Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:58:36 (1036987): wrapper (7.7.26015): starting
09:58:36 (1036987): wrapper: running run_atlas (--nthreads 3)
[2025-10-18 09:58:36] Arguments: --nthreads 3
[2025-10-18 09:58:36] Threads: 3
[2025-10-18 09:58:36] Checking for CVMFS
[2025-10-18 09:58:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 09:58:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 09:58:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 09:58:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 09:58:36] 2.9.2.0 114696 3201 82636 151843 2 57 31043858 36864001 0 130560 0 2391257 99.990 117111 2657 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 09:58:36] CVMFS is ok
[2025-10-18 09:58:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 09:58:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 09:58:36] Further information can be found at the LHC@home message board.
[2025-10-18 09:58:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 09:58:36] Checking for apptainer binary...
[2025-10-18 09:58:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 09:58:36] Running /usr/bin/apptainer --version
[2025-10-18 09:58:36] apptainer version 1.4.1-1.1
[2025-10-18 09:58:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 09:58:36] magicA246a
[2025-10-18 09:58:36] apptainer works
[2025-10-18 09:58:36] Set ATHENA_PROC_NUMBER=3
[2025-10-18 09:58:36] Set ATHENA_CORE_NUMBER=3
[2025-10-18 09:58:36] Starting ATLAS job with PandaID=6847339600
[2025-10-18 09:58:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 11:30:53]  *** The last 200 lines of the pilot log: ***
[2025-10-18 11:30:53] 2025-10-18 09:30:21,816 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 11:30:53] 2025-10-18 09:30:21,816 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 11:30:53] 2025-10-18 09:30:21,816 | INFO     | job 6847339600 has completed (purged errors)
[2025-10-18 11:30:53] 2025-10-18 09:30:21,816 | INFO     | overall cleanup function is called
[2025-10-18 11:30:53] 2025-10-18 09:30:22,819 | INFO     | --- collectZombieJob: --- 10, [1047127]
[2025-10-18 11:30:53] 2025-10-18 09:30:22,820 | INFO     | zombie collector waiting for pid 1047127
[2025-10-18 11:30:53] 2025-10-18 09:30:22,820 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 11:30:53] 2025-10-18 09:30:22,820 | INFO     | collected zombie processes
[2025-10-18 11:30:53] 2025-10-18 09:30:22,820 | INFO     | will attempt to kill all subprocesses of pid=1047127
[2025-10-18 11:30:53] 2025-10-18 09:30:22,862 | INFO     | process IDs to be killed: [1047127] (in reverse order)
[2025-10-18 11:30:53] 2025-10-18 09:30:22,886 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 11:30:53] 2025-10-18 09:30:22,886 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 11:30:53] 2025-10-18 09:30:22,888 | INFO     | did not find any defunct processes belonging to 1047127
[2025-10-18 11:30:53] 2025-10-18 09:30:22,889 | INFO     | did not find any defunct processes belonging to 1047127
[2025-10-18 11:30:53] 2025-10-18 09:30:22,889 | INFO     | ready for new job
[2025-10-18 11:30:53] 2025-10-18 09:30:22,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 11:30:53] 2025-10-18 09:30:22,890 | INFO     | ***************************************
[2025-10-18 11:30:53] 2025-10-18 09:30:22,890 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 11:30:53] 2025-10-18 09:30:22,890 | INFO     | ***************************************
[2025-10-18 11:30:53] 2025-10-18 09:30:22,890 | INFO     | 
[2025-10-18 11:30:53] 2025-10-18 09:30:22,890 | INFO     | architecture information:
[2025-10-18 11:30:53] 2025-10-18 09:30:22,890 | INFO     | executing command: cat /etc/os-release
[2025-10-18 11:30:53] 2025-10-18 09:30:22,899 | INFO     | cat /etc/os-release:
[2025-10-18 11:30:53] NAME="CentOS Linux"
[2025-10-18 11:30:53] VERSION="7 (Core)"
[2025-10-18 11:30:53] ID="centos"
[2025-10-18 11:30:53] ID_LIKE="rhel fedora"
[2025-10-18 11:30:53] VERSION_ID="7"
[2025-10-18 11:30:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 11:30:53] ANSI_COLOR="0;31"
[2025-10-18 11:30:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 11:30:53] HOME_URL="https://www.centos.org/"
[2025-10-18 11:30:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 11:30:53] 
