Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
18:01:08 (1391705): wrapper (7.7.26015): starting
18:01:08 (1391705): wrapper: running run_atlas (--nthreads 12)
[2025-10-17 18:01:08] Arguments: --nthreads 12
[2025-10-17 18:01:08] Threads: 12
[2025-10-17 18:01:08] Checking for CVMFS
[2025-10-17 18:01:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 18:01:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 18:01:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 18:01:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 18:01:09] 2.13.2.0 1349836 30 43844 151823 1 188 3011420 4096000 94 130560 0 116532 99.999 1295 499 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-17 18:01:09] CVMFS is ok
[2025-10-17 18:01:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-17 18:01:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-17 18:01:09] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-17 18:01:09] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-17 18:01:09] Further information can be found at the LHC@home message board.
[2025-10-17 18:01:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 18:01:09] Checking for apptainer binary...
[2025-10-17 18:01:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 18:01:09] Running /usr/bin/apptainer --version
[2025-10-17 18:01:09] apptainer version 1.4.3
[2025-10-17 18:01:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 18:01:09] test-run
[2025-10-17 18:01:09] apptainer works
[2025-10-17 18:01:09] Set ATHENA_PROC_NUMBER=12
[2025-10-17 18:01:09] Set ATHENA_CORE_NUMBER=12
[2025-10-17 18:01:09] Starting ATLAS job with PandaID=6848204942
[2025-10-17 18:01:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-17 18:29:21]  *** The last 200 lines of the pilot log: ***
[2025-10-17 18:29:21]  storage_token=
[2025-10-17 18:29:21]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6848204942/log.46808926._002974.job.log.tgz.1
[2025-10-17 18:29:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/53/log.46808926._002974.job.log.tgz.1
[2025-10-17 18:29:21]  workdir=None
[2025-10-17 18:29:21] ]
[2025-10-17 18:29:21] 2025-10-17 18:28:07,100 | INFO     | transferring file log.46808926._002974.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6848204942/log.46808926._002974.job.log.tgz.1 to /var/lib/boinc
[2025-10-17 18:29:21] 2025-10-17 18:28:07,100 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6848204942/log.46808926._002974.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.468089
[2025-10-17 18:29:21] 2025-10-17 18:28:07,106 | INFO     | adding to output.list: log.46808926._002974.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/53/log.46808926._002974.job.log.tg
[2025-10-17 18:29:21] 2025-10-17 18:28:07,106 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-17 18:29:21] 2025-10-17 18:28:07,106 | INFO     | summary of transferred files:
[2025-10-17 18:29:21] 2025-10-17 18:28:07,106 | INFO     |  -- lfn=log.46808926._002974.job.log.tgz.1, status_code=0, status=transferred
[2025-10-17 18:29:21] 2025-10-17 18:28:07,106 | INFO     | stage-out finished correctly
[2025-10-17 18:29:21] 2025-10-17 18:28:07,158 | INFO     | PID=1395559 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-17 18:29:21] 2025-10-17 18:28:07,158 | INFO     | .. there are 2 such processes running
[2025-10-17 18:29:21] 2025-10-17 18:28:08,158 | INFO     | time since job start (1614s) is within the limit (172800.0s)
[2025-10-17 18:29:21] 2025-10-17 18:28:08,247 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-17 18:29:21] 2025-10-17 18:28:08,629 | INFO     | monitor loop #127: job 0:6848204942 is in state 'finished'
[2025-10-17 18:29:21] 2025-10-17 18:28:08,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 18:29:21] 2025-10-17 18:28:10,164 | INFO     | time since job start (1616s) is within the limit (172800.0s)
[2025-10-17 18:29:21] 2025-10-17 18:28:10,419 | INFO     | job 6848204942 has state=finished
[2025-10-17 18:29:21] 2025-10-17 18:28:10,419 | INFO     | preparing for final server update for job 6848204942 in state='finished'
[2025-10-17 18:29:21] 2025-10-17 18:28:10,419 | INFO     | this job has now completed (state=finished)
[2025-10-17 18:29:21] 2025-10-17 18:28:10,419 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-17 18:29:21] 2025-10-17 18:28:10,419 | INFO     | log transfer has been attempted: DONE
