Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
04:25:10 (11676): wrapper (7.7.26015): starting
04:25:10 (11676): wrapper: running run_atlas (--nthreads 8)
[2025-10-18 04:25:10] Arguments: --nthreads 8
[2025-10-18 04:25:10] Threads: 8
[2025-10-18 04:25:10] Checking for CVMFS
[2025-10-18 04:25:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 04:25:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 04:25:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 04:25:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 04:25:10] 2.11.0.0 4211 8717 58828 151836 3 188 3344146 4096000 3479 130560 0 1533400 99.557 933546 697 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-18 04:25:10] CVMFS is ok
[2025-10-18 04:25:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 04:25:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 04:25:10] Further information can be found at the LHC@home message board.
[2025-10-18 04:25:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 04:25:10] Checking for apptainer binary...
[2025-10-18 04:25:10] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-18 04:25:10] apptainer is not installed, using version from CVMFS
[2025-10-18 04:25:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 04:25:10] WARNING: Environment variable TMPDIR already has value [/tmp/job_10673965/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node216
[2025-10-18 04:25:10] apptainer works
[2025-10-18 04:25:10] Set ATHENA_PROC_NUMBER=8
[2025-10-18 04:25:10] Set ATHENA_CORE_NUMBER=8
[2025-10-18 04:25:10] Starting ATLAS job with PandaID=6847998146
[2025-10-18 04:25:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10673965/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 05:18:29]  *** The last 200 lines of the pilot log: ***
[2025-10-18 05:18:29]  protocol_id=None
[2025-10-18 05:18:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-18 05:18:29]  replicas=None
[2025-10-18 05:18:29]  scope=mc23_13p6TeV
[2025-10-18 05:18:29]  status=None
[2025-10-18 05:18:29]  status_code=0
[2025-10-18 05:18:29]  storage_token=
[2025-10-18 05:18:29]  surl=/tmp/job_10673965/atlas/pilot/slots/0/PanDA_Pilot-6847998146/log.46771637._027198.job.log.tgz.1
[2025-10-18 05:18:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/1f/log.46771637._027198.job.log.tgz.1
[2025-10-18 05:18:29]  workdir=None
[2025-10-18 05:18:29] ]
[2025-10-18 05:18:29] 2025-10-18 03:18:06,137 | INFO     | transferring file log.46771637._027198.job.log.tgz.1 from /tmp/job_10673965/atlas/pilot/slots/0/PanDA_Pilot-6847998146/log.46771637._027198.job.log.tgz.1 to /tmp/j
[2025-10-18 05:18:29] 2025-10-18 03:18:06,137 | INFO     | executing command: /usr/bin/env mv /tmp/job_10673965/atlas/pilot/slots/0/PanDA_Pilot-6847998146/log.46771637._027198.job.log.tgz.1 /tmp/job_10673965/atlas/pilot/sl
[2025-10-18 05:18:29] 2025-10-18 03:18:06,145 | INFO     | adding to output.list: log.46771637._027198.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/1f/log.46771637._027198.job.log.tg
[2025-10-18 05:18:29] 2025-10-18 03:18:06,145 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-18 05:18:29] 2025-10-18 03:18:06,146 | INFO     | summary of transferred files:
[2025-10-18 05:18:29] 2025-10-18 03:18:06,146 | INFO     |  -- lfn=log.46771637._027198.job.log.tgz.1, status_code=0, status=transferred
[2025-10-18 05:18:29] 2025-10-18 03:18:06,146 | INFO     | stage-out finished correctly
[2025-10-18 05:18:29] 2025-10-18 03:18:06,465 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-18 05:18:29] 2025-10-18 03:18:06,745 | INFO     | time since job start (3171s) is within the limit (172800.0s)
[2025-10-18 05:18:29] 2025-10-18 03:18:08,751 | INFO     | time since job start (3173s) is within the limit (172800.0s)
