Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:02 (26863): wrapper (7.7.26015): starting
00:12:02 (26863): wrapper: running run_atlas (--nthreads 8)
[2025-10-18 00:12:02] Arguments: --nthreads 8
[2025-10-18 00:12:02] Threads: 8
[2025-10-18 00:12:02] Checking for CVMFS
[2025-10-18 00:12:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 00:12:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 00:12:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 00:12:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 00:12:03] 2.11.0.0 10154 8659 68452 151830 0 188 3378805 4096001 3814 130560 0 1375226 99.507 934972 681 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-18 00:12:03] CVMFS is ok
[2025-10-18 00:12:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 00:12:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 00:12:03] Further information can be found at the LHC@home message board.
[2025-10-18 00:12:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 00:12:03] Checking for apptainer binary...
[2025-10-18 00:12:03] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-18 00:12:03] apptainer is not installed, using version from CVMFS
[2025-10-18 00:12:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 00:12:04] WARNING: Environment variable TMPDIR already has value [/tmp/job_10672112/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node189
[2025-10-18 00:12:04] apptainer works
[2025-10-18 00:12:04] Set ATHENA_PROC_NUMBER=8
[2025-10-18 00:12:04] Set ATHENA_CORE_NUMBER=8
[2025-10-18 00:12:04] Starting ATLAS job with PandaID=6847357296
[2025-10-18 00:12:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10672112/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 01:04:32]  *** The last 200 lines of the pilot log: ***
[2025-10-18 01:04:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-18 01:04:32]  replicas=None
[2025-10-18 01:04:32]  scope=mc23_13p6TeV
[2025-10-18 01:04:32]  status=None
[2025-10-18 01:04:32]  status_code=0
[2025-10-18 01:04:32]  storage_token=
[2025-10-18 01:04:32]  surl=/tmp/job_10672112/atlas/pilot/slots/0/PanDA_Pilot-6847357296/log.46771637._024385.job.log.tgz.1
[2025-10-18 01:04:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/d0/log.46771637._024385.job.log.tgz.1
[2025-10-18 01:04:32]  workdir=None
[2025-10-18 01:04:32] ]
[2025-10-18 01:04:32] 2025-10-17 23:03:57,039 | INFO     | transferring file log.46771637._024385.job.log.tgz.1 from /tmp/job_10672112/atlas/pilot/slots/0/PanDA_Pilot-6847357296/log.46771637._024385.job.log.tgz.1 to /tmp/j
[2025-10-18 01:04:32] 2025-10-17 23:03:57,039 | INFO     | executing command: /usr/bin/env mv /tmp/job_10672112/atlas/pilot/slots/0/PanDA_Pilot-6847357296/log.46771637._024385.job.log.tgz.1 /tmp/job_10672112/atlas/pilot/sl
[2025-10-18 01:04:32] 2025-10-17 23:03:57,047 | INFO     | adding to output.list: log.46771637._024385.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/d0/log.46771637._024385.job.log.tg
[2025-10-18 01:04:32] 2025-10-17 23:03:57,048 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-18 01:04:32] 2025-10-17 23:03:57,048 | INFO     | summary of transferred files:
[2025-10-18 01:04:32] 2025-10-17 23:03:57,048 | INFO     |  -- lfn=log.46771637._024385.job.log.tgz.1, status_code=0, status=transferred
[2025-10-18 01:04:32] 2025-10-17 23:03:57,048 | INFO     | stage-out finished correctly
[2025-10-18 01:04:32] 2025-10-17 23:03:57,099 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-18 01:04:32] 2025-10-17 23:03:57,162 | INFO     | time since job start (3109s) is within the limit (172800.0s)
[2025-10-18 01:04:32] 2025-10-17 23:03:57,757 | WARNING  | process 13279 can no longer be monitored (due to stat problems) - aborting
[2025-10-18 01:04:32] 2025-10-17 23:03:57,757 | INFO     | using path: /tmp/job_10672112/atlas/pilot/slots/0/PanDA_Pilot-6847357296/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 01:04:32] 2025-10-17 23:03:57,850 | INFO     | number of running child processes to parent process 13279: 1
