Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:52:57 (3515665): wrapper (7.7.26015): starting
12:52:57 (3515665): wrapper: running run_atlas (--nthreads 2)
[2025-10-18 12:52:57] Arguments: --nthreads 2
[2025-10-18 12:52:57] Threads: 2
[2025-10-18 12:52:57] Checking for CVMFS
[2025-10-18 12:52:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 12:52:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 12:52:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 12:52:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 12:52:58] 2.9.2.0 2746064 3522 61968 151848 2 57 28774812 36864000 0 130560 0 1998110 99.987 127487 2762 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 12:52:58] CVMFS is ok
[2025-10-18 12:52:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 12:52:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 12:52:58] Further information can be found at the LHC@home message board.
[2025-10-18 12:52:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 12:52:58] Checking for apptainer binary...
[2025-10-18 12:52:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 12:52:58] Running /usr/bin/apptainer --version
[2025-10-18 12:52:58] apptainer version 1.4.1-1.1
[2025-10-18 12:52:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 12:52:58] thA337
[2025-10-18 12:52:58] apptainer works
[2025-10-18 12:52:58] Set ATHENA_PROC_NUMBER=2
[2025-10-18 12:52:58] Set ATHENA_CORE_NUMBER=2
[2025-10-18 12:52:58] Starting ATLAS job with PandaID=6849452392
[2025-10-18 12:52:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 14:32:26]  *** The last 200 lines of the pilot log: ***
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 14:32:26] 2025-10-18 12:31:37,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,091 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 14:32:26] 2025-10-18 12:31:37,091 | INFO     | job 6849452392 has completed (purged errors)
[2025-10-18 14:32:26] 2025-10-18 12:31:37,091 | INFO     | overall cleanup function is called
[2025-10-18 14:32:26] 2025-10-18 12:31:38,097 | INFO     | --- collectZombieJob: --- 10, [3525788]
[2025-10-18 14:32:26] 2025-10-18 12:31:38,097 | INFO     | zombie collector waiting for pid 3525788
[2025-10-18 14:32:26] 2025-10-18 12:31:38,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 14:32:26] 2025-10-18 12:31:38,098 | INFO     | collected zombie processes
[2025-10-18 14:32:26] 2025-10-18 12:31:38,098 | INFO     | will attempt to kill all subprocesses of pid=3525788
[2025-10-18 14:32:26] 2025-10-18 12:31:38,130 | INFO     | process IDs to be killed: [3525788] (in reverse order)
[2025-10-18 14:32:26] 2025-10-18 12:31:38,151 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 14:32:26] 2025-10-18 12:31:38,151 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 14:32:26] 2025-10-18 12:31:38,152 | INFO     | did not find any defunct processes belonging to 3525788
[2025-10-18 14:32:26] 2025-10-18 12:31:38,153 | INFO     | did not find any defunct processes belonging to 3525788
[2025-10-18 14:32:26] 2025-10-18 12:31:38,153 | INFO     | ready for new job
[2025-10-18 14:32:26] 2025-10-18 12:31:38,153 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 14:32:26] 2025-10-18 12:31:38,153 | INFO     | ***************************************
[2025-10-18 14:32:26] 2025-10-18 12:31:38,153 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 14:32:26] 2025-10-18 12:31:38,153 | INFO     | ***************************************
[2025-10-18 14:32:26] 2025-10-18 12:31:38,153 | INFO     | 
[2025-10-18 14:32:26] 2025-10-18 12:31:38,154 | INFO     | architecture information:
[2025-10-18 14:32:26] 2025-10-18 12:31:38,154 | INFO     | executing command: cat /etc/os-release
[2025-10-18 14:32:26] 2025-10-18 12:31:38,161 | INFO     | cat /etc/os-release:
[2025-10-18 14:32:26] NAME="CentOS Linux"
[2025-10-18 14:32:26] VERSION="7 (Core)"
[2025-10-18 14:32:26] ID="centos"
[2025-10-18 14:32:26] ID_LIKE="rhel fedora"
[2025-10-18 14:32:26] VERSION_ID="7"
[2025-10-18 14:32:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 14:32:26] ANSI_COLOR="0;31"
[2025-10-18 14:32:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 14:32:26] HOME_URL="https://www.centos.org/"
[2025-10-18 14:32:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 14:32:26] 
[2025-10-18 14:32:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 14:32:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 14:32:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 14:32:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 14:32:26] 
