Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:49:00 (1028): wrapper (7.7.26015): starting
12:49:00 (1028): wrapper: running run_atlas (--nthreads 8)
[2025-10-17 12:49:00] Arguments: --nthreads 8
[2025-10-17 12:49:00] Threads: 8
[2025-10-17 12:49:00] Checking for CVMFS
[2025-10-17 12:49:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 12:49:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 12:49:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 12:49:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 12:49:00] 2.11.2.0 2932 208869 119600 151822 1 59 17602830 20275200 1 130560 1 76457495 99.972 10824141 14202 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-17 12:49:00] CVMFS is ok
[2025-10-17 12:49:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-17 12:49:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-17 12:49:00] Further information can be found at the LHC@home message board.
[2025-10-17 12:49:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 12:49:00] Checking for apptainer binary...
[2025-10-17 12:49:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 12:49:00] Running /usr/bin/apptainer --version
[2025-10-17 12:49:00] apptainer version 1.3.2-1.el7
[2025-10-17 12:49:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 12:49:02] c-204-17.aglt2.org
[2025-10-17 12:49:02] apptainer works
[2025-10-17 12:49:02] Set ATHENA_PROC_NUMBER=8
[2025-10-17 12:49:02] Set ATHENA_CORE_NUMBER=8
[2025-10-17 12:49:02] Starting ATLAS job with PandaID=6847998161
[2025-10-17 12:49:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:46:51 (2068): wrapper (7.7.26015): starting
14:46:51 (2068): wrapper: running run_atlas (--nthreads 8)
[2025-10-17 14:46:51] Arguments: --nthreads 8
[2025-10-17 14:46:51] Threads: 8
[2025-10-17 14:46:51] This job has been restarted, cleaning up previous attempt
[2025-10-17 14:46:51] Checking for CVMFS
[2025-10-17 14:46:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 14:46:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 14:46:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 14:46:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 14:46:52] 2.11.2.0 2932 208986 119292 151825 3 39 17710612 20275200 1 130560 1 76535298 99.972 10828115 14205 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-17 14:46:52] CVMFS is ok
[2025-10-17 14:46:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-17 14:46:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-17 14:46:52] Further information can be found at the LHC@home message board.
[2025-10-17 14:46:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 14:46:52] Checking for apptainer binary...
[2025-10-17 14:46:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 14:46:52] Running /usr/bin/apptainer --version
[2025-10-17 14:46:52] apptainer version 1.3.2-1.el7
[2025-10-17 14:46:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 14:46:53] c-204-17.aglt2.org
[2025-10-17 14:46:53] apptainer works
[2025-10-17 14:46:54] Set ATHENA_PROC_NUMBER=8
[2025-10-17 14:46:54] Set ATHENA_CORE_NUMBER=8
[2025-10-17 14:46:54] Starting ATLAS job with PandaID=6847998161
[2025-10-17 14:46:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-17 17:01:30]  *** The last 200 lines of the pilot log: ***
[2025-10-17 17:01:30] 2025-10-17 21:00:38,606 | INFO     | monitor loop #592: job 0:6847998161 is in state 'finished'
[2025-10-17 17:01:30] 2025-10-17 21:00:38,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 17:01:30] 2025-10-17 21:00:38,647 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-17 17:01:30] 2025-10-17 21:00:38,651 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-10-17 17:01:30] 2025-10-17 21:00:38,653 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6847998161/memory_monitor_summary.json (trf name=prmon)
[2025-10-17 17:01:30] 2025-10-17 21:00:38,654 | INFO     | extracted standard info from prmon json
[2025-10-17 17:01:30] 2025-10-17 21:00:38,654 | INFO     | extracted standard memory fields from prmon json
[2025-10-17 17:01:30] 2025-10-17 21:00:38,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-17 17:01:30] 2025-10-17 21:00:38,655 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-17 17:01:30] 2025-10-17 21:00:38,655 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-17 17:01:30] 2025-10-17 21:00:38,659 | INFO     | fitting pss+swap vs Time