[2025-10-18 01:04:32] 2025-10-17 23:03:57,850 | INFO     | maximum number of monitored processes: 6
[2025-10-18 01:04:32] 2025-10-17 23:03:58,789 | INFO     | job 6847357296 has state=finished
[2025-10-18 01:04:32] 2025-10-17 23:03:58,789 | INFO     | preparing for final server update for job 6847357296 in state='finished'
[2025-10-18 01:04:32] 2025-10-17 23:03:58,789 | INFO     | this job has now completed (state=finished)
[2025-10-18 01:04:32] 2025-10-17 23:03:58,789 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-18 01:04:32] 2025-10-17 23:03:58,789 | INFO     | log transfer has been attempted: DONE
[2025-10-18 01:04:32] 2025-10-17 23:03:58,790 | INFO     | job 6847357296 has finished - writing final server update
[2025-10-18 01:04:32] 2025-10-17 23:03:58,790 | INFO     | total number of processed events: 400 (read)
[2025-10-18 01:04:32] 2025-10-17 23:03:58,790 | INFO     | executing command: lscpu
[2025-10-18 01:04:32] 2025-10-17 23:03:58,822 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-18 01:04:32] 2025-10-17 23:03:59,167 | INFO     | time since job start (3111s) is within the limit (172800.0s)
[2025-10-18 01:04:32] 2025-10-17 23:04:00,353 | INFO     | monitor loop #232: job 0:6847357296 is in state 'finished'
[2025-10-18 01:04:32] 2025-10-17 23:04:00,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 01:04:32] 2025-10-17 23:04:00,559 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-18 01:04:32] 2025-10-17 23:04:00,564 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2395.077921875
[2025-10-18 01:04:32] 2025-10-17 23:04:00,569 | INFO     | using path: /tmp/job_10672112/atlas/pilot/slots/0/PanDA_Pilot-6847357296/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 01:04:32] 2025-10-17 23:04:00,569 | INFO     | extracted standard info from prmon json
[2025-10-18 01:04:32] 2025-10-17 23:04:00,569 | INFO     | extracted standard memory fields from prmon json
[2025-10-18 01:04:32] 2025-10-17 23:04:00,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 01:04:32] 2025-10-17 23:04:00,569 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 01:04:32] 2025-10-17 23:04:00,569 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | fitting pss+swap vs Time
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | sum of square deviations: 26400495.0
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | sum of deviations: 399990511.5
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | mean x: 1760740762.5
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | mean y: 2509516.5681818184
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | -- intersect: -26674247802.234932
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | intersect: -26674247802.234932
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | chi2: 0.0003852020032002333
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | -- intersect: -26674247802.234932
[2025-10-18 01:04:32] 2025-10-17 23:04:00,570 | INFO     | current memory leak: 15.15 B/s (using 44 data points, chi2=0.00)
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | could have reported an average CPU frequency of 2646 MHz (5 samples)
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | ..............................
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | . Timing measurements:
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | . get job = 0 s
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | . initial setup = 1 s
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | . payload setup = 2 s
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | . stage-in = 0 s
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | . payload execution = 3088 s
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | . stage-out = 0 s
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | . log creation = 0 s
[2025-10-18 01:04:32] 2025-10-17 23:04:00,571 | INFO     | ..............................