[2025-10-18 11:30:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 11:30:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 11:30:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 11:30:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 11:30:53] 
[2025-10-18 11:30:53] 2025-10-18 09:30:22,899 | INFO     | ***************************************
[2025-10-18 11:30:53] 2025-10-18 09:30:23,402 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 11:30:53] 2025-10-18 09:30:23,415 | INFO     | sufficient remaining disk space (273220108288 B)
[2025-10-18 11:30:53] 2025-10-18 09:30:23,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | INFO     | update_server=False
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | INFO     | aborting loop
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 11:30:53] 2025-10-18 09:30:23,416 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 11:30:53] 2025-10-18 09:30:23,717 | INFO     | all data control threads have been joined
[2025-10-18 11:30:53] 2025-10-18 09:30:23,771 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 11:30:53] 2025-10-18 09:30:24,328 | INFO     | all job control threads have been joined
[2025-10-18 11:30:53] 2025-10-18 09:30:24,418 | INFO     | [job] queue monitor thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:24,420 | INFO     | [job] retrieve thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:24,422 | INFO     | [job] job monitor thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:24,536 | INFO     | [payload] failed_post thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:24,723 | INFO     | [data] control thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:24,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 11:30:53] 2025-10-18 09:30:24,921 | INFO     | all payload control threads have been joined
[2025-10-18 11:30:53] 2025-10-18 09:30:25,061 | INFO     | [payload] validate_post thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:25,242 | INFO     | [data] copytool_in thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:25,334 | INFO     | [job] control thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:25,770 | INFO     | [job] validate thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:25,820 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:25,835 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:25,865 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:25,927 | INFO     | [payload] control thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:26,906 | INFO     | [data] copytool_out thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:27,779 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:34,123 | INFO     | job.realtimelogging is not enabled
[2025-10-18 11:30:53] 2025-10-18 09:30:35,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 11:30:53] 2025-10-18 09:30:47,447 | INFO     | [monitor] cgroup control has ended
[2025-10-18 11:30:53] 2025-10-18 09:30:48,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140453195724608)>', '<ExcThread(monitor, started 140452854482688)>']
[2025-10-18 11:30:53] 2025-10-18 09:30:48,540 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 11:30:53] 2025-10-18 09:30:48,540 | INFO     | [monitor] control thread has ended
[2025-10-18 11:30:53] 2025-10-18 09:30:53,042 | INFO     | all workflow threads have been joined
[2025-10-18 11:30:53] 2025-10-18 09:30:53,043 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 11:30:53] 2025-10-18 09:30:53,043 | INFO     | traces error code: 0
[2025-10-18 11:30:53] 2025-10-18 09:30:53,043 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 11:30:53] 2025-10-18 09:30:53,096 [wrapper] ==== pilot stdout END ====
[2025-10-18 11:30:53] 2025-10-18 09:30:53,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 11:30:53] 2025-10-18 09:30:53,101 [wrapper] pilotpid: 1040698
[2025-10-18 11:30:53] 2025-10-18 09:30:53,103 [wrapper] Pilot exit status: 0
[2025-10-18 11:30:53] 2025-10-18 09:30:53,110 [wrapper] pandaids: 6847339600
[2025-10-18 11:30:53] 2025-10-18 09:30:53,127 [wrapper] cleanup supervisor_pilot 1059871 1040699
[2025-10-18 11:30:53] 2025-10-18 09:30:53,129 [wrapper] Test setup, not cleaning
[2025-10-18 11:30:53] 2025-10-18 09:30:53,131 [wrapper] apfmon messages muted
[2025-10-18 11:30:53] 2025-10-18 09:30:53,134 [wrapper] ==== wrapper stdout END ====
[2025-10-18 11:30:53] 2025-10-18 09:30:53,136 [wrapper] ==== wrapper stderr END ====
