Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:41:48 (24919): wrapper (7.7.26015): starting
12:41:48 (24919): wrapper: running run_atlas (--nthreads 8)
[2025-10-17 12:41:48] Arguments: --nthreads 8
[2025-10-17 12:41:48] Threads: 8
[2025-10-17 12:41:48] Checking for CVMFS
[2025-10-17 12:41:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 12:41:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 12:41:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 12:41:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 12:41:48] 2.11.2.0 2765 9900 77460 151822 0 58 16914142 20275200 1 130560 0 5763500 99.970 647649 38420 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-17 12:41:48] CVMFS is ok
[2025-10-17 12:41:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-17 12:41:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-17 12:41:48] Further information can be found at the LHC@home message board.
[2025-10-17 12:41:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 12:41:48] Checking for apptainer binary...
[2025-10-17 12:41:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 12:41:48] Running /usr/bin/apptainer --version
[2025-10-17 12:41:48] apptainer version 1.3.2-1.el7
[2025-10-17 12:41:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 12:41:50] c-204-21.aglt2.org
[2025-10-17 12:41:50] apptainer works
[2025-10-17 12:41:50] Set ATHENA_PROC_NUMBER=8
[2025-10-17 12:41:50] Set ATHENA_CORE_NUMBER=8
[2025-10-17 12:41:50] Starting ATLAS job with PandaID=6847351931
[2025-10-17 12:41:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:28:00 (8833): wrapper (7.7.26015): starting
13:28:00 (8833): wrapper: running run_atlas (--nthreads 8)
[2025-10-17 13:28:00] Arguments: --nthreads 8
[2025-10-17 13:28:00] Threads: 8
[2025-10-17 13:28:00] This job has been restarted, cleaning up previous attempt
[2025-10-17 13:28:00] Checking for CVMFS
[2025-10-17 13:28:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 13:28:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 13:28:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 13:28:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 13:28:01] 2.11.2.0 2765 9946 78020 151823 2 11 16962755 20275201 1 130560 0 5829598 99.970 649028 38410 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-17 13:28:01] CVMFS is ok
[2025-10-17 13:28:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-17 13:28:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-17 13:28:01] Further information can be found at the LHC@home message board.
[2025-10-17 13:28:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 13:28:01] Checking for apptainer binary...
[2025-10-17 13:28:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 13:28:01] Running /usr/bin/apptainer --version
[2025-10-17 13:28:01] apptainer version 1.3.2-1.el7
[2025-10-17 13:28:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 13:28:02] c-204-21.aglt2.org
[2025-10-17 13:28:02] apptainer works
[2025-10-17 13:28:02] Set ATHENA_PROC_NUMBER=8
[2025-10-17 13:28:02] Set ATHENA_CORE_NUMBER=8
[2025-10-17 13:28:02] Starting ATLAS job with PandaID=6847351931
[2025-10-17 13:28:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-17 15:44:40]  *** The last 200 lines of the pilot log: ***
[2025-10-17 15:44:40] 2025-10-17 19:44:07,190 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-17 15:44:40] 2025-10-17 19:44:07,194 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-10-17 15:44:40] 2025-10-17 19:44:07,196 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6847351931/memory_monitor_summary.json (trf name=prmon)
[2025-10-17 15:44:40] 2025-10-17 19:44:07,197 | INFO     | extracted standard info from prmon json
[2025-10-17 15:44:40] 2025-10-17 19:44:07,197 | INFO     | extracted standard memory fields from prmon json
[2025-10-17 15:44:40] 2025-10-17 19:44:07,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-17 15:44:40] 2025-10-17 19:44:07,198 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-17 15:44:40] 2025-10-17 19:44:07,198 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-17 15:44:40] 2025-10-17 19:44:07,200 | INFO     | fitting pss+swap vs Time
