-17 22:43:02] 2025-10-18 02:41:59,031 | INFO     | adding to output.list: log.46771637._028699.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/24/log.46771637._028699.job.log.tg
[2025-10-17 22:43:02] 2025-10-18 02:41:59,032 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-17 22:43:02] 2025-10-18 02:41:59,033 | INFO     | summary of transferred files:
[2025-10-17 22:43:02] 2025-10-18 02:41:59,033 | INFO     |  -- lfn=log.46771637._028699.job.log.tgz.1, status_code=0, status=transferred
[2025-10-17 22:43:02] 2025-10-18 02:41:59,033 | INFO     | stage-out finished correctly
[2025-10-17 22:43:02] 2025-10-18 02:41:59,246 | INFO     | time since job start (4750s) is within the limit (172800.0s)
[2025-10-17 22:43:02] 2025-10-18 02:42:00,364 | INFO     | PID=19728 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-17 22:43:02] 2025-10-18 02:42:00,423 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-17 22:43:02] 2025-10-18 02:42:00,576 | INFO     | job 6848001013 has state=finished
[2025-10-17 22:43:02] 2025-10-18 02:42:00,576 | INFO     | preparing for final server update for job 6848001013 in state='finished'
[2025-10-17 22:43:02] 2025-10-18 02:42:00,577 | INFO     | this job has now completed (state=finished)
[2025-10-17 22:43:02] 2025-10-18 02:42:00,577 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-17 22:43:02] 2025-10-18 02:42:00,577 | INFO     | log transfer has been attempted: DONE
[2025-10-17 22:43:02] 2025-10-18 02:42:00,577 | INFO     | job 6848001013 has finished - writing final server update
[2025-10-17 22:43:02] 2025-10-18 02:42:00,578 | INFO     | total number of processed events: 400 (read)
[2025-10-17 22:43:02] 2025-10-18 02:42:00,579 | INFO     | executing command: lscpu
[2025-10-17 22:43:02] 2025-10-18 02:42:00,608 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-17 22:43:02] 2025-10-18 02:42:00,726 | INFO     | monitor loop #354: job 0:6848001013 is in state 'finished'
[2025-10-17 22:43:02] 2025-10-18 02:42:00,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 22:43:02] 2025-10-18 02:42:01,364 | INFO     | time since job start (4752s) is within the limit (172800.0s)
[2025-10-17 22:43:02] 2025-10-18 02:42:03,229 | INFO     | monitor loop #355: job 0:6848001013 is in state 'finished'
[2025-10-17 22:43:02] 2025-10-18 02:42:03,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 22:43:02] 2025-10-18 02:42:03,370 | INFO     | time since job start (4754s) is within the limit (172800.0s)
[2025-10-17 22:43:02] 2025-10-18 02:42:05,375 | INFO     | time since job start (4756s) is within the limit (172800.0s)
[2025-10-17 22:43:02] 2025-10-18 02:42:05,421 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-17 22:43:02] 2025-10-18 02:42:05,424 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-17 22:43:02] 2025-10-18 02:42:05,426 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6848001013/memory_monitor_summary.json (trf name=prmon)
[2025-10-17 22:43:02] 2025-10-18 02:42:05,427 | INFO     | extracted standard info from prmon json
[2025-10-17 22:43:02] 2025-10-18 02:42:05,427 | INFO     | extracted standard memory fields from prmon json
[2025-10-17 22:43:02] 2025-10-18 02:42:05,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-17 22:43:02] 2025-10-18 02:42:05,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-17 22:43:02] 2025-10-18 02:42:05,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-17 22:43:02] 2025-10-18 02:42:05,429 | INFO     | fitting pss+swap vs Time
[2025-10-17 22:43:02] 2025-10-18 02:42:05,429 | INFO     | sum of square deviations: 110960220.0
[2025-10-17 22:43:02] 2025-10-18 02:42:05,429 | INFO     | sum of deviations: -9974369494.0
[2025-10-17 22:43:02] 2025-10-18 02:42:05,430 | INFO     | mean x: 1760753038.0
[2025-10-17 22:43:02] 2025-10-18 02:42:05,430 | INFO     | mean y: 2841338.8732394367
[2025-10-17 22:43:02] 2025-10-18 02:42:05,430 | INFO     | -- intersect: 158279396564.65616
[2025-10-17 22:43:02] 2025-10-18 02:42:05,430 | INFO     | intersect: 158279396564.65616
[2025-10-17 22:43:02] 2025-10-18 02:42:05,430 | INFO     | chi2: 0.05851288262443747
[2025-10-17 22:43:02] 2025-10-18 02:42:05,430 | INFO     | -- intersect: 158279396564.65616
[2025-10-17 22:43:02] 2025-10-18 02:42:05,430 | INFO     | current memory leak: -89.89 B/s (using 71 data points, chi2=0.06)
[2025-10-17 22:43:02] 2025-10-18 02:42:05,431 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-10-17 22:43:02] 2025-10-18 02:42:05,431 | INFO     | ..............................