[2025-10-17 17:01:30] 2025-10-17 21:00:38,659 | INFO     | sum of square deviations: 697054930.0
[2025-10-17 17:01:30] 2025-10-17 21:00:38,660 | INFO     | sum of deviations: 5810472772.000003
[2025-10-17 17:01:30] 2025-10-17 21:00:38,660 | INFO     | mean x: 1760730827.0
[2025-10-17 17:01:30] 2025-10-17 21:00:38,660 | INFO     | mean y: 2512587.9236641224
[2025-10-17 17:01:30] 2025-10-17 21:00:38,660 | INFO     | -- intersect: -14674492177.116228
[2025-10-17 17:01:30] 2025-10-17 21:00:38,660 | INFO     | intersect: -14674492177.116228
[2025-10-17 17:01:30] 2025-10-17 21:00:38,661 | INFO     | chi2: 1.605724305426836
[2025-10-17 17:01:30] 2025-10-17 21:00:38,661 | INFO     | sum of square deviations: 620244187.5
[2025-10-17 17:01:30] 2025-10-17 21:00:38,661 | INFO     | sum of deviations: 5741500925.99999
[2025-10-17 17:01:30] 2025-10-17 21:00:38,662 | INFO     | mean x: 1760730674.5
[2025-10-17 17:01:30] 2025-10-17 21:00:38,662 | INFO     | mean y: 2512451.492063492
[2025-10-17 17:01:30] 2025-10-17 21:00:38,662 | INFO     | -- intersect: -16296288894.515451
[2025-10-17 17:01:30] 2025-10-17 21:00:38,662 | INFO     | intersect: -16296288894.515451
[2025-10-17 17:01:30] 2025-10-17 21:00:38,662 | INFO     | chi2: 1.6077726342163299
[2025-10-17 17:01:30] 2025-10-17 21:00:38,662 | INFO     | current chi2=1.6077726342163299 (change=-0.12756416419501185 %)
[2025-10-17 17:01:30] 2025-10-17 21:00:38,663 | INFO     | right removable region: 125
[2025-10-17 17:01:30] 2025-10-17 21:00:38,663 | INFO     | sum of square deviations: 620244187.5
[2025-10-17 17:01:30] 2025-10-17 21:00:38,663 | INFO     | sum of deviations: -14011717080.000002
[2025-10-17 17:01:30] 2025-10-17 21:00:38,663 | INFO     | mean x: 1760730979.5
[2025-10-17 17:01:30] 2025-10-17 21:00:38,664 | INFO     | mean y: 2551244.3174603176
[2025-10-17 17:01:30] 2025-10-17 21:00:38,664 | INFO     | -- intersect: 39778602090.01004
[2025-10-17 17:01:30] 2025-10-17 21:00:38,664 | INFO     | intersect: 39778602090.01004
[2025-10-17 17:01:30] 2025-10-17 21:00:38,664 | INFO     | chi2: 0.108557712163279
[2025-10-17 17:01:30] 2025-10-17 21:00:38,664 | INFO     | current chi2=0.108557712163279 (change=93.23933057521839 %)
[2025-10-17 17:01:30] 2025-10-17 21:00:38,665 | INFO     | sum of square deviations: 549294020.0
[2025-10-17 17:01:30] 2025-10-17 21:00:38,665 | INFO     | sum of deviations: -13469709022.000002
[2025-10-17 17:01:30] 2025-10-17 21:00:38,665 | INFO     | mean x: 1760731132.0
[2025-10-17 17:01:30] 2025-10-17 21:00:38,665 | INFO     | mean y: 2549959.8512396696
[2025-10-17 17:01:30] 2025-10-17 21:00:38,665 | INFO     | -- intersect: 43178945752.43001
[2025-10-17 17:01:30] 2025-10-17 21:00:38,666 | INFO     | intersect: 43178945752.43001
[2025-10-17 17:01:30] 2025-10-17 21:00:38,666 | INFO     | chi2: 0.09214156893739006
[2025-10-17 17:01:30] 2025-10-17 21:00:38,666 | INFO     | current chi2=0.09214156893739006 (change=15.122042366918917 %)
[2025-10-17 17:01:30] 2025-10-17 21:00:38,666 | INFO     | left removable region: 20
[2025-10-17 17:01:30] 2025-10-17 21:00:38,666 | INFO     | sum of square deviations: 358927660.0
[2025-10-17 17:01:30] 2025-10-17 21:00:38,667 | INFO     | sum of deviations: -5412885874.0
[2025-10-17 17:01:30] 2025-10-17 21:00:38,667 | INFO     | mean x: 1760731254.0
[2025-10-17 17:01:30] 2025-10-17 21:00:38,667 | INFO     | mean y: 2531841.3904761905
[2025-10-17 17:01:30] 2025-10-17 21:00:38,667 | INFO     | -- intersect: 26555618702.087994
[2025-10-17 17:01:30] 2025-10-17 21:00:38,667 | INFO     | intersect: 26555618702.087994
[2025-10-17 17:01:30] 2025-10-17 21:00:38,668 | INFO     | chi2: 0.05835724369007852
[2025-10-17 17:01:30] 2025-10-17 21:00:38,668 | INFO     | -- intersect: 26555618702.087994
[2025-10-17 17:01:30] 2025-10-17 21:00:38,668 | INFO     | current memory leak: -15.08 B/s (using 105 data points, chi2=0.06)
[2025-10-17 17:01:30] 2025-10-17 21:00:38,668 | INFO     | could have reported an average CPU frequency of 1987 MHz (8 samples)
[2025-10-17 17:01:30] 2025-10-17 21:00:38,668 | INFO     | ..............................