[2025-10-17 15:44:40] 2025-10-17 19:44:07,201 | INFO     | sum of square deviations: 729472282.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,201 | INFO     | sum of deviations: -431527298.00000197
[2025-10-17 15:44:40] 2025-10-17 19:44:07,202 | INFO     | mean x: 1760726157.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,202 | INFO     | mean y: 2533641.4285714286
[2025-10-17 15:44:40] 2025-10-17 19:44:07,202 | INFO     | -- intersect: 1044110435.7722629
[2025-10-17 15:44:40] 2025-10-17 19:44:07,202 | INFO     | intersect: 1044110435.7722629
[2025-10-17 15:44:40] 2025-10-17 19:44:07,202 | INFO     | chi2: 1.6602142028962072
[2025-10-17 15:44:40] 2025-10-17 19:44:07,203 | INFO     | sum of square deviations: 650252192.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,203 | INFO     | sum of deviations: -142725268.5
[2025-10-17 15:44:40] 2025-10-17 19:44:07,203 | INFO     | mean x: 1760726004.5
[2025-10-17 15:44:40] 2025-10-17 19:44:07,204 | INFO     | mean y: 2534197.6484375
[2025-10-17 15:44:40] 2025-10-17 19:44:07,204 | INFO     | -- intersect: 388999779.52408415
[2025-10-17 15:44:40] 2025-10-17 19:44:07,204 | INFO     | intersect: 388999779.52408415
[2025-10-17 15:44:40] 2025-10-17 19:44:07,204 | INFO     | chi2: 1.661232367317815
[2025-10-17 15:44:40] 2025-10-17 19:44:07,204 | INFO     | current chi2=1.661232367317815 (change=-0.06132729257656526 %)
[2025-10-17 15:44:40] 2025-10-17 19:44:07,204 | INFO     | right removable region: 127
[2025-10-17 15:44:40] 2025-10-17 19:44:07,205 | INFO     | sum of square deviations: 650252192.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,205 | INFO     | sum of deviations: -20794738136.5
[2025-10-17 15:44:40] 2025-10-17 19:44:07,205 | INFO     | mean x: 1760726309.5
[2025-10-17 15:44:40] 2025-10-17 19:44:07,205 | INFO     | mean y: 2572164.3515625
[2025-10-17 15:44:40] 2025-10-17 19:44:07,206 | INFO     | -- intersect: 56309714203.32612
[2025-10-17 15:44:40] 2025-10-17 19:44:07,206 | INFO     | intersect: 56309714203.32612
[2025-10-17 15:44:40] 2025-10-17 19:44:07,206 | INFO     | chi2: 0.14604941386994422
[2025-10-17 15:44:40] 2025-10-17 19:44:07,206 | INFO     | current chi2=0.14604941386994422 (change=91.20297768714639 %)
[2025-10-17 15:44:40] 2025-10-17 19:44:07,206 | INFO     | sum of square deviations: 576985702.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,207 | INFO     | sum of deviations: -20327287115.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,207 | INFO     | mean x: 1760726462.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,207 | INFO     | mean y: 2571070.073170732
[2025-10-17 15:44:40] 2025-10-17 19:44:07,207 | INFO     | -- intersect: 62033210997.52866
[2025-10-17 15:44:40] 2025-10-17 19:44:07,207 | INFO     | intersect: 62033210997.52866
[2025-10-17 15:44:40] 2025-10-17 19:44:07,208 | INFO     | chi2: 0.12311367036594476
[2025-10-17 15:44:40] 2025-10-17 19:44:07,208 | INFO     | current chi2=0.12311367036594476 (change=15.704098288558384 %)
[2025-10-17 15:44:40] 2025-10-17 19:44:07,208 | INFO     | left removable region: 20
[2025-10-17 15:44:40] 2025-10-17 19:44:07,208 | INFO     | sum of square deviations: 379832238.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,209 | INFO     | sum of deviations: -12252741820.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,209 | INFO     | mean x: 1760726584.0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,209 | INFO     | mean y: 2555571.8971962617
[2025-10-17 15:44:40] 2025-10-17 19:44:07,209 | INFO     | -- intersect: 56800599789.94102
[2025-10-17 15:44:40] 2025-10-17 19:44:07,209 | INFO     | intersect: 56800599789.94102
[2025-10-17 15:44:40] 2025-10-17 19:44:07,209 | INFO     | chi2: 0.10777771204377486
[2025-10-17 15:44:40] 2025-10-17 19:44:07,210 | INFO     | -- intersect: 56800599789.94102
[2025-10-17 15:44:40] 2025-10-17 19:44:07,210 | INFO     | current memory leak: -32.26 B/s (using 107 data points, chi2=0.11)
[2025-10-17 15:44:40] 2025-10-17 19:44:07,210 | INFO     | could have reported an average CPU frequency of 2008 MHz (8 samples)
[2025-10-17 15:44:40] 2025-10-17 19:44:07,210 | INFO     | ..............................