[2025-10-17 22:43:02] 2025-10-18 02:42:05,431 | INFO     | . Timing measurements:
[2025-10-17 22:43:02] 2025-10-18 02:42:05,431 | INFO     | . get job = 0 s
[2025-10-17 22:43:02] 2025-10-18 02:42:05,431 | INFO     | . initial setup = 2 s
[2025-10-17 22:43:02] 2025-10-18 02:42:05,431 | INFO     | . payload setup = 7 s
[2025-10-17 22:43:02] 2025-10-18 02:42:05,431 | INFO     | . stage-in = 0 s
[2025-10-17 22:43:02] 2025-10-18 02:42:05,431 | INFO     | . payload execution = 4720 s
[2025-10-17 22:43:02] 2025-10-18 02:42:05,432 | INFO     | . stage-out = 0 s
[2025-10-17 22:43:02] 2025-10-18 02:42:05,432 | INFO     | . log creation = 0 s
[2025-10-17 22:43:02] 2025-10-18 02:42:05,432 | INFO     | ..............................
[2025-10-17 22:43:02] 2025-10-18 02:42:05,876 | INFO     | 
[2025-10-17 22:43:02] 2025-10-18 02:42:05,877 | INFO     | job summary report
[2025-10-17 22:43:02] 2025-10-18 02:42:05,877 | INFO     | --------------------------------------------------
[2025-10-17 22:43:02] 2025-10-18 02:42:05,877 | INFO     | PanDA job id: 6848001013
[2025-10-17 22:43:02] 2025-10-18 02:42:05,877 | INFO     | task id: 46771637
[2025-10-17 22:43:02] 2025-10-18 02:42:05,877 | INFO     | errors: (none)
[2025-10-17 22:43:02] 2025-10-18 02:42:05,877 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-17 22:43:02] 2025-10-18 02:42:05,878 | INFO     | pilot state: finished 
[2025-10-17 22:43:02] 2025-10-18 02:42:05,878 | INFO     | transexitcode: 0
[2025-10-17 22:43:02] 2025-10-18 02:42:05,878 | INFO     | exeerrorcode: 0
[2025-10-17 22:43:02] 2025-10-18 02:42:05,878 | INFO     | exeerrordiag: 
[2025-10-17 22:43:02] 2025-10-18 02:42:05,878 | INFO     | exitcode: 0
[2025-10-17 22:43:02] 2025-10-18 02:42:05,878 | INFO     | exitmsg: OK
[2025-10-17 22:43:02] 2025-10-18 02:42:05,879 | INFO     | cpuconsumptiontime: 51364 s
[2025-10-17 22:43:02] 2025-10-18 02:42:05,879 | INFO     | nevents: 400
[2025-10-17 22:43:02] 2025-10-18 02:42:05,879 | INFO     | neventsw: 0
[2025-10-17 22:43:02] 2025-10-18 02:42:05,879 | INFO     | pid: 26134
[2025-10-17 22:43:02] 2025-10-18 02:42:05,879 | INFO     | pgrp: 26134
[2025-10-17 22:43:02] 2025-10-18 02:42:05,879 | INFO     | corecount: 12
[2025-10-17 22:43:02] 2025-10-18 02:42:05,879 | INFO     | event service: False
[2025-10-17 22:43:02] 2025-10-18 02:42:05,880 | INFO     | sizes: {0: 2348101, 1: 2348957, 6: 2349219, 12: 2349247, 4731: 2375440, 4733: 2384438, 4735: 2384622, 4740: 2384816}
[2025-10-17 22:43:02] 2025-10-18 02:42:05,880 | INFO     | --------------------------------------------------
[2025-10-17 22:43:02] 2025-10-18 02:42:05,880 | INFO     | 
[2025-10-17 22:43:02] 2025-10-18 02:42:05,880 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-17 22:43:02] 2025-10-18 02:42:05,906 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,907 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,907 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,907 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,907 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,908 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,908 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,908 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,908 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,908 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,910 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-17 22:43:02] 2025-10-18 02:42:05,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,910 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-17 22:43:02] 2025-10-18 02:42:05,910 | INFO     | job 6848001013 has completed (purged errors)
[2025-10-17 22:43:02] 2025-10-18 02:42:05,911 | INFO     | overall cleanup function is called
[2025-10-17 22:43:02] 2025-10-18 02:42:06,919 | INFO     | --- collectZombieJob: --- 10, [26134]
[2025-10-17 22:43:02] 2025-10-18 02:42:06,919 | INFO     | zombie collector waiting for pid 26134