[2025-10-17 17:01:30] 2025-10-17 21:00:38,668 | INFO     | . Timing measurements:
[2025-10-17 17:01:30] 2025-10-17 21:00:38,669 | INFO     | . get job = 0 s
[2025-10-17 17:01:30] 2025-10-17 21:00:38,669 | INFO     | . initial setup = 1 s
[2025-10-17 17:01:30] 2025-10-17 21:00:38,669 | INFO     | . payload setup = 8 s
[2025-10-17 17:01:30] 2025-10-17 21:00:38,669 | INFO     | . stage-in = 0 s
[2025-10-17 17:01:30] 2025-10-17 21:00:38,669 | INFO     | . payload execution = 7966 s
[2025-10-17 17:01:30] 2025-10-17 21:00:38,669 | INFO     | . stage-out = 2 s
[2025-10-17 17:01:30] 2025-10-17 21:00:38,669 | INFO     | . log creation = 0 s
[2025-10-17 17:01:30] 2025-10-17 21:00:38,669 | INFO     | ..............................
[2025-10-17 17:01:30] 2025-10-17 21:00:39,201 | INFO     | 
[2025-10-17 17:01:30] 2025-10-17 21:00:39,202 | INFO     | job summary report
[2025-10-17 17:01:30] 2025-10-17 21:00:39,202 | INFO     | --------------------------------------------------
[2025-10-17 17:01:30] 2025-10-17 21:00:39,202 | INFO     | PanDA job id: 6847998161
[2025-10-17 17:01:30] 2025-10-17 21:00:39,202 | INFO     | task id: 46771637
[2025-10-17 17:01:30] 2025-10-17 21:00:39,202 | INFO     | errors: (none)
[2025-10-17 17:01:30] 2025-10-17 21:00:39,203 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-17 17:01:30] 2025-10-17 21:00:39,203 | INFO     | pilot state: finished 
[2025-10-17 17:01:30] 2025-10-17 21:00:39,203 | INFO     | transexitcode: 0
[2025-10-17 17:01:30] 2025-10-17 21:00:39,203 | INFO     | exeerrorcode: 0
[2025-10-17 17:01:30] 2025-10-17 21:00:39,203 | INFO     | exeerrordiag: 
[2025-10-17 17:01:30] 2025-10-17 21:00:39,204 | INFO     | exitcode: 0
[2025-10-17 17:01:30] 2025-10-17 21:00:39,204 | INFO     | exitmsg: OK
[2025-10-17 17:01:30] 2025-10-17 21:00:39,204 | INFO     | cpuconsumptiontime: 58640 s
[2025-10-17 17:01:30] 2025-10-17 21:00:39,204 | INFO     | nevents: 400
[2025-10-17 17:01:30] 2025-10-17 21:00:39,204 | INFO     | neventsw: 0
[2025-10-17 17:01:30] 2025-10-17 21:00:39,204 | INFO     | pid: 12421
[2025-10-17 17:01:30] 2025-10-17 21:00:39,205 | INFO     | pgrp: 12421
[2025-10-17 17:01:30] 2025-10-17 21:00:39,205 | INFO     | corecount: 8
[2025-10-17 17:01:30] 2025-10-17 21:00:39,205 | INFO     | event service: False
[2025-10-17 17:01:30] 2025-10-17 21:00:39,205 | INFO     | sizes: {0: 2348929, 1: 2348929, 6: 2349219, 11: 2349247, 7978: 2376933, 7981: 2385931, 7982: 2386115, 7991: 2386309}
[2025-10-17 17:01:30] 2025-10-17 21:00:39,205 | INFO     | --------------------------------------------------
[2025-10-17 17:01:30] 2025-10-17 21:00:39,206 | INFO     | 
[2025-10-17 17:01:30] 2025-10-17 21:00:39,206 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-17 17:01:30] 2025-10-17 21:00:39,234 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,234 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,234 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,235 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,235 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,235 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,235 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,235 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,235 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,236 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,236 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,236 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,236 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,236 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,237 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,237 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,237 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,237 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-17 17:01:30] 2025-10-17 21:00:39,237 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,237 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-17 17:01:30] 2025-10-17 21:00:39,238 | INFO     | job 6847998161 has completed (purged errors)