[2025-10-17 15:44:40] 2025-10-17 19:44:07,210 | INFO     | . Timing measurements:
[2025-10-17 15:44:40] 2025-10-17 19:44:07,211 | INFO     | . get job = 0 s
[2025-10-17 15:44:40] 2025-10-17 19:44:07,211 | INFO     | . initial setup = 1 s
[2025-10-17 15:44:40] 2025-10-17 19:44:07,211 | INFO     | . payload setup = 8 s
[2025-10-17 15:44:40] 2025-10-17 19:44:07,211 | INFO     | . stage-in = 0 s
[2025-10-17 15:44:40] 2025-10-17 19:44:07,211 | INFO     | . payload execution = 8104 s
[2025-10-17 15:44:40] 2025-10-17 19:44:07,211 | INFO     | . stage-out = 2 s
[2025-10-17 15:44:40] 2025-10-17 19:44:07,211 | INFO     | . log creation = 0 s
[2025-10-17 15:44:40] 2025-10-17 19:44:07,211 | INFO     | ..............................
[2025-10-17 15:44:40] 2025-10-17 19:44:07,302 | INFO     | 
[2025-10-17 15:44:40] 2025-10-17 19:44:07,302 | INFO     | job summary report
[2025-10-17 15:44:40] 2025-10-17 19:44:07,302 | INFO     | --------------------------------------------------
[2025-10-17 15:44:40] 2025-10-17 19:44:07,302 | INFO     | PanDA job id: 6847351931
[2025-10-17 15:44:40] 2025-10-17 19:44:07,303 | INFO     | task id: 46771637
[2025-10-17 15:44:40] 2025-10-17 19:44:07,303 | INFO     | errors: (none)
[2025-10-17 15:44:40] 2025-10-17 19:44:07,303 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-17 15:44:40] 2025-10-17 19:44:07,303 | INFO     | pilot state: finished 
[2025-10-17 15:44:40] 2025-10-17 19:44:07,303 | INFO     | transexitcode: 0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,303 | INFO     | exeerrorcode: 0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,304 | INFO     | exeerrordiag: 
[2025-10-17 15:44:40] 2025-10-17 19:44:07,304 | INFO     | exitcode: 0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,304 | INFO     | exitmsg: OK
[2025-10-17 15:44:40] 2025-10-17 19:44:07,304 | INFO     | cpuconsumptiontime: 60243 s
[2025-10-17 15:44:40] 2025-10-17 19:44:07,304 | INFO     | nevents: 400
[2025-10-17 15:44:40] 2025-10-17 19:44:07,304 | INFO     | neventsw: 0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,305 | INFO     | pid: 19898
[2025-10-17 15:44:40] 2025-10-17 19:44:07,305 | INFO     | pgrp: 19898
[2025-10-17 15:44:40] 2025-10-17 19:44:07,305 | INFO     | corecount: 8
[2025-10-17 15:44:40] 2025-10-17 19:44:07,305 | INFO     | event service: False
[2025-10-17 15:44:40] 2025-10-17 19:44:07,305 | INFO     | sizes: {0: 2348927, 6: 2349189, 11: 2349217, 8117: 2376958, 8119: 2385956, 8122: 2386012, 8130: 2386334}
[2025-10-17 15:44:40] 2025-10-17 19:44:07,306 | INFO     | --------------------------------------------------
[2025-10-17 15:44:40] 2025-10-17 19:44:07,306 | INFO     | 
[2025-10-17 15:44:40] 2025-10-17 19:44:07,306 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-17 15:44:40] 2025-10-17 19:44:07,333 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,333 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,334 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,334 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,334 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,335 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,336 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,336 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,336 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,336 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,336 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,336 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-17 15:44:40] 2025-10-17 19:44:07,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,337 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-17 15:44:40] 2025-10-17 19:44:07,337 | INFO     | job 6847351931 has completed (purged errors)
[2025-10-17 15:44:40] 2025-10-17 19:44:07,337 | INFO     | overall cleanup function is called
[2025-10-17 15:44:40] 2025-10-17 19:44:07,682 | INFO     | PID=13041 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-17 15:44:40] 2025-10-17 19:44:08,346 | INFO     | --- collectZombieJob: --- 10, [19898]