[2025-10-17 22:43:02] 2025-10-18 02:42:06,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-17 22:43:02] 2025-10-18 02:42:06,920 | INFO     | collected zombie processes
[2025-10-17 22:43:02] 2025-10-18 02:42:06,920 | INFO     | will attempt to kill all subprocesses of pid=26134
[2025-10-17 22:43:02] 2025-10-18 02:42:07,008 | INFO     | process IDs to be killed: [26134] (in reverse order)
[2025-10-17 22:43:02] 2025-10-18 02:42:07,060 | WARNING  | found no corresponding commands to process id(s)
[2025-10-17 22:43:02] 2025-10-18 02:42:07,060 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-17 22:43:02] 2025-10-18 02:42:07,064 | INFO     | did not find any defunct processes belonging to 26134
[2025-10-17 22:43:02] 2025-10-18 02:42:07,066 | INFO     | did not find any defunct processes belonging to 26134
[2025-10-17 22:43:02] 2025-10-18 02:42:07,066 | INFO     | ready for new job
[2025-10-17 22:43:02] 2025-10-18 02:42:07,067 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-17 22:43:02] 2025-10-18 02:42:07,068 | INFO     | ***************************************
[2025-10-17 22:43:02] 2025-10-18 02:42:07,068 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-17 22:43:02] 2025-10-18 02:42:07,068 | INFO     | ***************************************
[2025-10-17 22:43:02] 2025-10-18 02:42:07,068 | INFO     | 
[2025-10-17 22:43:02] 2025-10-18 02:42:07,068 | INFO     | architecture information:
[2025-10-17 22:43:02] 2025-10-18 02:42:07,069 | INFO     | executing command: cat /etc/os-release
[2025-10-17 22:43:02] 2025-10-18 02:42:07,083 | INFO     | cat /etc/os-release:
[2025-10-17 22:43:02] NAME="CentOS Linux"
[2025-10-17 22:43:02] VERSION="7 (Core)"
[2025-10-17 22:43:02] ID="centos"
[2025-10-17 22:43:02] ID_LIKE="rhel fedora"
[2025-10-17 22:43:02] VERSION_ID="7"
[2025-10-17 22:43:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-17 22:43:02] ANSI_COLOR="0;31"
[2025-10-17 22:43:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-17 22:43:02] HOME_URL="https://www.centos.org/"
[2025-10-17 22:43:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-17 22:43:02] 
[2025-10-17 22:43:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-17 22:43:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-17 22:43:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-17 22:43:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-17 22:43:02] 
[2025-10-17 22:43:02] 2025-10-18 02:42:07,083 | INFO     | ***************************************
[2025-10-17 22:43:02] 2025-10-18 02:42:07,586 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-17 22:43:02] 2025-10-18 02:42:07,603 | INFO     | sufficient remaining disk space (29340205056 B)
[2025-10-17 22:43:02] 2025-10-18 02:42:07,603 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-17 22:43:02] 2025-10-18 02:42:07,603 | INFO     | current server update state: UPDATING_FINAL
[2025-10-17 22:43:02] 2025-10-18 02:42:07,604 | INFO     | update_server=False
[2025-10-17 22:43:02] 2025-10-18 02:42:07,604 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-17 22:43:02] 2025-10-18 02:42:07,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-17 22:43:02] 2025-10-18 02:42:07,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-17 22:43:02] 2025-10-18 02:42:07,605 | INFO     | aborting loop
[2025-10-17 22:43:02] 2025-10-18 02:42:07,647 | INFO     | all data control threads have been joined
[2025-10-17 22:43:02] 2025-10-18 02:42:07,719 | INFO     | all job control threads have been joined
[2025-10-17 22:43:02] 2025-10-18 02:42:08,608 | INFO     | [job] job monitor thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:08,609 | INFO     | [job] retrieve thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:08,653 | INFO     | [data] control thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:08,724 | INFO     | [job] control thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:08,745 | INFO     | all payload control threads have been joined