[2025-10-17 18:29:21] 2025-10-17 18:28:10,419 | INFO     | job 6848204942 has finished - writing final server update
[2025-10-17 18:29:21] 2025-10-17 18:28:10,419 | INFO     | total number of processed events: 400 (read)
[2025-10-17 18:29:21] 2025-10-17 18:28:10,420 | INFO     | executing command: lscpu
[2025-10-17 18:29:21] 2025-10-17 18:28:10,428 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-17 18:29:21] 2025-10-17 18:28:11,132 | INFO     | monitor loop #128: job 0:6848204942 is in state 'finished'
[2025-10-17 18:29:21] 2025-10-17 18:28:11,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 18:29:21] 2025-10-17 18:28:12,169 | INFO     | time since job start (1618s) is within the limit (172800.0s)
[2025-10-17 18:29:21] 2025-10-17 18:28:13,635 | INFO     | monitor loop #129: job 0:6848204942 is in state 'finished'
[2025-10-17 18:29:21] 2025-10-17 18:28:13,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 18:29:21] 2025-10-17 18:28:14,175 | INFO     | time since job start (1620s) is within the limit (172800.0s)
[2025-10-17 18:29:21] 2025-10-17 18:28:14,983 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-17 18:29:21] 2025-10-17 18:28:14,984 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.971999999998
[2025-10-17 18:29:21] 2025-10-17 18:28:14,986 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6848204942/memory_monitor_summary.json (trf name=prmon)
[2025-10-17 18:29:21] 2025-10-17 18:28:14,986 | INFO     | extracted standard info from prmon json
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | INFO     | extracted standard memory fields from prmon json
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | INFO     | fitting pss+swap vs Time
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | INFO     | sum of square deviations: 2474465.0
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | INFO     | sum of deviations: 54899451.0
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | INFO     | mean x: 1760724973.5
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | INFO     | mean y: 2696740.2
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | INFO     | -- intersect: -39061438095.87145
[2025-10-17 18:29:21] 2025-10-17 18:28:14,987 | INFO     | intersect: -39061438095.87145
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | chi2: 0.0023738310590904247
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | -- intersect: -39061438095.87145
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | current memory leak: 22.19 B/s (using 20 data points, chi2=0.00)
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | ..............................
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | . Timing measurements:
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | . get job = 0 s
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | . initial setup = 2 s
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | . payload setup = 1 s
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | . stage-in = 0 s
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | . payload execution = 1596 s
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | . stage-out = 0 s
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | . log creation = 0 s
[2025-10-17 18:29:21] 2025-10-17 18:28:14,988 | INFO     | ..............................
[2025-10-17 18:29:21] 2025-10-17 18:28:15,343 | INFO     | 
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | job summary report
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | --------------------------------------------------
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | PanDA job id: 6848204942
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | task id: 46808926
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | errors: (none)
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | pilot state: finished 
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | transexitcode: 0
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | exeerrorcode: 0
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | exeerrordiag: 
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | exitcode: 0
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | exitmsg: OK
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | cpuconsumptiontime: 15111 s