[2025-10-18 11:30:53]  *** Error codes and diagnostics ***
[2025-10-18 11:30:53]     "exeErrorCode": 0,
[2025-10-18 11:30:53]     "exeErrorDiag": "",
[2025-10-18 11:30:53]     "pilotErrorCode": 0,
[2025-10-18 11:30:53]     "pilotErrorDiag": "",
[2025-10-18 11:30:53]  *** Listing of results directory ***
[2025-10-18 11:30:53] total 434348
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc    557409 Oct 17 01:29 pilot3.tar.gz
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc      5112 Oct 17 01:52 queuedata.json
[2025-10-18 11:30:53] -rwx------ 1 boinc boinc     36292 Oct 17 01:54 runpilot2-wrapper.sh
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc       100 Oct 18 09:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 11:30:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 09:58 run_atlas
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc       105 Oct 18 09:58 job.xml
[2025-10-18 11:30:53] -rw-r--r-- 2 boinc boinc 228476611 Oct 18 09:58 EVNT.46771634._000834.pool.root.1
[2025-10-18 11:30:53] -rw-r--r-- 2 boinc boinc    569679 Oct 18 09:58 input.tar.gz
[2025-10-18 11:30:53] -rw-r--r-- 2 boinc boinc     15120 Oct 18 09:58 start_atlas.sh
[2025-10-18 11:30:53] drwxrwx--x 2 boinc boinc      4096 Oct 18 09:58 shared
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc         0 Oct 18 09:58 boinc_setup_complete
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc      6447 Oct 18 09:58 init_data.xml
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc         0 Oct 18 09:58 boinc_lockfile
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc      2556 Oct 18 09:58 pandaJob.out
[2025-10-18 11:30:53] -rw------- 1 boinc boinc    976741 Oct 18 09:58 agis_schedconf.cvmfs.json
[2025-10-18 11:30:53] -rw------- 1 boinc boinc   1560740 Oct 18 09:58 agis_ddmendpoints.agis.ALL.json
[2025-10-18 11:30:53] drwx------ 5 boinc boinc      4096 Oct 18 09:58 pilot3
[2025-10-18 11:30:53] -rw------- 1 boinc boinc 210292181 Oct 18 11:29 HITS.46771637._020118.pool.root.1
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc       529 Oct 18 11:30 boinc_task_state.xml
[2025-10-18 11:30:53] -rw------- 1 boinc boinc        95 Oct 18 11:30 pilot_heartbeat.json
[2025-10-18 11:30:53] -rw------- 1 boinc boinc      1018 Oct 18 11:30 memory_monitor_summary.json
[2025-10-18 11:30:53] -rw------- 1 boinc boinc    250740 Oct 18 11:30 log.46771637._020118.job.log.tgz.1
[2025-10-18 11:30:53] -rw------- 1 boinc boinc      7768 Oct 18 11:30 heartbeat.json
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc      8192 Oct 18 11:30 boinc_mmap_file
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc        27 Oct 18 11:30 wrapper_checkpoint.txt
[2025-10-18 11:30:53] -rw------- 1 boinc boinc      4628 Oct 18 11:30 pilotlog.txt
[2025-10-18 11:30:53] -rw------- 1 boinc boinc    802301 Oct 18 11:30 log.46771637._020118.job.log.1
[2025-10-18 11:30:53] -rw------- 1 boinc boinc       357 Oct 18 11:30 output.list
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc       620 Oct 18 11:30 runtime_log
[2025-10-18 11:30:53] -rw------- 1 boinc boinc   1075200 Oct 18 11:30 result.tar.gz
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc      8797 Oct 18 11:30 runtime_log.err
[2025-10-18 11:30:53] -rw------- 1 boinc boinc       663 Oct 18 11:30 mkpLDm9ymT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmc8rNDmG1mQun.diag
[2025-10-18 11:30:53] -rw-r--r-- 1 boinc boinc     11035 Oct 18 11:30 stderr.txt
[2025-10-18 11:30:53] HITS file was successfully produced:
[2025-10-18 11:30:53] -rw------- 1 boinc boinc 210292181 Oct 18 11:29 shared/HITS.pool.root.1
[2025-10-18 11:30:53]  *** Contents of shared directory: ***
[2025-10-18 11:30:53] total 430124
[2025-10-18 11:30:53] -rw-r--r-- 2 boinc boinc 228476611 Oct 18 09:58 ATLAS.root_0
[2025-10-18 11:30:53] -rw-r--r-- 2 boinc boinc    569679 Oct 18 09:58 input.tar.gz
[2025-10-18 11:30:53] -rw-r--r-- 2 boinc boinc     15120 Oct 18 09:58 start_atlas.sh
[2025-10-18 11:30:53] -rw------- 1 boinc boinc 210292181 Oct 18 11:29 HITS.pool.root.1
[2025-10-18 11:30:53] -rw------- 1 boinc boinc   1075200 Oct 18 11:30 result.tar.gz
11:30:54 (1036987): run_atlas exited; CPU time 15825.158122
11:30:54 (1036987): called boinc_finish(0)

</stderr_txt>
]]>

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