[2025-10-17 22:43:02] 2025-10-18 02:42:09,037 | INFO     | [payload] validate_post thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:09,182 | INFO     | [payload] failed_post thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:09,224 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:09,372 | INFO     | [data] copytool_in thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:09,610 | INFO     | [data] copytool_out thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:09,749 | INFO     | [payload] execute_payloads thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:09,750 | INFO     | [payload] control thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:09,915 | INFO     | [job] validate thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:09,940 | INFO     | [payload] validate_pre thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:10,067 | INFO     | [job] create_data_payload thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:10,525 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-17 22:43:02] 2025-10-18 02:42:11,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-17 22:43:02] 2025-10-18 02:42:11,530 | INFO     | [job] queue monitor thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:15,021 | INFO     | [data] queue_monitor thread has finished
[2025-10-17 22:43:02] 2025-10-18 02:42:38,578 | INFO     | PID=19728 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-17 22:43:02] 2025-10-18 02:42:38,579 | INFO     | found 0 job(s) in 20 queues
[2025-10-17 22:43:02] 2025-10-18 02:42:38,579 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-17 22:43:02] 2025-10-18 02:42:38,579 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-17 22:43:02] 2025-10-18 02:42:56,363 | INFO     | [monitor] cgroup control has ended
[2025-10-17 22:43:02] 2025-10-18 02:42:57,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140200040027968)>', '<ExcThread(monitor, started 140199459804928)>']
[2025-10-17 22:43:02] 2025-10-18 02:42:57,676 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-17 22:43:02] 2025-10-18 02:42:57,676 | INFO     | [monitor] control thread has ended
[2025-10-17 22:43:02] 2025-10-18 02:43:02,377 | INFO     | all workflow threads have been joined
[2025-10-17 22:43:02] 2025-10-18 02:43:02,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-17 22:43:02] 2025-10-18 02:43:02,378 | INFO     | traces error code: 0
[2025-10-17 22:43:02] 2025-10-18 02:43:02,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-17 22:43:02] 2025-10-18 02:43:02,472 [wrapper] ==== pilot stdout END ====
[2025-10-17 22:43:02] 2025-10-18 02:43:02,475 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-17 22:43:02] 2025-10-18 02:43:02,479 [wrapper] pilotpid: 19728
[2025-10-17 22:43:02] 2025-10-18 02:43:02,483 [wrapper] Pilot exit status: 0
[2025-10-17 22:43:02] 2025-10-18 02:43:02,498 [wrapper] pandaids: 6848001013
[2025-10-17 22:43:02] 2025-10-18 02:43:02,542 [wrapper] cleanup supervisor_pilot 19765 19729
[2025-10-17 22:43:02] 2025-10-18 02:43:02,546 [wrapper] Test setup, not cleaning
[2025-10-17 22:43:02] 2025-10-18 02:43:02,550 [wrapper] apfmon messages muted
[2025-10-17 22:43:02] 2025-10-18 02:43:02,554 [wrapper] ==== wrapper stdout END ====
[2025-10-17 22:43:02] 2025-10-18 02:43:02,558 [wrapper] ==== wrapper stderr END ====
[2025-10-17 22:43:02]  *** Error codes and diagnostics ***
[2025-10-17 22:43:02]     "exeErrorCode": 0,
[2025-10-17 22:43:02]     "exeErrorDiag": "",
[2025-10-17 22:43:02]     "pilotErrorCode": 0,
[2025-10-17 22:43:02]     "pilotErrorDiag": "",
[2025-10-17 22:43:02]  *** Listing of results directory ***
[2025-10-17 22:43:02] total 427728
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas    557409 Oct 17 11:38 pilot3.tar.gz