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | nevents: 400
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | neventsw: 0
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | pid: 1402207
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | pgrp: 1402207
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | corecount: 12
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | event service: False
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | sizes: {0: 2348918, 1: 2348918, 2: 2349208, 11: 2349236, 1601: 2383070, 1603: 2383070, 1609: 2383392}
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | --------------------------------------------------
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | 
[2025-10-17 18:29:21] 2025-10-17 18:28:15,344 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-17 18:29:21] 2025-10-17 18:28:15,354 | INFO     | job 6848204942 has completed (purged errors)
[2025-10-17 18:29:21] 2025-10-17 18:28:15,355 | INFO     | overall cleanup function is called
[2025-10-17 18:29:21] 2025-10-17 18:28:16,361 | INFO     | --- collectZombieJob: --- 10, [1402207]
[2025-10-17 18:29:21] 2025-10-17 18:28:16,361 | INFO     | zombie collector waiting for pid 1402207
[2025-10-17 18:29:21] 2025-10-17 18:28:16,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-17 18:29:21] 2025-10-17 18:28:16,361 | INFO     | collected zombie processes
[2025-10-17 18:29:21] 2025-10-17 18:28:16,361 | INFO     | will attempt to kill all subprocesses of pid=1402207
[2025-10-17 18:29:21] 2025-10-17 18:28:16,386 | INFO     | process IDs to be killed: [1402207] (in reverse order)
[2025-10-17 18:29:21] 2025-10-17 18:28:16,404 | WARNING  | found no corresponding commands to process id(s)
[2025-10-17 18:29:21] 2025-10-17 18:28:16,404 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-17 18:29:21] 2025-10-17 18:28:16,405 | INFO     | did not find any defunct processes belonging to 1402207
[2025-10-17 18:29:21] 2025-10-17 18:28:16,406 | INFO     | did not find any defunct processes belonging to 1402207
[2025-10-17 18:29:21] 2025-10-17 18:28:16,406 | INFO     | ready for new job
[2025-10-17 18:29:21] 2025-10-17 18:28:16,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-17 18:29:21] 2025-10-17 18:28:16,406 | INFO     | ***************************************
[2025-10-17 18:29:21] 2025-10-17 18:28:16,406 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-17 18:29:21] 2025-10-17 18:28:16,406 | INFO     | ***************************************
[2025-10-17 18:29:21] 2025-10-17 18:28:16,406 | INFO     | 
[2025-10-17 18:29:21] 2025-10-17 18:28:16,407 | INFO     | pilot is running in a VM
[2025-10-17 18:29:21] 2025-10-17 18:28:16,407 | INFO     | architecture information:
[2025-10-17 18:29:21] 2025-10-17 18:28:16,407 | INFO     | executing command: cat /etc/os-release
[2025-10-17 18:29:21] 2025-10-17 18:28:16,413 | INFO     | cat /etc/os-release:
[2025-10-17 18:29:21] NAME="CentOS Linux"
[2025-10-17 18:29:21] VERSION="7 (Core)"
[2025-10-17 18:29:21] ID="centos"
[2025-10-17 18:29:21] ID_LIKE="rhel fedora"
[2025-10-17 18:29:21] VERSION_ID="7"
[2025-10-17 18:29:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-17 18:29:21] ANSI_COLOR="0;31"
[2025-10-17 18:29:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-17 18:29:21] HOME_URL="https://www.centos.org/"
[2025-10-17 18:29:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-17 18:29:21] 
[2025-10-17 18:29:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-17 18:29:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-17 18:29:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-17 18:29:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-17 18:29:21] 
[2025-10-17 18:29:21] 2025-10-17 18:28:16,413 | INFO     | ***************************************
[2025-10-17 18:29:21] 2025-10-17 18:28:16,916 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-17 18:29:21] 2025-10-17 18:28:16,924 | INFO     | sufficient remaining disk space (24386732032 B)
[2025-10-17 18:29:21] 2025-10-17 18:28:16,924 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-17 18:29:21] 2025-10-17 18:28:16,924 | INFO     | current server update state: UPDATING_FINAL
[2025-10-17 18:29:21] 2025-10-17 18:28:16,924 | INFO     | update_server=False