[2025-10-17 17:01:30] 2025-10-17 21:00:39,238 | INFO     | overall cleanup function is called
[2025-10-17 17:01:30] 2025-10-17 21:00:40,242 | INFO     | --- collectZombieJob: --- 10, [12421]
[2025-10-17 17:01:30] 2025-10-17 21:00:40,242 | INFO     | zombie collector waiting for pid 12421
[2025-10-17 17:01:30] 2025-10-17 21:00:40,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-17 17:01:30] 2025-10-17 21:00:40,254 | INFO     | collected zombie processes
[2025-10-17 17:01:30] 2025-10-17 21:00:40,254 | INFO     | will attempt to kill all subprocesses of pid=12421
[2025-10-17 17:01:30] 2025-10-17 21:00:40,343 | INFO     | process IDs to be killed: [12421] (in reverse order)
[2025-10-17 17:01:30] 2025-10-17 21:00:40,394 | WARNING  | found no corresponding commands to process id(s)
[2025-10-17 17:01:30] 2025-10-17 21:00:40,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-17 17:01:30] 2025-10-17 21:00:40,398 | INFO     | did not find any defunct processes belonging to 12421
[2025-10-17 17:01:30] 2025-10-17 21:00:40,401 | INFO     | did not find any defunct processes belonging to 12421
[2025-10-17 17:01:30] 2025-10-17 21:00:40,401 | INFO     | ready for new job
[2025-10-17 17:01:30] 2025-10-17 21:00:40,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-17 17:01:30] 2025-10-17 21:00:40,403 | INFO     | ***************************************
[2025-10-17 17:01:30] 2025-10-17 21:00:40,403 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-17 17:01:30] 2025-10-17 21:00:40,403 | INFO     | ***************************************
[2025-10-17 17:01:30] 2025-10-17 21:00:40,404 | INFO     | 
[2025-10-17 17:01:30] 2025-10-17 21:00:40,404 | INFO     | architecture information:
[2025-10-17 17:01:30] 2025-10-17 21:00:40,405 | INFO     | executing command: cat /etc/os-release
[2025-10-17 17:01:30] 2025-10-17 21:00:40,422 | INFO     | cat /etc/os-release:
[2025-10-17 17:01:30] NAME="CentOS Linux"
[2025-10-17 17:01:30] VERSION="7 (Core)"
[2025-10-17 17:01:30] ID="centos"
[2025-10-17 17:01:30] ID_LIKE="rhel fedora"
[2025-10-17 17:01:30] VERSION_ID="7"
[2025-10-17 17:01:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-17 17:01:30] ANSI_COLOR="0;31"
[2025-10-17 17:01:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-17 17:01:30] HOME_URL="https://www.centos.org/"
[2025-10-17 17:01:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-17 17:01:30] 
[2025-10-17 17:01:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-17 17:01:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-17 17:01:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-17 17:01:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-17 17:01:30] 
[2025-10-17 17:01:30] 2025-10-17 21:00:40,422 | INFO     | ***************************************
[2025-10-17 17:01:30] 2025-10-17 21:00:40,925 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-17 17:01:30] 2025-10-17 21:00:40,945 | INFO     | sufficient remaining disk space (18530435072 B)
[2025-10-17 17:01:30] 2025-10-17 21:00:40,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-17 17:01:30] 2025-10-17 21:00:40,945 | INFO     | current server update state: UPDATING_FINAL
[2025-10-17 17:01:30] 2025-10-17 21:00:40,945 | INFO     | update_server=False
[2025-10-17 17:01:30] 2025-10-17 21:00:40,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-17 17:01:30] 2025-10-17 21:00:40,946 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-17 17:01:30] 2025-10-17 21:00:41,056 | INFO     | all payload control threads have been joined
[2025-10-17 17:01:30] 2025-10-17 21:00:41,110 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-17 17:01:30] 2025-10-17 21:00:41,110 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-17 17:01:30] 2025-10-17 21:00:41,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-17 17:01:30] 2025-10-17 21:00:41,111 | INFO     | will abort loop
[2025-10-17 17:01:30] 2025-10-17 21:00:41,434 | INFO     | all data control threads have been joined