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas      5112 Oct 17 12:01 queuedata.json
[2025-10-17 22:43:02] -rwx------ 1 boincer umatlas     36292 Oct 17 12:01 runpilot2-wrapper.sh
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas       100 Oct 17 21:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-17 22:43:02] -rwxr-xr-x 1 boincer umatlas      7986 Oct 17 21:22 run_atlas
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas       105 Oct 17 21:22 job.xml
[2025-10-17 22:43:02] -rw-r--r-- 2 boincer umatlas 226893378 Oct 17 21:22 EVNT.46771634._001288.pool.root.1
[2025-10-17 22:43:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 17 21:22 start_atlas.sh
[2025-10-17 22:43:02] drwxrwx--x 2 boincer umatlas      4096 Oct 17 21:22 shared
[2025-10-17 22:43:02] -rw-r--r-- 2 boincer umatlas    569679 Oct 17 21:22 input.tar.gz
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas         0 Oct 17 21:22 boinc_lockfile
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas      2558 Oct 17 21:22 pandaJob.out
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas    976749 Oct 17 21:22 agis_schedconf.cvmfs.json
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas   1560740 Oct 17 21:22 agis_ddmendpoints.agis.ALL.json
[2025-10-17 22:43:02] drwx------ 5 boincer umatlas      4096 Oct 17 21:22 pilot3
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas      5953 Oct 17 22:37 init_data.xml
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas 205032099 Oct 17 22:41 HITS.46771637._028699.pool.root.1
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas       530 Oct 17 22:41 boinc_task_state.xml
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas        95 Oct 17 22:41 pilot_heartbeat.json
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas      1048 Oct 17 22:41 memory_monitor_summary.json
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas    396098 Oct 17 22:41 log.46771637._028699.job.log.tgz.1
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas      7858 Oct 17 22:42 heartbeat.json
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas      8192 Oct 17 22:42 boinc_mmap_file
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas        27 Oct 17 22:42 wrapper_checkpoint.txt
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas      4746 Oct 17 22:43 pilotlog.txt
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas    686406 Oct 17 22:43 log.46771637._028699.job.log.1
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas       357 Oct 17 22:43 output.list
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas       620 Oct 17 22:43 runtime_log
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas   1105920 Oct 17 22:43 result.tar.gz
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas      8705 Oct 17 22:43 runtime_log.err
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas       659 Oct 17 22:43 Ca4KDmp41T8n9Rq4apOajLDm4fhM0noT9bVof3QYDmoUaMDmpte1kn.diag
[2025-10-17 22:43:02] -rw-r--r-- 1 boincer umatlas     21894 Oct 17 22:43 stderr.txt
[2025-10-17 22:43:02] HITS file was successfully produced:
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas 205032099 Oct 17 22:41 shared/HITS.pool.root.1
[2025-10-17 22:43:02]  *** Contents of shared directory: ***
[2025-10-17 22:43:02] total 423464
[2025-10-17 22:43:02] -rw-r--r-- 2 boincer umatlas 226893378 Oct 17 21:22 ATLAS.root_0
[2025-10-17 22:43:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 17 21:22 start_atlas.sh
[2025-10-17 22:43:02] -rw-r--r-- 2 boincer umatlas    569679 Oct 17 21:22 input.tar.gz
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas 205032099 Oct 17 22:41 HITS.pool.root.1
[2025-10-17 22:43:02] -rw------- 1 boincer umatlas   1105920 Oct 17 22:43 result.tar.gz
22:43:04 (16044): run_atlas exited; CPU time 51341.081231
22:43:04 (16044): called boinc_finish(0)

</stderr_txt>
]]>

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