Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:59:30 (841369): wrapper (7.7.26015): starting
00:59:30 (841369): wrapper: running run_atlas (--nthreads 3)
[2025-10-18 00:59:30] Arguments: --nthreads 3
[2025-10-18 00:59:30] Threads: 3
[2025-10-18 00:59:30] Checking for CVMFS
[2025-10-18 00:59:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 00:59:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 00:59:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 00:59:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 00:59:31] 2.9.2.0 552616 16505 56412 151831 1 57 3787716 36864001 0 130560 0 586857 99.986 31260 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 00:59:31] CVMFS is ok
[2025-10-18 00:59:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 00:59:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 00:59:31] Further information can be found at the LHC@home message board.
[2025-10-18 00:59:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 00:59:31] Checking for apptainer binary...
[2025-10-18 00:59:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 00:59:31] Running /usr/bin/apptainer --version
[2025-10-18 00:59:31] apptainer version 1.4.1-1.1
[2025-10-18 00:59:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 00:59:31] cosA127a
[2025-10-18 00:59:31] apptainer works
[2025-10-18 00:59:31] Set ATHENA_PROC_NUMBER=3
[2025-10-18 00:59:31] Set ATHENA_CORE_NUMBER=3
[2025-10-18 00:59:31] Starting ATLAS job with PandaID=6847341156
[2025-10-18 00:59:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 02:29:06]  *** The last 200 lines of the pilot log: ***
[2025-10-18 02:29:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-18 02:29:06]  replicas=None
[2025-10-18 02:29:06]  scope=mc23_13p6TeV
[2025-10-18 02:29:06]  status=None
[2025-10-18 02:29:06]  status_code=0
[2025-10-18 02:29:06]  storage_token=
[2025-10-18 02:29:06]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6847341156/log.46771637._020826.job.log.tgz.1
[2025-10-18 02:29:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/24/log.46771637._020826.job.log.tgz.1
[2025-10-18 02:29:06]  workdir=None
[2025-10-18 02:29:06] ]
[2025-10-18 02:29:06] 2025-10-18 00:28:29,502 | INFO     | transferring file log.46771637._020826.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6847341156/log.46771637._020826.job.log.tgz.1 to /local/data/boinc/
[2025-10-18 02:29:06] 2025-10-18 00:28:29,503 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6847341156/log.46771637._020826.job.log.tgz.1 /local/data/boinc/slots/0/log.46771637._0208
[2025-10-18 02:29:06] 2025-10-18 00:28:29,514 | INFO     | adding to output.list: log.46771637._020826.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/24/log.46771637._020826.job.log.tg
[2025-10-18 02:29:06] 2025-10-18 00:28:29,515 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-18 02:29:06] 2025-10-18 00:28:29,515 | INFO     | summary of transferred files:
[2025-10-18 02:29:06] 2025-10-18 00:28:29,515 | INFO     |  -- lfn=log.46771637._020826.job.log.tgz.1, status_code=0, status=transferred
[2025-10-18 02:29:06] 2025-10-18 00:28:29,515 | INFO     | stage-out finished correctly
[2025-10-18 02:29:06] 2025-10-18 00:28:30,098 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-18 02:29:06] 2025-10-18 00:28:30,127 | INFO     | job 6847341156 has state=finished
[2025-10-18 02:29:06] 2025-10-18 00:28:30,127 | INFO     | preparing for final server update for job 6847341156 in state='finished'
[2025-10-18 02:29:06] 2025-10-18 00:28:30,127 | INFO     | this job has now completed (state=finished)
[2025-10-18 02:29:06] 2025-10-18 00:28:30,127 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-18 02:29:06] 2025-10-18 00:28:30,127 | INFO     | log transfer has been attempted: DONE
[2025-10-18 02:29:06] 2025-10-18 00:28:30,127 | INFO     | job 6847341156 has finished - writing final server update