[2025-10-17 17:01:30] 2025-10-17 21:00:41,951 | INFO     | [job] retrieve thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:41,966 | INFO     | [job] create_data_payload thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:42,044 | INFO     | [data] copytool_in thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:42,057 | INFO     | [payload] control thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:42,116 | INFO     | [job] job monitor thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:42,134 | INFO     | [payload] failed_post thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:42,185 | INFO     | [payload] validate_pre thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:42,235 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-17 17:01:30] 2025-10-17 21:00:42,249 | INFO     | all job control threads have been joined
[2025-10-17 17:01:30] 2025-10-17 21:00:42,355 | INFO     | [payload] execute_payloads thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:42,434 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:42,440 | INFO     | [data] control thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:43,254 | INFO     | [job] control thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:43,289 | INFO     | [job] validate thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:43,455 | INFO     | [payload] validate_post thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:43,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-17 17:01:30] 2025-10-17 21:00:44,236 | INFO     | [data] copytool_out thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:44,780 | INFO     | [job] queue monitor thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:00:44,952 | INFO     | [data] queue_monitor thread has finished
[2025-10-17 17:01:30] 2025-10-17 21:01:10,818 | INFO     | PID=6050 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-17 17:01:30] 2025-10-17 21:01:10,819 | INFO     | found 0 job(s) in 20 queues
[2025-10-17 17:01:30] 2025-10-17 21:01:10,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-17 17:01:30] 2025-10-17 21:01:10,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-17 17:01:30] 2025-10-17 21:01:23,061 | INFO     | [monitor] cgroup control has ended
[2025-10-17 17:01:30] 2025-10-17 21:01:25,022 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956270458688)>', '<ExcThread(monitor, started 139955292579584)>']
[2025-10-17 17:01:30] 2025-10-17 21:01:25,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-17 17:01:30] 2025-10-17 21:01:25,868 | INFO     | [monitor] control thread has ended
[2025-10-17 17:01:30] 2025-10-17 21:01:30,047 | INFO     | all workflow threads have been joined
[2025-10-17 17:01:30] 2025-10-17 21:01:30,048 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-17 17:01:30] 2025-10-17 21:01:30,048 | INFO     | traces error code: 0
[2025-10-17 17:01:30] 2025-10-17 21:01:30,049 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-17 17:01:30] 2025-10-17 21:01:30,163 [wrapper] ==== pilot stdout END ====
[2025-10-17 17:01:30] 2025-10-17 21:01:30,168 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-17 17:01:30] 2025-10-17 21:01:30,172 [wrapper] pilotpid: 6050
[2025-10-17 17:01:30] 2025-10-17 21:01:30,177 [wrapper] Pilot exit status: 0
[2025-10-17 17:01:30] 2025-10-17 21:01:30,197 [wrapper] pandaids: 6847998161 6847998161
[2025-10-17 17:01:30] 2025-10-17 21:01:30,252 [wrapper] cleanup supervisor_pilot 17481 6051
[2025-10-17 17:01:30] 2025-10-17 21:01:30,257 [wrapper] Test setup, not cleaning
[2025-10-17 17:01:30] 2025-10-17 21:01:30,262 [wrapper] apfmon messages muted
[2025-10-17 17:01:30] 2025-10-17 21:01:30,266 [wrapper] ==== wrapper stdout END ====
[2025-10-17 17:01:30] 2025-10-17 21:01:30,271 [wrapper] ==== wrapper stderr END ====
[2025-10-17 17:01:30]  *** Error codes and diagnostics ***
[2025-10-17 17:01:30]     "exeErrorCode": 0,
[2025-10-17 17:01:30]     "exeErrorDiag": "",
[2025-10-17 17:01:30]     "pilotErrorCode": 0,
[2025-10-17 17:01:30]     "pilotErrorDiag": "",
[2025-10-17 17:01:30]  *** Listing of results directory ***
[2025-10-17 17:01:30] total 645220