[2025-10-17 15:44:40] 2025-10-17 19:44:08,346 | INFO     | zombie collector waiting for pid 19898
[2025-10-17 15:44:40] 2025-10-17 19:44:08,346 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-17 15:44:40] 2025-10-17 19:44:08,346 | INFO     | collected zombie processes
[2025-10-17 15:44:40] 2025-10-17 19:44:08,346 | INFO     | will attempt to kill all subprocesses of pid=19898
[2025-10-17 15:44:40] 2025-10-17 19:44:08,434 | INFO     | process IDs to be killed: [19898] (in reverse order)
[2025-10-17 15:44:40] 2025-10-17 19:44:08,489 | WARNING  | found no corresponding commands to process id(s)
[2025-10-17 15:44:40] 2025-10-17 19:44:08,490 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-17 15:44:40] 2025-10-17 19:44:08,494 | INFO     | did not find any defunct processes belonging to 19898
[2025-10-17 15:44:40] 2025-10-17 19:44:08,497 | INFO     | did not find any defunct processes belonging to 19898
[2025-10-17 15:44:40] 2025-10-17 19:44:08,498 | INFO     | ready for new job
[2025-10-17 15:44:40] 2025-10-17 19:44:08,498 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-17 15:44:40] 2025-10-17 19:44:08,500 | INFO     | ***************************************
[2025-10-17 15:44:40] 2025-10-17 19:44:08,500 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-17 15:44:40] 2025-10-17 19:44:08,500 | INFO     | ***************************************
[2025-10-17 15:44:40] 2025-10-17 19:44:08,500 | INFO     | 
[2025-10-17 15:44:40] 2025-10-17 19:44:08,500 | INFO     | architecture information:
[2025-10-17 15:44:40] 2025-10-17 19:44:08,501 | INFO     | executing command: cat /etc/os-release
[2025-10-17 15:44:40] 2025-10-17 19:44:08,519 | INFO     | cat /etc/os-release:
[2025-10-17 15:44:40] NAME="CentOS Linux"
[2025-10-17 15:44:40] VERSION="7 (Core)"
[2025-10-17 15:44:40] ID="centos"
[2025-10-17 15:44:40] ID_LIKE="rhel fedora"
[2025-10-17 15:44:40] VERSION_ID="7"
[2025-10-17 15:44:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-17 15:44:40] ANSI_COLOR="0;31"
[2025-10-17 15:44:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-17 15:44:40] HOME_URL="https://www.centos.org/"
[2025-10-17 15:44:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-17 15:44:40] 
[2025-10-17 15:44:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-17 15:44:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-17 15:44:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-17 15:44:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-17 15:44:40] 
[2025-10-17 15:44:40] 2025-10-17 19:44:08,520 | INFO     | ***************************************
[2025-10-17 15:44:40] 2025-10-17 19:44:09,023 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-17 15:44:40] 2025-10-17 19:44:09,042 | INFO     | sufficient remaining disk space (18526240768 B)
[2025-10-17 15:44:40] 2025-10-17 19:44:09,043 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-17 15:44:40] 2025-10-17 19:44:09,043 | INFO     | current server update state: UPDATING_FINAL
[2025-10-17 15:44:40] 2025-10-17 19:44:09,044 | INFO     | update_server=False
[2025-10-17 15:44:40] 2025-10-17 19:44:09,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-17 15:44:40] 2025-10-17 19:44:09,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-17 15:44:40] 2025-10-17 19:44:09,118 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-17 15:44:40] 2025-10-17 19:44:09,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-17 15:44:40] 2025-10-17 19:44:09,476 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-17 15:44:40] 2025-10-17 19:44:09,477 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-17 15:44:40] 2025-10-17 19:44:09,477 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-17 15:44:40] 2025-10-17 19:44:09,477 | INFO     | will abort loop
[2025-10-17 15:44:40] 2025-10-17 19:44:09,832 | INFO     | all payload control threads have been joined
[2025-10-17 15:44:40] 2025-10-17 19:44:10,022 | INFO     | all data control threads have been joined