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | 
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | job summary report
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | --------------------------------------------------
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | PanDA job id: 6847357296
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | task id: 46771637
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | errors: (none)
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | pilot state: finished 
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | transexitcode: 0
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | exeerrorcode: 0
[2025-10-18 01:04:32] 2025-10-17 23:04:00,619 | INFO     | exeerrordiag: 
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | exitcode: 0
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | exitmsg: OK
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | cpuconsumptiontime: 22535 s
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | nevents: 400
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | neventsw: 0
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | pid: 13279
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | pgrp: 13279
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | corecount: 8
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | event service: False
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | sizes: {0: 2349053, 2: 2349315, 11: 2349343, 3094: 2374891, 3095: 2383975, 3099: 2384145}
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | --------------------------------------------------
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | 
[2025-10-18 01:04:32] 2025-10-17 23:04:00,620 | INFO     | executing command: ls -lF /tmp/job_10672112/atlas/pilot/slots/0
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,629 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,630 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,630 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,630 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,630 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 01:04:32] 2025-10-17 23:04:00,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,630 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 01:04:32] 2025-10-17 23:04:00,630 | INFO     | job 6847357296 has completed (purged errors)
[2025-10-18 01:04:32] 2025-10-17 23:04:00,630 | INFO     | overall cleanup function is called
[2025-10-18 01:04:32] 2025-10-17 23:04:01,636 | INFO     | --- collectZombieJob: --- 10, [13279]
[2025-10-18 01:04:32] 2025-10-17 23:04:01,636 | INFO     | zombie collector waiting for pid 13279
[2025-10-18 01:04:32] 2025-10-17 23:04:01,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 01:04:32] 2025-10-17 23:04:01,636 | INFO     | collected zombie processes
[2025-10-18 01:04:32] 2025-10-17 23:04:01,636 | INFO     | will attempt to kill all subprocesses of pid=13279
[2025-10-18 01:04:32] 2025-10-17 23:04:01,734 | INFO     | process IDs to be killed: [13279] (in reverse order)
[2025-10-18 01:04:32] 2025-10-17 23:04:01,769 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 01:04:32] 2025-10-17 23:04:01,769 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 01:04:32] 2025-10-17 23:04:01,772 | INFO     | did not find any defunct processes belonging to 13279
[2025-10-18 01:04:32] 2025-10-17 23:04:01,775 | INFO     | did not find any defunct processes belonging to 13279
[2025-10-18 01:04:32] 2025-10-17 23:04:01,775 | INFO     | ready for new job
[2025-10-18 01:04:32] 2025-10-17 23:04:01,775 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 01:04:32] 2025-10-17 23:04:01,776 | INFO     | ***************************************
[2025-10-18 01:04:32] 2025-10-17 23:04:01,776 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 01:04:32] 2025-10-17 23:04:01,776 | INFO     | ***************************************
[2025-10-18 01:04:32] 2025-10-17 23:04:01,776 | INFO     | 
[2025-10-18 01:04:32] 2025-10-17 23:04:01,790 | INFO     | architecture information:
[2025-10-18 01:04:32] 2025-10-17 23:04:01,790 | INFO     | executing command: cat /etc/os-release
[2025-10-18 01:04:32] 2025-10-17 23:04:01,796 | INFO     | cat /etc/os-release:
[2025-10-18 01:04:32] NAME="CentOS Linux"
[2025-10-18 01:04:32] VERSION="7 (Core)"
[2025-10-18 01:04:32] ID="centos"
[2025-10-18 01:04:32] ID_LIKE="rhel fedora"
[2025-10-18 01:04:32] VERSION_ID="7"
[2025-10-18 01:04:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 01:04:32] ANSI_COLOR="0;31"
[2025-10-18 01:04:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 01:04:32] HOME_URL="https://www.centos.org/"
[2025-10-18 01:04:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 01:04:32] 