[2025-10-18 05:18:29] 2025-10-18 03:18:09,252 | INFO     | job 6847998146 has state=finished
[2025-10-18 05:18:29] 2025-10-18 03:18:09,252 | INFO     | preparing for final server update for job 6847998146 in state='finished'
[2025-10-18 05:18:29] 2025-10-18 03:18:09,253 | INFO     | this job has now completed (state=finished)
[2025-10-18 05:18:29] 2025-10-18 03:18:09,253 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-18 05:18:29] 2025-10-18 03:18:09,253 | INFO     | log transfer has been attempted: DONE
[2025-10-18 05:18:29] 2025-10-18 03:18:09,253 | INFO     | job 6847998146 has finished - writing final server update
[2025-10-18 05:18:29] 2025-10-18 03:18:09,253 | INFO     | total number of processed events: 400 (read)
[2025-10-18 05:18:29] 2025-10-18 03:18:09,253 | INFO     | executing command: lscpu
[2025-10-18 05:18:29] 2025-10-18 03:18:09,284 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-18 05:18:29] 2025-10-18 03:18:10,756 | INFO     | time since job start (3175s) is within the limit (172800.0s)
[2025-10-18 05:18:29] 2025-10-18 03:18:10,969 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-18 05:18:29] 2025-10-18 03:18:10,973 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2516.69475
[2025-10-18 05:18:29] 2025-10-18 03:18:10,979 | INFO     | using path: /tmp/job_10673965/atlas/pilot/slots/0/PanDA_Pilot-6847998146/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 05:18:29] 2025-10-18 03:18:10,979 | INFO     | extracted standard info from prmon json
[2025-10-18 05:18:29] 2025-10-18 03:18:10,979 | INFO     | extracted standard memory fields from prmon json
[2025-10-18 05:18:29] 2025-10-18 03:18:10,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 05:18:29] 2025-10-18 03:18:10,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 05:18:29] 2025-10-18 03:18:10,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 05:18:29] 2025-10-18 03:18:10,980 | INFO     | fitting pss+swap vs Time
[2025-10-18 05:18:29] 2025-10-18 03:18:10,980 | INFO     | sum of square deviations: 28242390.0
[2025-10-18 05:18:29] 2025-10-18 03:18:10,980 | INFO     | sum of deviations: -164912951.0
[2025-10-18 05:18:29] 2025-10-18 03:18:10,980 | INFO     | mean x: 1760755979.0
[2025-10-18 05:18:29] 2025-10-18 03:18:10,980 | INFO     | mean y: 2569515.3333333335
[2025-10-18 05:18:29] 2025-10-18 03:18:10,980 | INFO     | -- intersect: 10283975036.883883
[2025-10-18 05:18:29] 2025-10-18 03:18:10,980 | INFO     | intersect: 10283975036.883883
[2025-10-18 05:18:29] 2025-10-18 03:18:10,980 | INFO     | chi2: 0.002245149681227699
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | -- intersect: 10283975036.883883
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | current memory leak: -5.84 B/s (using 45 data points, chi2=0.00)
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | could have reported an average CPU frequency of 2666 MHz (5 samples)
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | ..............................
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | . Timing measurements:
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | . get job = 0 s
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | . initial setup = 1 s
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | . payload setup = 1 s
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | . stage-in = 0 s
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | . payload execution = 3152 s
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | . stage-out = 0 s
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | . log creation = 0 s
[2025-10-18 05:18:29] 2025-10-18 03:18:10,981 | INFO     | ..............................