[2025-10-18 02:29:06] 2025-10-18 00:28:30,127 | INFO     | total number of processed events: 400 (read)
[2025-10-18 02:29:06] 2025-10-18 00:28:30,128 | INFO     | executing command: lscpu
[2025-10-18 02:29:06] 2025-10-18 00:28:30,141 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-18 02:29:06] 2025-10-18 00:28:31,357 | INFO     | time since job start (5335s) is within the limit (172800.0s)
[2025-10-18 02:29:06] 2025-10-18 00:28:31,651 | WARNING  | process 851547 can no longer be monitored (due to stat problems) - aborting
[2025-10-18 02:29:06] 2025-10-18 00:28:31,651 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6847341156/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 02:29:06] 2025-10-18 00:28:31,706 | INFO     | number of running child processes to parent process 851547: 1
[2025-10-18 02:29:06] 2025-10-18 00:28:31,706 | INFO     | maximum number of monitored processes: 6
[2025-10-18 02:29:06] 2025-10-18 00:28:33,362 | INFO     | time since job start (5337s) is within the limit (172800.0s)
[2025-10-18 02:29:06] 2025-10-18 00:28:34,209 | INFO     | monitor loop #409: job 0:6847341156 is in state 'finished'
[2025-10-18 02:29:06] 2025-10-18 00:28:34,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 02:29:06] 2025-10-18 00:28:34,265 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-18 02:29:06] 2025-10-18 00:28:34,266 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4003.271666666666
[2025-10-18 02:29:06] 2025-10-18 00:28:34,267 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6847341156/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 02:29:06] 2025-10-18 00:28:34,267 | INFO     | extracted standard info from prmon json
[2025-10-18 02:29:06] 2025-10-18 00:28:34,267 | INFO     | extracted standard memory fields from prmon json
[2025-10-18 02:29:06] 2025-10-18 00:28:34,268 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 02:29:06] 2025-10-18 00:28:34,268 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 02:29:06] 2025-10-18 00:28:34,268 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 02:29:06] 2025-10-18 00:28:34,268 | INFO     | fitting pss+swap vs Time
[2025-10-18 02:29:06] 2025-10-18 00:28:34,268 | INFO     | sum of square deviations: 164765880.0
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | sum of deviations: -5848684270.0
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | mean x: 1760744741.0
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | mean y: 2396641.111111111
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | -- intersect: 62503444007.05802
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | intersect: 62503444007.05802
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | chi2: 0.11130854889345738
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | -- intersect: 62503444007.05802
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | current memory leak: -35.50 B/s (using 81 data points, chi2=0.11)
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | could have reported an average CPU frequency of 4134 MHz (6 samples)
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | ..............................
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | . Timing measurements:
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | . get job = 0 s
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | . initial setup = 1 s
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | . payload setup = 2 s
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | . stage-in = 0 s
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | . payload execution = 5313 s
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | . stage-out = 0 s
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | . log creation = 0 s
[2025-10-18 02:29:06] 2025-10-18 00:28:34,269 | INFO     | ..............................