[2025-10-17 18:29:21] 2025-10-17 18:28:16,924 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-17 18:29:21] 2025-10-17 18:28:16,924 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-17 18:29:21] 2025-10-17 18:28:16,967 | INFO     | all job control threads have been joined
[2025-10-17 18:29:21] 2025-10-17 18:28:17,128 | INFO     | all data control threads have been joined
[2025-10-17 18:29:21] 2025-10-17 18:28:17,143 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-17 18:29:21] 2025-10-17 18:28:17,143 | INFO     | aborting loop
[2025-10-17 18:29:21] 2025-10-17 18:28:17,643 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-17 18:29:21] 2025-10-17 18:28:17,929 | INFO     | [job] retrieve thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:17,929 | INFO     | [job] queue monitor thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:17,972 | INFO     | [job] control thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:18,081 | INFO     | [payload] execute_payloads thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:18,133 | INFO     | [data] control thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:18,149 | INFO     | [job] job monitor thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:18,407 | INFO     | all payload control threads have been joined
[2025-10-17 18:29:21] 2025-10-17 18:28:18,632 | INFO     | [payload] failed_post thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:18,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-17 18:29:21] 2025-10-17 18:28:19,035 | INFO     | [data] copytool_in thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:19,131 | INFO     | [payload] validate_post thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:19,322 | INFO     | [job] validate thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:19,377 | INFO     | [payload] validate_pre thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:19,412 | INFO     | [payload] control thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:19,421 | INFO     | [job] create_data_payload thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:19,648 | INFO     | [data] copytool_out thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:22,791 | INFO     | [data] queue_monitor thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:27,327 | INFO     | job.realtimelogging is not enabled
[2025-10-17 18:29:21] 2025-10-17 18:28:28,332 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-17 18:29:21] 2025-10-17 18:28:47,271 | INFO     | PID=1395559 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-17 18:29:21] 2025-10-17 18:28:47,271 | INFO     | .. there are 2 such processes running
[2025-10-17 18:29:21] 2025-10-17 18:28:47,271 | INFO     | found 0 job(s) in 20 queues
[2025-10-17 18:29:21] 2025-10-17 18:28:47,271 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-17 18:29:21] 2025-10-17 18:28:47,271 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-17 18:29:21] 2025-10-17 18:29:16,084 | INFO     | [monitor] cgroup control has ended
[2025-10-17 18:29:21] 2025-10-17 18:29:16,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135617805109056)>', '<ExcThread(monitor, started 135617300109056)>']
[2025-10-17 18:29:21] 2025-10-17 18:29:17,402 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-17 18:29:21] 2025-10-17 18:29:17,403 | INFO     | [monitor] control thread has ended
[2025-10-17 18:29:21] 2025-10-17 18:29:21,638 | INFO     | all workflow threads have been joined
[2025-10-17 18:29:21] 2025-10-17 18:29:21,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-17 18:29:21] 2025-10-17 18:29:21,638 | INFO     | traces error code: 0
[2025-10-17 18:29:21] 2025-10-17 18:29:21,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-17 18:29:21] 2025-10-17 18:29:21,679 [wrapper] ==== pilot stdout END ====
[2025-10-17 18:29:21] 2025-10-17 18:29:21,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-17 18:29:21] 2025-10-17 18:29:21,681 [wrapper] pilotpid: 1395559
[2025-10-17 18:29:21] 2025-10-17 18:29:21,682 [wrapper] Pilot exit status: 0
[2025-10-17 18:29:21] 2025-10-17 18:29:21,686 [wrapper] pandaids: 6848204942
[2025-10-17 18:29:21] 2025-10-17 18:29:21,694 [wrapper] cleanup supervisor_pilot 1426462 1395560
[2025-10-17 18:29:21] 2025-10-17 18:29:21,694 [wrapper] Test setup, not cleaning
[2025-10-17 18:29:21] 2025-10-17 18:29:21,695 [wrapper] apfmon messages muted