[2025-10-17 17:01:30] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas    557409 Oct 17 10:11 pilot3.tar.gz
[2025-10-17 17:01:30] -rwx------ 1 boincer umatlas     36292 Oct 17 10:20 runpilot2-wrapper.sh
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas      5112 Oct 17 10:20 queuedata.json
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas       100 Oct 17 12:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-17 17:01:30] -rwxr-xr-x 1 boincer umatlas      7986 Oct 17 12:48 run_atlas
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas       105 Oct 17 12:48 job.xml
[2025-10-17 17:01:30] -rw-r--r-- 3 boincer umatlas 226077367 Oct 17 12:49 EVNT.46771634._001228.pool.root.1
[2025-10-17 17:01:30] -rw-r--r-- 3 boincer umatlas 226077367 Oct 17 12:49 ATLAS.root_0
[2025-10-17 17:01:30] -rw-r--r-- 2 boincer umatlas     15120 Oct 17 12:49 start_atlas.sh
[2025-10-17 17:01:30] drwxrwx--x 2 boincer umatlas      4096 Oct 17 12:49 shared
[2025-10-17 17:01:30] -rw-r--r-- 2 boincer umatlas    569670 Oct 17 12:49 input.tar.gz
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas         0 Oct 17 12:49 boinc_lockfile
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas      2558 Oct 17 14:46 pandaJob.out
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas    976741 Oct 17 14:47 agis_schedconf.cvmfs.json
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas      5911 Oct 17 16:55 init_data.xml
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas 201662915 Oct 17 16:59 HITS.46771637._027213.pool.root.1
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas       531 Oct 17 17:00 boinc_task_state.xml
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas      1049 Oct 17 17:00 memory_monitor_summary.json
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas   1560740 Oct 17 17:00 agis_ddmendpoints.agis.ALL.json
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas    367978 Oct 17 17:00 log.46771637._027213.job.log.tgz.1
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas      7847 Oct 17 17:00 heartbeat.json
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas      8192 Oct 17 17:00 boinc_mmap_file
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas        29 Oct 17 17:00 wrapper_checkpoint.txt
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas        96 Oct 17 17:01 pilot_heartbeat.json
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas      4931 Oct 17 17:01 pilotlog.txt
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas   1121076 Oct 17 17:01 log.46771637._027213.job.log.1
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas       357 Oct 17 17:01 output.list
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas       620 Oct 17 17:01 runtime_log
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas   1505280 Oct 17 17:01 result.tar.gz
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas      8788 Oct 17 17:01 runtime_log.err
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas       785 Oct 17 17:01 5ySLDmbU0T8n9Rq4apOajLDm4fhM0noT9bVof3QYDmTLaMDmx9Lrbm.diag
[2025-10-17 17:01:30] -rw-r--r-- 1 boincer umatlas     23254 Oct 17 17:01 stderr.txt
[2025-10-17 17:01:30] HITS file was successfully produced:
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas 201662915 Oct 17 16:59 shared/HITS.pool.root.1
[2025-10-17 17:01:30]  *** Contents of shared directory: ***
[2025-10-17 17:01:30] total 419776
[2025-10-17 17:01:30] -rw-r--r-- 3 boincer umatlas 226077367 Oct 17 12:49 ATLAS.root_0
[2025-10-17 17:01:30] -rw-r--r-- 2 boincer umatlas     15120 Oct 17 12:49 start_atlas.sh
[2025-10-17 17:01:30] -rw-r--r-- 2 boincer umatlas    569670 Oct 17 12:49 input.tar.gz
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas 201662915 Oct 17 16:59 HITS.pool.root.1
[2025-10-17 17:01:30] -rw------- 1 boincer umatlas   1505280 Oct 17 17:01 result.tar.gz
17:01:32 (2068): run_atlas exited; CPU time 58574.269285
17:01:32 (2068): called boinc_finish(0)

</stderr_txt>
]]>

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