Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:06:47 (3425890): wrapper (7.7.26015): starting
06:06:47 (3425890): wrapper: running run_atlas (--nthreads 2)
[2025-10-18 06:06:47] Arguments: --nthreads 2
[2025-10-18 06:06:47] Threads: 2
[2025-10-18 06:06:47] Checking for CVMFS
[2025-10-18 06:06:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 06:06:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 06:06:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 06:06:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 06:06:47] 2.9.2.0 2746064 3115 61376 151838 3 57 28725687 36864000 0 130560 0 1767568 99.987 114296 2735 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 06:06:47] CVMFS is ok
[2025-10-18 06:06:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 06:06:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 06:06:47] Further information can be found at the LHC@home message board.
[2025-10-18 06:06:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 06:06:47] Checking for apptainer binary...
[2025-10-18 06:06:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 06:06:47] Running /usr/bin/apptainer --version
[2025-10-18 06:06:47] apptainer version 1.4.1-1.1
[2025-10-18 06:06:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 06:06:47] thA337
[2025-10-18 06:06:47] apptainer works
[2025-10-18 06:06:48] Set ATHENA_PROC_NUMBER=2
[2025-10-18 06:06:48] Set ATHENA_CORE_NUMBER=2
[2025-10-18 06:06:48] Starting ATLAS job with PandaID=6847360175
[2025-10-18 06:06:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 08:18:27]  *** The last 200 lines of the pilot log: ***
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | job 6847360175 has completed (purged errors)
[2025-10-18 08:18:27] 2025-10-18 06:17:53,774 | INFO     | overall cleanup function is called
[2025-10-18 08:18:27] 2025-10-18 06:17:54,779 | INFO     | --- collectZombieJob: --- 10, [3436009]
[2025-10-18 08:18:27] 2025-10-18 06:17:54,780 | INFO     | zombie collector waiting for pid 3436009
[2025-10-18 08:18:27] 2025-10-18 06:17:54,780 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 08:18:27] 2025-10-18 06:17:54,780 | INFO     | collected zombie processes
[2025-10-18 08:18:27] 2025-10-18 06:17:54,780 | INFO     | will attempt to kill all subprocesses of pid=3436009
[2025-10-18 08:18:27] 2025-10-18 06:17:54,813 | INFO     | process IDs to be killed: [3436009] (in reverse order)
[2025-10-18 08:18:27] 2025-10-18 06:17:54,833 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 08:18:27] 2025-10-18 06:17:54,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 08:18:27] 2025-10-18 06:17:54,834 | INFO     | did not find any defunct processes belonging to 3436009
[2025-10-18 08:18:27] 2025-10-18 06:17:54,835 | INFO     | did not find any defunct processes belonging to 3436009
[2025-10-18 08:18:27] 2025-10-18 06:17:54,835 | INFO     | ready for new job
[2025-10-18 08:18:27] 2025-10-18 06:17:54,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 08:18:27] 2025-10-18 06:17:54,835 | INFO     | ***************************************
[2025-10-18 08:18:27] 2025-10-18 06:17:54,835 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 08:18:27] 2025-10-18 06:17:54,835 | INFO     | ***************************************
[2025-10-18 08:18:27] 2025-10-18 06:17:54,835 | INFO     | 
[2025-10-18 08:18:27] 2025-10-18 06:17:54,836 | INFO     | architecture information:
[2025-10-18 08:18:27] 2025-10-18 06:17:54,836 | INFO     | executing command: cat /etc/os-release
[2025-10-18 08:18:27] 2025-10-18 06:17:54,843 | INFO     | cat /etc/os-release:
[2025-10-18 08:18:27] NAME="CentOS Linux"
[2025-10-18 08:18:27] VERSION="7 (Core)"
[2025-10-18 08:18:27] ID="centos"
[2025-10-18 08:18:27] ID_LIKE="rhel fedora"
[2025-10-18 08:18:27] VERSION_ID="7"
[2025-10-18 08:18:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 08:18:27] ANSI_COLOR="0;31"
[2025-10-18 08:18:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 08:18:27] HOME_URL="https://www.centos.org/"
[2025-10-18 08:18:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 08:18:27] 
[2025-10-18 08:18:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 08:18:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 08:18:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 08:18:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 08:18:27] 
[2025-10-18 08:18:27] 2025-10-18 06:17:54,843 | INFO     | ***************************************