[2025-10-18 05:18:29] 2025-10-18 03:18:11,031 | INFO     | 
[2025-10-18 05:18:29] 2025-10-18 03:18:11,031 | INFO     | job summary report
[2025-10-18 05:18:29] 2025-10-18 03:18:11,031 | INFO     | --------------------------------------------------
[2025-10-18 05:18:29] 2025-10-18 03:18:11,031 | INFO     | PanDA job id: 6847998146
[2025-10-18 05:18:29] 2025-10-18 03:18:11,031 | INFO     | task id: 46771637
[2025-10-18 05:18:29] 2025-10-18 03:18:11,031 | INFO     | errors: (none)
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | pilot state: finished 
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | transexitcode: 0
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | exeerrorcode: 0
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | exeerrordiag: 
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | exitcode: 0
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | exitmsg: OK
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | cpuconsumptiontime: 22848 s
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | nevents: 400
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | neventsw: 0
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | pid: 30116
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | pgrp: 30116
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | corecount: 8
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | event service: False
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | sizes: {0: 2349055, 2: 2349317, 10: 2349345, 3158: 2383954, 3159: 2383954, 3163: 2384180}
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | --------------------------------------------------
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | 
[2025-10-18 05:18:29] 2025-10-18 03:18:11,032 | INFO     | executing command: ls -lF /tmp/job_10673965/atlas/pilot/slots/0
[2025-10-18 05:18:29] 2025-10-18 03:18:11,041 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,041 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,041 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | job 6847998146 has completed (purged errors)
[2025-10-18 05:18:29] 2025-10-18 03:18:11,042 | INFO     | overall cleanup function is called
[2025-10-18 05:18:29] 2025-10-18 03:18:11,335 | WARNING  | process 30116 can no longer be monitored (due to stat problems) - aborting
[2025-10-18 05:18:29] 2025-10-18 03:18:11,411 | INFO     | using path: /tmp/job_10673965/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 05:18:29] 2025-10-18 03:18:11,501 | INFO     | number of running child processes to parent process 30116: 1
[2025-10-18 05:18:29] 2025-10-18 03:18:11,501 | INFO     | maximum number of monitored processes: 6
[2025-10-18 05:18:29] 2025-10-18 03:18:11,501 | INFO     | aborting job monitoring since job object (job id=6847998146) has expired
[2025-10-18 05:18:29] 2025-10-18 03:18:12,048 | INFO     | --- collectZombieJob: --- 10, [30116]
[2025-10-18 05:18:29] 2025-10-18 03:18:12,048 | INFO     | zombie collector waiting for pid 30116
[2025-10-18 05:18:29] 2025-10-18 03:18:12,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 05:18:29] 2025-10-18 03:18:12,048 | INFO     | collected zombie processes
[2025-10-18 05:18:29] 2025-10-18 03:18:12,049 | INFO     | will attempt to kill all subprocesses of pid=30116
[2025-10-18 05:18:29] 2025-10-18 03:18:12,139 | INFO     | process IDs to be killed: [30116] (in reverse order)
[2025-10-18 05:18:29] 2025-10-18 03:18:12,171 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 05:18:29] 2025-10-18 03:18:12,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 05:18:29] 2025-10-18 03:18:12,175 | INFO     | did not find any defunct processes belonging to 30116
[2025-10-18 05:18:29] 2025-10-18 03:18:12,178 | INFO     | did not find any defunct processes belonging to 30116
[2025-10-18 05:18:29] 2025-10-18 03:18:12,178 | INFO     | ready for new job
[2025-10-18 05:18:29] 2025-10-18 03:18:12,178 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 05:18:29] 2025-10-18 03:18:12,179 | INFO     | ***************************************
[2025-10-18 05:18:29] 2025-10-18 03:18:12,179 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 05:18:29] 2025-10-18 03:18:12,179 | INFO     | ***************************************
[2025-10-18 05:18:29] 2025-10-18 03:18:12,179 | INFO     | 
[2025-10-18 05:18:29] 2025-10-18 03:18:12,192 | INFO     | architecture information:
[2025-10-18 05:18:29] 2025-10-18 03:18:12,192 | INFO     | executing command: cat /etc/os-release
[2025-10-18 05:18:29] 2025-10-18 03:18:12,197 | INFO     | cat /etc/os-release:
[2025-10-18 05:18:29] NAME="CentOS Linux"
[2025-10-18 05:18:29] VERSION="7 (Core)"
[2025-10-18 05:18:29] ID="centos"
[2025-10-18 05:18:29] ID_LIKE="rhel fedora"
[2025-10-18 05:18:29] VERSION_ID="7"
[2025-10-18 05:18:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 05:18:29] ANSI_COLOR="0;31"