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | 
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | job summary report
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | --------------------------------------------------
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | PanDA job id: 6847341156
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | task id: 46771637
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | errors: (none)
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | pilot state: finished 
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | transexitcode: 0
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | exeerrorcode: 0
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | exeerrordiag: 
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | exitcode: 0
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | exitmsg: OK
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | cpuconsumptiontime: 15318 s
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | nevents: 400
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | neventsw: 0
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | pid: 851547
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | pgrp: 851547
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | corecount: 3
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | event service: False
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | sizes: {0: 2348758, 1: 2348957, 3: 2349219, 11: 2349247, 5320: 2384849, 5321: 2384849, 5325: 2385171}
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | --------------------------------------------------
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | 
[2025-10-18 02:29:06] 2025-10-18 00:28:34,300 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-18 02:29:06] 2025-10-18 00:28:34,312 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | job 6847341156 has completed (purged errors)
[2025-10-18 02:29:06] 2025-10-18 00:28:34,313 | INFO     | overall cleanup function is called
[2025-10-18 02:29:06] 2025-10-18 00:28:35,319 | INFO     | --- collectZombieJob: --- 10, [851547]
[2025-10-18 02:29:06] 2025-10-18 00:28:35,320 | INFO     | zombie collector waiting for pid 851547
[2025-10-18 02:29:06] 2025-10-18 00:28:35,320 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 02:29:06] 2025-10-18 00:28:35,320 | INFO     | collected zombie processes
[2025-10-18 02:29:06] 2025-10-18 00:28:35,320 | INFO     | will attempt to kill all subprocesses of pid=851547
[2025-10-18 02:29:06] 2025-10-18 00:28:35,373 | INFO     | process IDs to be killed: [851547] (in reverse order)
[2025-10-18 02:29:06] 2025-10-18 00:28:35,400 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 02:29:06] 2025-10-18 00:28:35,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 02:29:06] 2025-10-18 00:28:35,402 | INFO     | did not find any defunct processes belonging to 851547
[2025-10-18 02:29:06] 2025-10-18 00:28:35,403 | INFO     | did not find any defunct processes belonging to 851547
[2025-10-18 02:29:06] 2025-10-18 00:28:35,403 | INFO     | ready for new job
[2025-10-18 02:29:06] 2025-10-18 00:28:35,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 02:29:06] 2025-10-18 00:28:35,404 | INFO     | ***************************************
[2025-10-18 02:29:06] 2025-10-18 00:28:35,404 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 02:29:06] 2025-10-18 00:28:35,404 | INFO     | ***************************************
[2025-10-18 02:29:06] 2025-10-18 00:28:35,404 | INFO     | 
[2025-10-18 02:29:06] 2025-10-18 00:28:35,404 | INFO     | architecture information:
[2025-10-18 02:29:06] 2025-10-18 00:28:35,404 | INFO     | executing command: cat /etc/os-release
[2025-10-18 02:29:06] 2025-10-18 00:28:35,413 | INFO     | cat /etc/os-release:
[2025-10-18 02:29:06] NAME="CentOS Linux"
[2025-10-18 02:29:06] VERSION="7 (Core)"
[2025-10-18 02:29:06] ID="centos"
[2025-10-18 02:29:06] ID_LIKE="rhel fedora"
[2025-10-18 02:29:06] VERSION_ID="7"
[2025-10-18 02:29:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 02:29:06] ANSI_COLOR="0;31"
[2025-10-18 02:29:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 02:29:06] HOME_URL="https://www.centos.org/"
[2025-10-18 02:29:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 02:29:06] 
[2025-10-18 02:29:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 02:29:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 02:29:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 02:29:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 02:29:06] 