[2025-10-18 01:04:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 01:04:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 01:04:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 01:04:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 01:04:32] 
[2025-10-18 01:04:32] 2025-10-17 23:04:01,797 | INFO     | ***************************************
[2025-10-18 01:04:32] 2025-10-17 23:04:02,299 | INFO     | executing command: df -mP /tmp/job_10672112/atlas/pilot/slots/0
[2025-10-18 01:04:32] 2025-10-17 23:04:02,306 | INFO     | sufficient remaining disk space (224914309120 B)
[2025-10-18 01:04:32] 2025-10-17 23:04:02,307 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 01:04:32] 2025-10-17 23:04:02,307 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 01:04:32] 2025-10-17 23:04:02,307 | INFO     | update_server=False
[2025-10-18 01:04:32] 2025-10-17 23:04:02,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 01:04:32] 2025-10-17 23:04:02,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 01:04:32] 2025-10-17 23:04:02,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 01:04:32] 2025-10-17 23:04:02,307 | INFO     | aborting loop
[2025-10-18 01:04:32] 2025-10-17 23:04:02,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 01:04:32] 2025-10-17 23:04:02,762 | INFO     | all data control threads have been joined
[2025-10-18 01:04:32] 2025-10-17 23:04:02,997 | INFO     | all payload control threads have been joined
[2025-10-18 01:04:32] 2025-10-17 23:04:03,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 01:04:32] 2025-10-17 23:04:03,312 | INFO     | [job] retrieve thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:03,312 | INFO     | [job] job monitor thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:03,312 | INFO     | [job] queue monitor thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:03,484 | INFO     | [payload] validate_post thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:03,515 | INFO     | all job control threads have been joined
[2025-10-18 01:04:32] 2025-10-17 23:04:03,767 | INFO     | [data] control thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:04,002 | INFO     | [payload] control thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:04,030 | INFO     | [job] validate thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:04,058 | INFO     | [payload] failed_post thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:04,140 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:04,212 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:04,520 | INFO     | [job] control thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:04,539 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:04,611 | INFO     | [data] copytool_out thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:04,799 | INFO     | [data] copytool_in thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:07,155 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:12,428 | INFO     | job.realtimelogging is not enabled
[2025-10-18 01:04:32] 2025-10-17 23:04:13,433 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 01:04:32] 2025-10-17 23:04:13,500 | INFO     | [monitor] cgroup control has ended
[2025-10-18 01:04:32] 2025-10-17 23:04:15,226 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062568192)>']
[2025-10-18 01:04:32] 2025-10-17 23:04:20,251 | INFO     | all workflow threads have been joined
[2025-10-18 01:04:32] 2025-10-17 23:04:20,251 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 01:04:32] 2025-10-17 23:04:20,251 | INFO     | traces error code: 0
[2025-10-18 01:04:32] 2025-10-17 23:04:20,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 01:04:32] 2025-10-17 23:04:32,347 | INFO     | PID=31639 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-18 01:04:32] 2025-10-17 23:04:32,347 | INFO     | .. there are 3 such processes running
[2025-10-18 01:04:32] 2025-10-17 23:04:32,348 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 01:04:32] 2025-10-17 23:04:32,348 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 01:04:32] 2025-10-17 23:04:32,348 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 01:04:32] 2025-10-17 23:04:32,348 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 01:04:32] 2025-10-17 23:04:32,348 | INFO     | [monitor] control thread has ended
[2025-10-18 01:04:32] 2025-10-17 23:04:32,400 [wrapper] ==== pilot stdout END ====
[2025-10-18 01:04:32] 2025-10-17 23:04:32,401 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 01:04:32] 2025-10-17 23:04:32,403 [wrapper] pilotpid: 31639
[2025-10-18 01:04:32] 2025-10-17 23:04:32,404 [wrapper] Pilot exit status: 0
[2025-10-18 01:04:32] 2025-10-17 23:04:32,408 [wrapper] pandaids: 6847357296
[2025-10-18 01:04:32] 2025-10-17 23:04:32,429 [wrapper] cleanup supervisor_pilot  6806 31640