[2025-10-18 08:18:27] 2025-10-18 06:17:55,347 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 08:18:27] 2025-10-18 06:17:55,358 | INFO     | sufficient remaining disk space (482338668544 B)
[2025-10-18 08:18:27] 2025-10-18 06:17:55,358 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 08:18:27] 2025-10-18 06:17:55,358 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 08:18:27] 2025-10-18 06:17:55,358 | INFO     | update_server=False
[2025-10-18 08:18:27] 2025-10-18 06:17:55,358 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 08:18:27] 2025-10-18 06:17:55,358 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 08:18:27] 2025-10-18 06:17:55,358 | INFO     | aborting loop
[2025-10-18 08:18:27] 2025-10-18 06:17:55,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 08:18:27] 2025-10-18 06:17:55,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 08:18:27] 2025-10-18 06:17:55,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 08:18:27] 2025-10-18 06:17:55,787 | INFO     | all data control threads have been joined
[2025-10-18 08:18:27] 2025-10-18 06:17:56,124 | INFO     | all job control threads have been joined
[2025-10-18 08:18:27] 2025-10-18 06:17:56,364 | INFO     | [job] queue monitor thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:56,364 | INFO     | [job] retrieve thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:56,365 | INFO     | [job] job monitor thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:56,613 | INFO     | [payload] failed_post thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:56,792 | INFO     | [data] control thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:56,793 | INFO     | all payload control threads have been joined
[2025-10-18 08:18:27] 2025-10-18 06:17:57,039 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:57,122 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:57,130 | INFO     | [job] control thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:57,174 | INFO     | [payload] validate_post thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:57,280 | INFO     | [data] copytool_in thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:57,284 | INFO     | [job] validate thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:57,311 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:57,365 | INFO     | [data] copytool_out thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:57,799 | INFO     | [payload] control thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:57,848 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:17:59,366 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 08:18:27] 2025-10-18 06:18:13,900 | INFO     | [monitor] cgroup control has ended
[2025-10-18 08:18:27] 2025-10-18 06:18:15,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634193209152)>', '<ExcThread(monitor, started 139633480431360)>']
[2025-10-18 08:18:27] 2025-10-18 06:18:20,715 | INFO     | all workflow threads have been joined
[2025-10-18 08:18:27] 2025-10-18 06:18:20,720 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 08:18:27] 2025-10-18 06:18:20,721 | INFO     | traces error code: 0
[2025-10-18 08:18:27] 2025-10-18 06:18:20,721 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 08:18:27] 2025-10-18 06:18:26,392 | INFO     | PID=3429593 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 08:18:27] 2025-10-18 06:18:26,393 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 08:18:27] 2025-10-18 06:18:26,393 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 08:18:27] 2025-10-18 06:18:26,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 08:18:27] 2025-10-18 06:18:26,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 08:18:27] 2025-10-18 06:18:26,393 | INFO     | [monitor] control thread has ended
[2025-10-18 08:18:27] 2025-10-18 06:18:26,432 [wrapper] ==== pilot stdout END ====
[2025-10-18 08:18:27] 2025-10-18 06:18:26,435 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 08:18:27] 2025-10-18 06:18:26,437 [wrapper] pilotpid: 3429593
[2025-10-18 08:18:27] 2025-10-18 06:18:26,439 [wrapper] Pilot exit status: 0
[2025-10-18 08:18:27] 2025-10-18 06:18:26,444 [wrapper] pandaids: 6847360175
[2025-10-18 08:18:27] 2025-10-18 06:18:26,455 [wrapper] cleanup supervisor_pilot 3450759 3429594
[2025-10-18 08:18:27] 2025-10-18 06:18:26,457 [wrapper] Test setup, not cleaning
[2025-10-18 08:18:27] 2025-10-18 06:18:26,459 [wrapper] apfmon messages muted