[2025-10-18 05:18:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 05:18:29] HOME_URL="https://www.centos.org/"
[2025-10-18 05:18:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 05:18:29] 
[2025-10-18 05:18:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 05:18:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 05:18:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 05:18:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 05:18:29] 
[2025-10-18 05:18:29] 2025-10-18 03:18:12,197 | INFO     | ***************************************
[2025-10-18 05:18:29] 2025-10-18 03:18:12,700 | INFO     | executing command: df -mP /tmp/job_10673965/atlas/pilot/slots/0
[2025-10-18 05:18:29] 2025-10-18 03:18:12,705 | INFO     | sufficient remaining disk space (226605662208 B)
[2025-10-18 05:18:29] 2025-10-18 03:18:12,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 05:18:29] 2025-10-18 03:18:12,705 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 05:18:29] 2025-10-18 03:18:12,705 | INFO     | update_server=False
[2025-10-18 05:18:29] 2025-10-18 03:18:12,705 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 05:18:29] 2025-10-18 03:18:12,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 05:18:29] 2025-10-18 03:18:12,705 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-18 05:18:29] 2025-10-18 03:18:12,705 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 05:18:29] 2025-10-18 03:18:12,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 05:18:29] 2025-10-18 03:18:12,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 05:18:29] 2025-10-18 03:18:12,706 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 05:18:29] 2025-10-18 03:18:12,706 | INFO     | aborting loop
[2025-10-18 05:18:29] 2025-10-18 03:18:12,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 05:18:29] 2025-10-18 03:18:12,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 05:18:29] 2025-10-18 03:18:12,861 | INFO     | all payload control threads have been joined
[2025-10-18 05:18:29] 2025-10-18 03:18:13,105 | INFO     | all data control threads have been joined
[2025-10-18 05:18:29] 2025-10-18 03:18:13,615 | INFO     | all job control threads have been joined
[2025-10-18 05:18:29] 2025-10-18 03:18:13,710 | INFO     | [job] retrieve thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:13,711 | INFO     | [job] queue monitor thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:13,711 | INFO     | [job] job monitor thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:13,841 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:13,866 | INFO     | [payload] control thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:13,932 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:14,001 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:14,091 | INFO     | [data] copytool_in thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:14,110 | INFO     | [data] control thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:14,551 | INFO     | [payload] validate_post thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:14,621 | INFO     | [job] control thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:14,711 | INFO     | [data] copytool_out thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:14,813 | INFO     | [payload] failed_post thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:15,142 | INFO     | [job] validate thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:16,711 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:20,055 | INFO     | [monitor] cgroup control has ended
[2025-10-18 05:18:29] 2025-10-18 03:18:23,388 | INFO     | job.realtimelogging is not enabled
[2025-10-18 05:18:29] 2025-10-18 03:18:24,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 05:18:29] 2025-10-18 03:18:24,461 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062568192)>']
[2025-10-18 05:18:29] 2025-10-18 03:18:24,765 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 05:18:29] 2025-10-18 03:18:24,765 | INFO     | [monitor] control thread has ended
[2025-10-18 05:18:29] 2025-10-18 03:18:29,486 | INFO     | all workflow threads have been joined
[2025-10-18 05:18:29] 2025-10-18 03:18:29,486 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 05:18:29] 2025-10-18 03:18:29,486 | INFO     | traces error code: 0
[2025-10-18 05:18:29] 2025-10-18 03:18:29,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 05:18:29] 2025-10-18 03:18:29,536 [wrapper] ==== pilot stdout END ====
[2025-10-18 05:18:29] 2025-10-18 03:18:29,538 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 05:18:29] 2025-10-18 03:18:29,539 [wrapper] pilotpid: 21889
[2025-10-18 05:18:29] 2025-10-18 03:18:29,540 [wrapper] Pilot exit status: 0
[2025-10-18 05:18:29] 2025-10-18 03:18:29,544 [wrapper] pandaids: 6847998146