[2025-10-18 02:29:06] 2025-10-18 00:28:35,413 | INFO     | ***************************************
[2025-10-18 02:29:06] 2025-10-18 00:28:35,915 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 02:29:06] 2025-10-18 00:28:35,924 | INFO     | sufficient remaining disk space (357118771200 B)
[2025-10-18 02:29:06] 2025-10-18 00:28:35,924 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 02:29:06] 2025-10-18 00:28:35,925 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 02:29:06] 2025-10-18 00:28:35,925 | INFO     | update_server=False
[2025-10-18 02:29:06] 2025-10-18 00:28:35,925 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 02:29:06] 2025-10-18 00:28:35,925 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 02:29:06] 2025-10-18 00:28:35,925 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 02:29:06] 2025-10-18 00:28:35,925 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 02:29:06] 2025-10-18 00:28:35,925 | INFO     | aborting loop
[2025-10-18 02:29:06] 2025-10-18 00:28:35,973 | INFO     | all job control threads have been joined
[2025-10-18 02:29:06] 2025-10-18 00:28:36,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 02:29:06] 2025-10-18 00:28:36,249 | INFO     | all data control threads have been joined
[2025-10-18 02:29:06] 2025-10-18 00:28:36,316 | INFO     | all payload control threads have been joined
[2025-10-18 02:29:06] 2025-10-18 00:28:36,926 | INFO     | [job] retrieve thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:36,930 | INFO     | [job] queue monitor thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:36,930 | INFO     | [job] job monitor thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:36,978 | INFO     | [job] control thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:37,210 | INFO     | [data] copytool_in thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:37,255 | INFO     | [data] control thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:37,321 | INFO     | [payload] control thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:37,729 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:37,817 | INFO     | [job] validate thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:37,869 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:37,893 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:37,930 | INFO     | [data] copytool_out thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:38,260 | INFO     | [payload] validate_post thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:38,456 | INFO     | [payload] failed_post thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:40,138 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:43,258 | INFO     | [monitor] cgroup control has ended
[2025-10-18 02:29:06] 2025-10-18 00:28:46,084 | INFO     | job.realtimelogging is not enabled
[2025-10-18 02:29:06] 2025-10-18 00:28:47,089 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 02:29:06] 2025-10-18 00:28:47,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140132964620096)>', '<ExcThread(monitor, started 140132476765952)>']
[2025-10-18 02:29:06] 2025-10-18 00:28:52,351 | INFO     | all workflow threads have been joined
[2025-10-18 02:29:06] 2025-10-18 00:28:52,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 02:29:06] 2025-10-18 00:28:52,351 | INFO     | traces error code: 0
[2025-10-18 02:29:06] 2025-10-18 00:28:52,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 02:29:06] 2025-10-18 00:29:06,500 | INFO     | PID=845091 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-18 02:29:06] 2025-10-18 00:29:06,501 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 02:29:06] 2025-10-18 00:29:06,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 02:29:06] 2025-10-18 00:29:06,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 02:29:06] 2025-10-18 00:29:06,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 02:29:06] 2025-10-18 00:29:06,501 | CRITICAL | thread 'MainThread' is not alive
[2025-10-18 02:29:06] 2025-10-18 00:29:06,501 | INFO     | [monitor] control thread has ended
[2025-10-18 02:29:06] 2025-10-18 00:29:06,548 [wrapper] ==== pilot stdout END ====
[2025-10-18 02:29:06] 2025-10-18 00:29:06,550 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 02:29:06] 2025-10-18 00:29:06,552 [wrapper] pilotpid: 845091
[2025-10-18 02:29:06] 2025-10-18 00:29:06,555 [wrapper] Pilot exit status: 0
[2025-10-18 02:29:06] 2025-10-18 00:29:06,562 [wrapper] pandaids: 6847341156
[2025-10-18 02:29:06] 2025-10-18 00:29:06,581 [wrapper] cleanup supervisor_pilot  871475 845092
[2025-10-18 02:29:06] 2025-10-18 00:29:06,583 [wrapper] Test setup, not cleaning