[2025-10-18 08:18:27] 2025-10-18 06:18:26,461 [wrapper] ==== wrapper stdout END ====
[2025-10-18 08:18:27] 2025-10-18 06:18:26,463 [wrapper] ==== wrapper stderr END ====
[2025-10-18 08:18:27]  *** Error codes and diagnostics ***
[2025-10-18 08:18:27]     "exeErrorCode": 0,
[2025-10-18 08:18:27]     "exeErrorDiag": "",
[2025-10-18 08:18:27]     "pilotErrorCode": 0,
[2025-10-18 08:18:27]     "pilotErrorDiag": "",
[2025-10-18 08:18:27]  *** Listing of results directory ***
[2025-10-18 08:18:27] total 424620
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc    557409 Oct 17 14:15 pilot3.tar.gz
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc      5112 Oct 17 14:42 queuedata.json
[2025-10-18 08:18:27] -rwx------ 1 boinc boinc     36292 Oct 17 14:43 runpilot2-wrapper.sh
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc       100 Oct 18 06:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 08:18:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 06:06 run_atlas
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc       105 Oct 18 06:06 job.xml
[2025-10-18 08:18:27] -rw-r--r-- 2 boinc boinc 228689914 Oct 18 06:06 EVNT.46771634._001190.pool.root.1
[2025-10-18 08:18:27] -rw-r--r-- 2 boinc boinc    569677 Oct 18 06:06 input.tar.gz
[2025-10-18 08:18:27] -rw-r--r-- 2 boinc boinc     15120 Oct 18 06:06 start_atlas.sh
[2025-10-18 08:18:27] drwxrwx--x 2 boinc boinc      4096 Oct 18 06:06 shared
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc         0 Oct 18 06:06 boinc_setup_complete
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc      6205 Oct 18 06:06 init_data.xml
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc         0 Oct 18 06:06 boinc_lockfile
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc      2558 Oct 18 06:06 pandaJob.out
[2025-10-18 08:18:27] -rw------- 1 boinc boinc    976741 Oct 18 06:07 agis_schedconf.cvmfs.json
[2025-10-18 08:18:27] -rw------- 1 boinc boinc   1560740 Oct 18 06:07 agis_ddmendpoints.agis.ALL.json
[2025-10-18 08:18:27] drwx------ 5 boinc boinc      4096 Oct 18 06:07 pilot3
[2025-10-18 08:18:27] -rw------- 1 boinc boinc 199429628 Oct 18 08:17 HITS.46771637._026002.pool.root.1
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc       529 Oct 18 08:17 boinc_task_state.xml
[2025-10-18 08:18:27] -rw------- 1 boinc boinc        95 Oct 18 08:17 pilot_heartbeat.json
[2025-10-18 08:18:27] -rw------- 1 boinc boinc      1016 Oct 18 08:17 memory_monitor_summary.json
[2025-10-18 08:18:27] -rw------- 1 boinc boinc    274100 Oct 18 08:17 log.46771637._026002.job.log.tgz.1
[2025-10-18 08:18:27] -rw------- 1 boinc boinc      7752 Oct 18 08:17 heartbeat.json
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc      8192 Oct 18 08:18 boinc_mmap_file
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc        27 Oct 18 08:18 wrapper_checkpoint.txt
[2025-10-18 08:18:27] -rw------- 1 boinc boinc       747 Oct 18 08:18 pilotlog.txt
[2025-10-18 08:18:27] -rw------- 1 boinc boinc   1129656 Oct 18 08:18 log.46771637._026002.job.log.1
[2025-10-18 08:18:27] -rw------- 1 boinc boinc       357 Oct 18 08:18 output.list
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc       620 Oct 18 08:18 runtime_log
[2025-10-18 08:18:27] -rw------- 1 boinc boinc   1423360 Oct 18 08:18 result.tar.gz
[2025-10-18 08:18:27] -rw------- 1 boinc boinc       659 Oct 18 08:18 uyyLDmcyyT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3htNDmEuEZUm.diag
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc      8777 Oct 18 08:18 runtime_log.err
[2025-10-18 08:18:27] -rw-r--r-- 1 boinc boinc     11725 Oct 18 08:18 stderr.txt
[2025-10-18 08:18:27] HITS file was successfully produced:
[2025-10-18 08:18:27] -rw------- 1 boinc boinc 199429628 Oct 18 08:17 shared/HITS.pool.root.1
[2025-10-18 08:18:27]  *** Contents of shared directory: ***
[2025-10-18 08:18:27] total 420060
[2025-10-18 08:18:27] -rw-r--r-- 2 boinc boinc 228689914 Oct 18 06:06 ATLAS.root_0
[2025-10-18 08:18:27] -rw-r--r-- 2 boinc boinc    569677 Oct 18 06:06 input.tar.gz
[2025-10-18 08:18:27] -rw-r--r-- 2 boinc boinc     15120 Oct 18 06:06 start_atlas.sh
[2025-10-18 08:18:27] -rw------- 1 boinc boinc 199429628 Oct 18 08:17 HITS.pool.root.1
[2025-10-18 08:18:27] -rw------- 1 boinc boinc   1423360 Oct 18 08:18 result.tar.gz
08:18:28 (3425890): run_atlas exited; CPU time 15306.420223
08:18:28 (3425890): called boinc_finish(0)

</stderr_txt>
]]>

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