[2025-10-18 05:18:29] 2025-10-18 03:18:29,566 [wrapper] cleanup supervisor_pilot 20617 21890
[2025-10-18 05:18:29] 2025-10-18 03:18:29,567 [wrapper] Test setup, not cleaning
[2025-10-18 05:18:29] 2025-10-18 03:18:29,568 [wrapper] apfmon messages muted
[2025-10-18 05:18:29] 2025-10-18 03:18:29,569 [wrapper] ==== wrapper stdout END ====
[2025-10-18 05:18:29] 2025-10-18 03:18:29,570 [wrapper] ==== wrapper stderr END ====
[2025-10-18 05:18:29]  *** Error codes and diagnostics ***
[2025-10-18 05:18:29]     "exeErrorCode": 0,
[2025-10-18 05:18:29]     "exeErrorDiag": "",
[2025-10-18 05:18:29]     "pilotErrorCode": 0,
[2025-10-18 05:18:29]     "pilotErrorDiag": "",
[2025-10-18 05:18:29]  *** Listing of results directory ***
[2025-10-18 05:18:29] total 432340
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user    557409 Oct 17 16:11 pilot3.tar.gz
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user      5112 Oct 17 16:17 queuedata.json
[2025-10-18 05:18:29] -rwx------ 1 mf493845 unix-user     36292 Oct 17 16:17 runpilot2-wrapper.sh
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user       100 Oct 18 03:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 05:18:29] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 18 03:26 run_atlas
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user       105 Oct 18 03:26 job.xml
[2025-10-18 05:18:29] -rw-r--r-- 2 mf493845 unix-user 229441367 Oct 18 04:25 EVNT.46771634._001226.pool.root.1
[2025-10-18 05:18:29] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 18 04:25 start_atlas.sh
[2025-10-18 05:18:29] drwxrwx--x 2 mf493845 unix-user       100 Oct 18 04:25 shared
[2025-10-18 05:18:29] -rw-r--r-- 2 mf493845 unix-user    569681 Oct 18 04:25 input.tar.gz
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user      6395 Oct 18 04:25 init_data.xml
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user         0 Oct 18 04:25 boinc_setup_complete
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user      8192 Oct 18 04:25 boinc_mmap_file
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user         0 Oct 18 04:25 boinc_lockfile
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user      2558 Oct 18 04:25 pandaJob.out
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user    976749 Oct 18 04:25 agis_schedconf.cvmfs.json
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user   1560740 Oct 18 04:25 agis_ddmendpoints.agis.ALL.json
[2025-10-18 05:18:29] drwx------ 5 mf493845 unix-user       440 Oct 18 04:25 pilot3
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user 207781234 Oct 18 05:17 HITS.46771637._027198.pool.root.1
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user        95 Oct 18 05:17 pilot_heartbeat.json
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user      1027 Oct 18 05:18 memory_monitor_summary.json
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user    310052 Oct 18 05:18 log.46771637._027198.job.log.tgz.1
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user      7764 Oct 18 05:18 heartbeat.json
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user      4638 Oct 18 05:18 pilotlog.txt
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user    498743 Oct 18 05:18 log.46771637._027198.job.log.1
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user       357 Oct 18 05:18 output.list
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user       620 Oct 18 05:18 runtime_log
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user    829440 Oct 18 05:18 result.tar.gz
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user      9076 Oct 18 05:18 runtime_log.err
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user       641 Oct 18 05:18 3nQKDmhR0T8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2utNDmNAXO8n.diag
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user     22154 Oct 18 05:18 stderr.txt
[2025-10-18 05:18:29] HITS file was successfully produced:
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user 207781234 Oct 18 05:17 shared/HITS.pool.root.1
[2025-10-18 05:18:29]  *** Contents of shared directory: ***
[2025-10-18 05:18:29] total 428364
[2025-10-18 05:18:29] -rw-r--r-- 2 mf493845 unix-user 229441367 Oct 18 04:25 ATLAS.root_0
[2025-10-18 05:18:29] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 18 04:25 start_atlas.sh
[2025-10-18 05:18:29] -rw-r--r-- 2 mf493845 unix-user    569681 Oct 18 04:25 input.tar.gz
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user 207781234 Oct 18 05:17 HITS.pool.root.1
[2025-10-18 05:18:29] -rw------- 1 mf493845 unix-user    829440 Oct 18 05:18 result.tar.gz
05:18:31 (11676): run_atlas exited; CPU time 22894.183812
05:18:31 (11676): called boinc_finish(0)

</stderr_txt>
]]>

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