[2025-10-18 02:29:06] 2025-10-18 00:29:06,585 [wrapper] apfmon messages muted
[2025-10-18 02:29:06] 2025-10-18 00:29:06,588 [wrapper] ==== wrapper stdout END ====
[2025-10-18 02:29:06] 2025-10-18 00:29:06,590 [wrapper] ==== wrapper stderr END ====
[2025-10-18 02:29:06]  *** Error codes and diagnostics ***
[2025-10-18 02:29:06]     "exeErrorCode": 0,
[2025-10-18 02:29:06]     "exeErrorDiag": "",
[2025-10-18 02:29:06]     "pilotErrorCode": 0,
[2025-10-18 02:29:06]     "pilotErrorDiag": "",
[2025-10-18 02:29:06]  *** Listing of results directory ***
[2025-10-18 02:29:06] total 437448
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc    557409 Oct 17 02:34 pilot3.tar.gz
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc      5112 Oct 17 02:52 queuedata.json
[2025-10-18 02:29:06] -rwx------ 1 boinc boinc     36292 Oct 17 02:56 runpilot2-wrapper.sh
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc       100 Oct 18 00:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 02:29:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 00:59 run_atlas
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc       105 Oct 18 00:59 job.xml
[2025-10-18 02:29:06] -rw-r--r-- 2 boinc boinc 229648872 Oct 18 00:59 EVNT.46771634._000862.pool.root.1
[2025-10-18 02:29:06] drwxrwx--x 2 boinc boinc      4096 Oct 18 00:59 shared
[2025-10-18 02:29:06] -rw-r--r-- 2 boinc boinc    569675 Oct 18 00:59 input.tar.gz
[2025-10-18 02:29:06] -rw-r--r-- 2 boinc boinc     15120 Oct 18 00:59 start_atlas.sh
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc         0 Oct 18 00:59 boinc_setup_complete
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc      6439 Oct 18 00:59 init_data.xml
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc         0 Oct 18 00:59 boinc_lockfile
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc      2556 Oct 18 00:59 pandaJob.out
[2025-10-18 02:29:06] -rw------- 1 boinc boinc    976741 Oct 18 00:59 agis_schedconf.cvmfs.json
[2025-10-18 02:29:06] -rw------- 1 boinc boinc   1560740 Oct 18 00:59 agis_ddmendpoints.agis.ALL.json
[2025-10-18 02:29:06] drwx------ 5 boinc boinc      4096 Oct 18 00:59 pilot3
[2025-10-18 02:29:06] -rw------- 1 boinc boinc 212322903 Oct 18 02:28 HITS.46771637._020826.pool.root.1
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc       529 Oct 18 02:28 boinc_task_state.xml
[2025-10-18 02:29:06] -rw------- 1 boinc boinc      1022 Oct 18 02:28 memory_monitor_summary.json
[2025-10-18 02:29:06] -rw------- 1 boinc boinc    256513 Oct 18 02:28 log.46771637._020826.job.log.tgz.1
[2025-10-18 02:29:06] -rw------- 1 boinc boinc      7763 Oct 18 02:28 heartbeat.json
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc      8192 Oct 18 02:28 boinc_mmap_file
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc        27 Oct 18 02:28 wrapper_checkpoint.txt
[2025-10-18 02:29:06] -rw------- 1 boinc boinc       816 Oct 18 02:29 pilotlog.txt
[2025-10-18 02:29:06] -rw------- 1 boinc boinc        95 Oct 18 02:29 pilot_heartbeat.json
[2025-10-18 02:29:06] -rw------- 1 boinc boinc    778460 Oct 18 02:29 log.46771637._020826.job.log.1
[2025-10-18 02:29:06] -rw------- 1 boinc boinc       357 Oct 18 02:29 output.list
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc       620 Oct 18 02:29 runtime_log
[2025-10-18 02:29:06] -rw------- 1 boinc boinc   1054720 Oct 18 02:29 result.tar.gz
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc      8787 Oct 18 02:29 runtime_log.err
[2025-10-18 02:29:06] -rw------- 1 boinc boinc       660 Oct 18 02:29 YYeNDmlwnT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmUKZMDmxwUHYm.diag
[2025-10-18 02:29:06] -rw-r--r-- 1 boinc boinc     21813 Oct 18 02:29 stderr.txt
[2025-10-18 02:29:06] HITS file was successfully produced:
[2025-10-18 02:29:06] -rw------- 1 boinc boinc 212322903 Oct 18 02:28 shared/HITS.pool.root.1
[2025-10-18 02:29:06]  *** Contents of shared directory: ***
[2025-10-18 02:29:06] total 433232
[2025-10-18 02:29:06] -rw-r--r-- 2 boinc boinc 229648872 Oct 18 00:59 ATLAS.root_0
[2025-10-18 02:29:06] -rw-r--r-- 2 boinc boinc    569675 Oct 18 00:59 input.tar.gz
[2025-10-18 02:29:06] -rw-r--r-- 2 boinc boinc     15120 Oct 18 00:59 start_atlas.sh
[2025-10-18 02:29:06] -rw------- 1 boinc boinc 212322903 Oct 18 02:28 HITS.pool.root.1
[2025-10-18 02:29:06] -rw------- 1 boinc boinc   1054720 Oct 18 02:29 result.tar.gz
02:29:07 (841369): run_atlas exited; CPU time 15346.234258
02:29:07 (841369): called boinc_finish(0)

</stderr_txt>
]]>

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