[2025-10-17 15:44:40] 2025-10-17 19:44:10,050 | INFO     | [job] retrieve thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:10,050 | INFO     | [job] queue monitor thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:10,417 | INFO     | all job control threads have been joined
[2025-10-17 15:44:40] 2025-10-17 19:44:10,483 | INFO     | [job] job monitor thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:10,679 | INFO     | [job] validate thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:10,837 | INFO     | [payload] control thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:10,900 | INFO     | [payload] validate_post thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:10,965 | INFO     | [payload] failed_post thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:10,979 | INFO     | [data] copytool_in thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:11,031 | INFO     | [data] control thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:11,050 | INFO     | [job] create_data_payload thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:11,176 | INFO     | [data] copytool_out thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:11,298 | INFO     | [payload] execute_payloads thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:11,422 | INFO     | [job] control thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:11,547 | INFO     | [payload] validate_pre thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:11,548 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:13,119 | INFO     | [data] queue_monitor thread has finished
[2025-10-17 15:44:40] 2025-10-17 19:44:32,102 | INFO     | [monitor] cgroup control has ended
[2025-10-17 15:44:40] 2025-10-17 19:44:32,515 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140494433883968)>', '<ExcThread(monitor, started 140493857998592)>']
[2025-10-17 15:44:40] 2025-10-17 19:44:37,520 | INFO     | all workflow threads have been joined
[2025-10-17 15:44:40] 2025-10-17 19:44:37,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-17 15:44:40] 2025-10-17 19:44:37,522 | INFO     | traces error code: 0
[2025-10-17 15:44:40] 2025-10-17 19:44:37,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-17 15:44:40] 2025-10-17 19:44:39,905 | INFO     | PID=13041 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-17 15:44:40] 2025-10-17 19:44:39,907 | INFO     | found 0 job(s) in 20 queues
[2025-10-17 15:44:40] 2025-10-17 19:44:39,907 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-17 15:44:40] 2025-10-17 19:44:39,907 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-17 15:44:40] 2025-10-17 19:44:39,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-17 15:44:40] 2025-10-17 19:44:39,907 | CRITICAL | thread 'MainThread' is not alive
[2025-10-17 15:44:40] 2025-10-17 19:44:39,908 | INFO     | [monitor] control thread has ended
[2025-10-17 15:44:40] 2025-10-17 19:44:40,041 [wrapper] ==== pilot stdout END ====
[2025-10-17 15:44:40] 2025-10-17 19:44:40,046 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-17 15:44:40] 2025-10-17 19:44:40,051 [wrapper] pilotpid: 13041
[2025-10-17 15:44:40] 2025-10-17 19:44:40,055 [wrapper] Pilot exit status: 0
[2025-10-17 15:44:40] 2025-10-17 19:44:40,074 [wrapper] pandaids: 6847351931 6847351931
[2025-10-17 15:44:40] 2025-10-17 19:44:40,127 [wrapper] cleanup supervisor_pilot 15210 13042
[2025-10-17 15:44:40] 2025-10-17 19:44:40,131 [wrapper] Test setup, not cleaning
[2025-10-17 15:44:40] 2025-10-17 19:44:40,136 [wrapper] apfmon messages muted
[2025-10-17 15:44:40] 2025-10-17 19:44:40,141 [wrapper] ==== wrapper stdout END ====
[2025-10-17 15:44:40] 2025-10-17 19:44:40,145 [wrapper] ==== wrapper stderr END ====
[2025-10-17 15:44:40]  *** Error codes and diagnostics ***
[2025-10-17 15:44:40]     "exeErrorCode": 0,
[2025-10-17 15:44:40]     "exeErrorDiag": "",
[2025-10-17 15:44:40]     "pilotErrorCode": 0,
[2025-10-17 15:44:40]     "pilotErrorDiag": "",
[2025-10-17 15:44:40]  *** Listing of results directory ***
[2025-10-17 15:44:40] total 654752