[2025-10-18 14:32:26] 2025-10-18 12:31:38,161 | INFO     | ***************************************
[2025-10-18 14:32:26] 2025-10-18 12:31:38,665 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 14:32:26] 2025-10-18 12:31:38,694 | INFO     | sufficient remaining disk space (482390048768 B)
[2025-10-18 14:32:26] 2025-10-18 12:31:38,695 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 14:32:26] 2025-10-18 12:31:38,695 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 14:32:26] 2025-10-18 12:31:38,696 | INFO     | update_server=False
[2025-10-18 14:32:26] 2025-10-18 12:31:38,696 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 14:32:26] 2025-10-18 12:31:38,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 14:32:26] 2025-10-18 12:31:38,697 | INFO     | aborting loop
[2025-10-18 14:32:26] 2025-10-18 12:31:38,697 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 14:32:26] 2025-10-18 12:31:38,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 14:32:26] 2025-10-18 12:31:39,057 | INFO     | all payload control threads have been joined
[2025-10-18 14:32:26] 2025-10-18 12:31:39,258 | INFO     | all data control threads have been joined
[2025-10-18 14:32:26] 2025-10-18 12:31:39,617 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 14:32:26] 2025-10-18 12:31:39,679 | INFO     | all job control threads have been joined
[2025-10-18 14:32:26] 2025-10-18 12:31:39,702 | INFO     | [job] retrieve thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:39,703 | INFO     | [job] job monitor thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:39,703 | INFO     | [job] queue monitor thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:40,063 | INFO     | [payload] control thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:40,264 | INFO     | [data] control thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:40,404 | INFO     | [payload] validate_post thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:40,492 | INFO     | [job] validate thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:40,494 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:40,553 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:40,684 | INFO     | [job] control thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:40,973 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:41,124 | INFO     | [payload] failed_post thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:41,204 | INFO     | [data] copytool_in thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:41,622 | INFO     | [data] copytool_out thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:42,705 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:31:48,848 | INFO     | job.realtimelogging is not enabled
[2025-10-18 14:32:26] 2025-10-18 12:31:49,854 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 14:32:26] 2025-10-18 12:32:08,490 | INFO     | 5907s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-18 14:32:26] 2025-10-18 12:32:09,539 | INFO     | PID=3519365 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 14:32:26] 2025-10-18 12:32:09,539 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 14:32:26] 2025-10-18 12:32:09,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 14:32:26] 2025-10-18 12:32:09,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 14:32:26] 2025-10-18 12:32:19,234 | INFO     | [monitor] cgroup control has ended
[2025-10-18 14:32:26] 2025-10-18 12:32:21,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139730142873408)>', '<ExcThread(monitor, started 139729345427200)>']
[2025-10-18 14:32:26] 2025-10-18 12:32:21,600 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 14:32:26] 2025-10-18 12:32:21,601 | INFO     | [monitor] control thread has ended
[2025-10-18 14:32:26] 2025-10-18 12:32:26,343 | INFO     | all workflow threads have been joined
[2025-10-18 14:32:26] 2025-10-18 12:32:26,344 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 14:32:26] 2025-10-18 12:32:26,344 | INFO     | traces error code: 0
[2025-10-18 14:32:26] 2025-10-18 12:32:26,344 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 14:32:26] 2025-10-18 12:32:26,386 [wrapper] ==== pilot stdout END ====
[2025-10-18 14:32:26] 2025-10-18 12:32:26,388 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 14:32:26] 2025-10-18 12:32:26,390 [wrapper] pilotpid: 3519365
[2025-10-18 14:32:26] 2025-10-18 12:32:26,392 [wrapper] Pilot exit status: 0
[2025-10-18 14:32:26] 2025-10-18 12:32:26,397 [wrapper] pandaids: 6849452392
[2025-10-18 14:32:26] 2025-10-18 12:32:26,409 [wrapper] cleanup supervisor_pilot 3537813 3519366
[2025-10-18 14:32:26] 2025-10-18 12:32:26,411 [wrapper] Test setup, not cleaning