[2025-10-17 18:29:21] 2025-10-17 18:29:21,696 [wrapper] ==== wrapper stdout END ====
[2025-10-17 18:29:21] 2025-10-17 18:29:21,697 [wrapper] ==== wrapper stderr END ====
[2025-10-17 18:29:21]  *** Error codes and diagnostics ***
[2025-10-17 18:29:21]     "exeErrorCode": 0,
[2025-10-17 18:29:21]     "exeErrorDiag": "",
[2025-10-17 18:29:21]     "pilotErrorCode": 0,
[2025-10-17 18:29:21]     "pilotErrorDiag": "",
[2025-10-17 18:29:21]  *** Listing of results directory ***
[2025-10-17 18:29:21] total 428992
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc    557409 Oct 17 04:36 pilot3.tar.gz
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc      5112 Oct 17 04:47 queuedata.json
[2025-10-17 18:29:21] -rwx------ 1 boinc boinc     36292 Oct 17 04:48 runpilot2-wrapper.sh
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc       100 Oct 17 18:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-17 18:29:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 17 18:01 run_atlas
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc       105 Oct 17 18:01 job.xml
[2025-10-17 18:29:21] -rw-r--r-- 2 boinc boinc     15120 Oct 17 18:01 start_atlas.sh
[2025-10-17 18:29:21] drwxrwx--x 2 boinc boinc      4096 Oct 17 18:01 shared
[2025-10-17 18:29:21] -rw-r--r-- 2 boinc boinc    569675 Oct 17 18:01 input.tar.gz
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc      6938 Oct 17 18:01 init_data.xml
[2025-10-17 18:29:21] -rw-r--r-- 2 boinc boinc 226295897 Oct 17 18:01 EVNT.46808924._000089.pool.root.1
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc         0 Oct 17 18:01 boinc_lockfile
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc      2544 Oct 17 18:01 pandaJob.out
[2025-10-17 18:29:21] -rw------- 1 boinc boinc    976733 Oct 17 18:01 agis_schedconf.cvmfs.json
[2025-10-17 18:29:21] -rw------- 1 boinc boinc   1560740 Oct 17 18:01 agis_ddmendpoints.agis.ALL.json
[2025-10-17 18:29:21] drwx------ 5 boinc boinc      4096 Oct 17 18:01 pilot3
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc       529 Oct 17 18:27 boinc_task_state.xml
[2025-10-17 18:29:21] -rw------- 1 boinc boinc 207812609 Oct 17 18:27 HITS.46808926._002974.pool.root.1
[2025-10-17 18:29:21] -rw------- 1 boinc boinc      1022 Oct 17 18:28 memory_monitor_summary.json
[2025-10-17 18:29:21] -rw------- 1 boinc boinc    355643 Oct 17 18:28 log.46808926._002974.job.log.tgz.1
[2025-10-17 18:29:21] -rw------- 1 boinc boinc      7733 Oct 17 18:28 heartbeat.json
[2025-10-17 18:29:21] -rw------- 1 boinc boinc        95 Oct 17 18:28 pilot_heartbeat.json
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc      8192 Oct 17 18:29 boinc_mmap_file
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc        27 Oct 17 18:29 wrapper_checkpoint.txt
[2025-10-17 18:29:21] -rw------- 1 boinc boinc      4964 Oct 17 18:29 pilotlog.txt
[2025-10-17 18:29:21] -rw------- 1 boinc boinc    280422 Oct 17 18:29 log.46808926._002974.job.log.1
[2025-10-17 18:29:21] -rw------- 1 boinc boinc       357 Oct 17 18:29 output.list
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc       620 Oct 17 18:29 runtime_log
[2025-10-17 18:29:21] -rw------- 1 boinc boinc    655360 Oct 17 18:29 result.tar.gz
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc      8762 Oct 17 18:29 runtime_log.err
[2025-10-17 18:29:21] -rw------- 1 boinc boinc       641 Oct 17 18:29 p7vKDmTZrT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWlsNDm73Ns1m.diag
[2025-10-17 18:29:21] -rw-r--r-- 1 boinc boinc     22378 Oct 17 18:29 stderr.txt
[2025-10-17 18:29:21] HITS file was successfully produced:
[2025-10-17 18:29:21] -rw------- 1 boinc boinc 207812609 Oct 17 18:27 shared/HITS.pool.root.1
[2025-10-17 18:29:21]  *** Contents of shared directory: ***
[2025-10-17 18:29:21] total 425164
[2025-10-17 18:29:21] -rw-r--r-- 2 boinc boinc     15120 Oct 17 18:01 start_atlas.sh
[2025-10-17 18:29:21] -rw-r--r-- 2 boinc boinc    569675 Oct 17 18:01 input.tar.gz
[2025-10-17 18:29:21] -rw-r--r-- 2 boinc boinc 226295897 Oct 17 18:01 ATLAS.root_0
[2025-10-17 18:29:21] -rw------- 1 boinc boinc 207812609 Oct 17 18:27 HITS.pool.root.1
[2025-10-17 18:29:21] -rw------- 1 boinc boinc    655360 Oct 17 18:29 result.tar.gz
18:29:23 (1391705): run_atlas exited; CPU time 15117.300943
18:29:23 (1391705): called boinc_finish(0)

</stderr_txt>
]]>

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