[2025-10-18 01:04:32] 2025-10-17 23:04:32,430 [wrapper] Test setup, not cleaning
[2025-10-18 01:04:32] 2025-10-17 23:04:32,431 [wrapper] apfmon messages muted
[2025-10-18 01:04:32] 2025-10-17 23:04:32,432 [wrapper] ==== wrapper stdout END ====
[2025-10-18 01:04:32] 2025-10-17 23:04:32,433 [wrapper] ==== wrapper stderr END ====
[2025-10-18 01:04:32]  *** Error codes and diagnostics ***
[2025-10-18 01:04:32]     "exeErrorCode": 0,
[2025-10-18 01:04:32]     "exeErrorDiag": "",
[2025-10-18 01:04:32]     "pilotErrorCode": 0,
[2025-10-18 01:04:32]     "pilotErrorDiag": "",
[2025-10-18 01:04:32]  *** Listing of results directory ***
[2025-10-18 01:04:32] total 434092
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user    557409 Oct 17 12:09 pilot3.tar.gz
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user      5112 Oct 17 12:31 queuedata.json
[2025-10-18 01:04:32] -rwx------ 1 mf493845 unix-user     36292 Oct 17 12:31 runpilot2-wrapper.sh
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user       100 Oct 17 23:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 01:04:32] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 17 23:13 run_atlas
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user       105 Oct 17 23:13 job.xml
[2025-10-18 01:04:32] -rw-r--r-- 2 mf493845 unix-user    569677 Oct 18 00:12 input.tar.gz
[2025-10-18 01:04:32] -rw-r--r-- 2 mf493845 unix-user 229505733 Oct 18 00:12 EVNT.46771634._000916.pool.root.1
[2025-10-18 01:04:32] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 18 00:12 start_atlas.sh
[2025-10-18 01:04:32] drwxrwx--x 2 mf493845 unix-user       100 Oct 18 00:12 shared
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user      6395 Oct 18 00:12 init_data.xml
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user         0 Oct 18 00:12 boinc_setup_complete
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user      8192 Oct 18 00:12 boinc_mmap_file
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user         0 Oct 18 00:12 boinc_lockfile
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user      2557 Oct 18 00:12 pandaJob.out
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user    976733 Oct 18 00:12 agis_schedconf.cvmfs.json
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user   1560740 Oct 18 00:12 agis_ddmendpoints.agis.ALL.json
[2025-10-18 01:04:32] drwx------ 5 mf493845 unix-user       440 Oct 18 00:12 pilot3
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user 209537712 Oct 18 01:03 HITS.46771637._024385.pool.root.1
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user        95 Oct 18 01:03 pilot_heartbeat.json
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user      1010 Oct 18 01:03 memory_monitor_summary.json
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user    306082 Oct 18 01:03 log.46771637._024385.job.log.tgz.1
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user      7756 Oct 18 01:04 heartbeat.json
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user       820 Oct 18 01:04 pilotlog.txt
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user    490913 Oct 18 01:04 log.46771637._024385.job.log.1
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user       357 Oct 18 01:04 output.list
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user       620 Oct 18 01:04 runtime_log
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user    819200 Oct 18 01:04 result.tar.gz
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user       640 Oct 18 01:04 vl5NDmhvwT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVPtNDmC4cJCn.diag
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user      9076 Oct 18 01:04 runtime_log.err
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user     22325 Oct 18 01:04 stderr.txt
[2025-10-18 01:04:32] HITS file was successfully produced:
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user 209537712 Oct 18 01:03 shared/HITS.pool.root.1
[2025-10-18 01:04:32]  *** Contents of shared directory: ***
[2025-10-18 01:04:32] total 430132
[2025-10-18 01:04:32] -rw-r--r-- 2 mf493845 unix-user    569677 Oct 18 00:12 input.tar.gz
[2025-10-18 01:04:32] -rw-r--r-- 2 mf493845 unix-user 229505733 Oct 18 00:12 ATLAS.root_0
[2025-10-18 01:04:32] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 18 00:12 start_atlas.sh
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user 209537712 Oct 18 01:03 HITS.pool.root.1
[2025-10-18 01:04:32] -rw------- 1 mf493845 unix-user    819200 Oct 18 01:04 result.tar.gz
01:04:33 (26863): run_atlas exited; CPU time 22584.573562
01:04:33 (26863): called boinc_finish(0)

</stderr_txt>
]]>

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