[2025-10-18 14:32:26] 2025-10-18 12:32:26,413 [wrapper] apfmon messages muted
[2025-10-18 14:32:26] 2025-10-18 12:32:26,415 [wrapper] ==== wrapper stdout END ====
[2025-10-18 14:32:26] 2025-10-18 12:32:26,417 [wrapper] ==== wrapper stderr END ====
[2025-10-18 14:32:26]  *** Error codes and diagnostics ***
[2025-10-18 14:32:26]     "exeErrorCode": 0,
[2025-10-18 14:32:26]     "exeErrorDiag": "",
[2025-10-18 14:32:26]     "pilotErrorCode": 0,
[2025-10-18 14:32:26]     "pilotErrorDiag": "",
[2025-10-18 14:32:26]  *** Listing of results directory ***
[2025-10-18 14:32:26] total 334296
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc    557409 Oct 18 00:46 pilot3.tar.gz
[2025-10-18 14:32:26] -rwx------ 1 boinc boinc     36292 Oct 18 00:46 runpilot2-wrapper.sh
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc      5112 Oct 18 00:46 queuedata.json
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc       100 Oct 18 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 14:32:26] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 12:52 run_atlas
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc       105 Oct 18 12:52 job.xml
[2025-10-18 14:32:26] -rw-r--r-- 2 boinc boinc 188375887 Oct 18 12:52 EVNT.46808900._000001.pool.root.1
[2025-10-18 14:32:26] -rw-r--r-- 2 boinc boinc    569660 Oct 18 12:52 input.tar.gz
[2025-10-18 14:32:26] -rw-r--r-- 2 boinc boinc     15120 Oct 18 12:52 start_atlas.sh
[2025-10-18 14:32:26] drwxrwx--x 2 boinc boinc      4096 Oct 18 12:52 shared
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc         0 Oct 18 12:52 boinc_setup_complete
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc      6205 Oct 18 12:52 init_data.xml
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc         0 Oct 18 12:52 boinc_lockfile
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc      2496 Oct 18 12:52 pandaJob.out
[2025-10-18 14:32:26] -rw------- 1 boinc boinc    976749 Oct 18 12:53 agis_schedconf.cvmfs.json
[2025-10-18 14:32:26] -rw------- 1 boinc boinc   1560740 Oct 18 12:53 agis_ddmendpoints.agis.ALL.json
[2025-10-18 14:32:26] drwx------ 5 boinc boinc      4096 Oct 18 12:53 pilot3
[2025-10-18 14:32:26] -rw------- 1 boinc boinc 147831202 Oct 18 14:31 HITS.46808902._000065.pool.root.1
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc       529 Oct 18 14:31 boinc_task_state.xml
[2025-10-18 14:32:26] -rw------- 1 boinc boinc      1016 Oct 18 14:31 memory_monitor_summary.json
[2025-10-18 14:32:26] -rw------- 1 boinc boinc    252835 Oct 18 14:31 log.46808902._000065.job.log.tgz.1
[2025-10-18 14:32:26] -rw------- 1 boinc boinc      7740 Oct 18 14:31 heartbeat.json
[2025-10-18 14:32:26] -rw------- 1 boinc boinc        95 Oct 18 14:31 pilot_heartbeat.json
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc      8192 Oct 18 14:31 boinc_mmap_file
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc        27 Oct 18 14:31 wrapper_checkpoint.txt
[2025-10-18 14:32:26] -rw------- 1 boinc boinc      4939 Oct 18 14:32 pilotlog.txt
[2025-10-18 14:32:26] -rw------- 1 boinc boinc    858746 Oct 18 14:32 log.46808902._000065.job.log.1
[2025-10-18 14:32:26] -rw------- 1 boinc boinc       357 Oct 18 14:32 output.list
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc       620 Oct 18 14:32 runtime_log
[2025-10-18 14:32:26] -rw------- 1 boinc boinc   1126400 Oct 18 14:32 result.tar.gz
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc      8777 Oct 18 14:32 runtime_log.err
[2025-10-18 14:32:26] -rw------- 1 boinc boinc       658 Oct 18 14:32 GfwLDmtO8T8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfDvNDms5vvnn.diag
[2025-10-18 14:32:26] -rw-r--r-- 1 boinc boinc     12580 Oct 18 14:32 stderr.txt
[2025-10-18 14:32:26] HITS file was successfully produced:
[2025-10-18 14:32:26] -rw------- 1 boinc boinc 147831202 Oct 18 14:31 shared/HITS.pool.root.1
[2025-10-18 14:32:26]  *** Contents of shared directory: ***
[2025-10-18 14:32:26] total 330012
[2025-10-18 14:32:26] -rw-r--r-- 2 boinc boinc 188375887 Oct 18 12:52 ATLAS.root_0
[2025-10-18 14:32:26] -rw-r--r-- 2 boinc boinc    569660 Oct 18 12:52 input.tar.gz
[2025-10-18 14:32:26] -rw-r--r-- 2 boinc boinc     15120 Oct 18 12:52 start_atlas.sh
[2025-10-18 14:32:26] -rw------- 1 boinc boinc 147831202 Oct 18 14:31 HITS.pool.root.1
[2025-10-18 14:32:26] -rw------- 1 boinc boinc   1126400 Oct 18 14:32 result.tar.gz
14:32:27 (3515665): run_atlas exited; CPU time 11405.723474
14:32:27 (3515665): called boinc_finish(0)

</stderr_txt>
]]>

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