[2025-10-17 15:44:40] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas    557409 Oct 17 04:04 pilot3.tar.gz
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas      5112 Oct 17 04:26 queuedata.json
[2025-10-17 15:44:40] -rwx------ 1 boincer umatlas     36292 Oct 17 04:27 runpilot2-wrapper.sh
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas       100 Oct 17 12:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-17 15:44:40] -rwxr-xr-x 1 boincer umatlas      7986 Oct 17 12:41 run_atlas
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas       105 Oct 17 12:41 job.xml
[2025-10-17 15:44:40] -rw-r--r-- 3 boincer umatlas 230448434 Oct 17 12:41 EVNT.46771634._001107.pool.root.1
[2025-10-17 15:44:40] -rw-r--r-- 3 boincer umatlas 230448434 Oct 17 12:41 ATLAS.root_0
[2025-10-17 15:44:40] -rw-r--r-- 2 boincer umatlas     15120 Oct 17 12:41 start_atlas.sh
[2025-10-17 15:44:40] drwxrwx--x 2 boincer umatlas      4096 Oct 17 12:41 shared
[2025-10-17 15:44:40] -rw-r--r-- 2 boincer umatlas    569677 Oct 17 12:41 input.tar.gz
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas         0 Oct 17 12:41 boinc_lockfile
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas      2557 Oct 17 13:28 pandaJob.out
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas    976733 Oct 17 13:28 agis_schedconf.cvmfs.json
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas      5909 Oct 17 15:36 init_data.xml
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas 202612890 Oct 17 15:43 HITS.46771637._022715.pool.root.1
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas       530 Oct 17 15:43 boinc_task_state.xml
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas      1049 Oct 17 15:43 memory_monitor_summary.json
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas   1560740 Oct 17 15:43 agis_ddmendpoints.agis.ALL.json
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas    386831 Oct 17 15:43 log.46771637._022715.job.log.tgz.1
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas      7850 Oct 17 15:44 heartbeat.json
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas        28 Oct 17 15:44 wrapper_checkpoint.txt
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas      8192 Oct 17 15:44 boinc_mmap_file
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas        96 Oct 17 15:44 pilot_heartbeat.json
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas       815 Oct 17 15:44 pilotlog.txt
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas   1141965 Oct 17 15:44 log.46771637._022715.job.log.1
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas       357 Oct 17 15:44 output.list
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas       620 Oct 17 15:44 runtime_log
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas   1546240 Oct 17 15:44 result.tar.gz
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas       785 Oct 17 15:44 x0KLDmWzuT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm19sNDmiMAX0n.diag
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas      8788 Oct 17 15:44 runtime_log.err
[2025-10-17 15:44:40] -rw-r--r-- 1 boincer umatlas     23271 Oct 17 15:44 stderr.txt
[2025-10-17 15:44:40] HITS file was successfully produced:
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas 202612890 Oct 17 15:43 shared/HITS.pool.root.1
[2025-10-17 15:44:40]  *** Contents of shared directory: ***
[2025-10-17 15:44:40] total 425008
[2025-10-17 15:44:40] -rw-r--r-- 3 boincer umatlas 230448434 Oct 17 12:41 ATLAS.root_0
[2025-10-17 15:44:40] -rw-r--r-- 2 boincer umatlas     15120 Oct 17 12:41 start_atlas.sh
[2025-10-17 15:44:40] -rw-r--r-- 2 boincer umatlas    569677 Oct 17 12:41 input.tar.gz
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas 202612890 Oct 17 15:43 HITS.pool.root.1
[2025-10-17 15:44:40] -rw------- 1 boincer umatlas   1546240 Oct 17 15:44 result.tar.gz
15:44:42 (8833): run_atlas exited; CPU time 60188.776885
15:44:42 (8833): called boinc_finish(0)

</stderr_txt>
]]>

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