Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
16:14:37 (6542): wrapper (7.7.26015): starting
16:14:37 (6542): wrapper: running run_atlas (--nthreads 8)
[2025-10-17 16:14:37] Arguments: --nthreads 8
[2025-10-17 16:14:37] Threads: 8
[2025-10-17 16:14:37] Checking for CVMFS
[2025-10-17 16:14:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 16:14:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 16:14:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 16:14:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 16:14:38] 2.11.0.0 5278 7787 62100 151818 4 1 3202602 4096000 0 130560 0 1037545 99.347 905999 757 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-17 16:14:38] CVMFS is ok
[2025-10-17 16:14:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-17 16:14:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-17 16:14:38] Further information can be found at the LHC@home message board.
[2025-10-17 16:14:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 16:14:38] Checking for apptainer binary...
[2025-10-17 16:14:38] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-17 16:14:38] apptainer is not installed, using version from CVMFS
[2025-10-17 16:14:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 16:14:39] WARNING: Environment variable TMPDIR already has value [/tmp/job_10668279/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node121
[2025-10-17 16:14:39] apptainer works
[2025-10-17 16:14:39] Set ATHENA_PROC_NUMBER=8
[2025-10-17 16:14:39] Set ATHENA_CORE_NUMBER=8
[2025-10-17 16:14:39] Starting ATLAS job with PandaID=6848204750
[2025-10-17 16:14:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10668279/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-17 17:17:57]  *** The last 200 lines of the pilot log: ***
[2025-10-17 17:17:57]  protocol_id=None
[2025-10-17 17:17:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-17 17:17:57]  replicas=None
[2025-10-17 17:17:57]  scope=mc23_13p6TeV
[2025-10-17 17:17:57]  status=None
[2025-10-17 17:17:57]  status_code=0
[2025-10-17 17:17:57]  storage_token=
[2025-10-17 17:17:57]  surl=/tmp/job_10668279/atlas/pilot/slots/0/PanDA_Pilot-6848204750/log.46808926._002794.job.log.tgz.1
[2025-10-17 17:17:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/9d/log.46808926._002794.job.log.tgz.1
[2025-10-17 17:17:57]  workdir=None
[2025-10-17 17:17:57] ]
[2025-10-17 17:17:57] 2025-10-17 15:17:03,384 | INFO     | transferring file log.46808926._002794.job.log.tgz.1 from /tmp/job_10668279/atlas/pilot/slots/0/PanDA_Pilot-6848204750/log.46808926._002794.job.log.tgz.1 to /tmp/j
[2025-10-17 17:17:57] 2025-10-17 15:17:03,385 | INFO     | executing command: /usr/bin/env mv /tmp/job_10668279/atlas/pilot/slots/0/PanDA_Pilot-6848204750/log.46808926._002794.job.log.tgz.1 /tmp/job_10668279/atlas/pilot/sl
[2025-10-17 17:17:57] 2025-10-17 15:17:03,393 | INFO     | adding to output.list: log.46808926._002794.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/9d/log.46808926._002794.job.log.tg
[2025-10-17 17:17:57] 2025-10-17 15:17:03,394 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-17 17:17:57] 2025-10-17 15:17:03,394 | INFO     | summary of transferred files:
[2025-10-17 17:17:57] 2025-10-17 15:17:03,394 | INFO     |  -- lfn=log.46808926._002794.job.log.tgz.1, status_code=0, status=transferred
[2025-10-17 17:17:57] 2025-10-17 15:17:03,394 | INFO     | stage-out finished correctly
[2025-10-17 17:17:57] 2025-10-17 15:17:04,092 | INFO     | monitor loop #272: job 0:6848204750 is in state 'finished'
[2025-10-17 17:17:57] 2025-10-17 15:17:04,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 17:17:57] 2025-10-17 15:17:05,008 | INFO     | time since job start (3740s) is within the limit (172800.0s)
[2025-10-17 17:17:57] 2025-10-17 15:17:05,346 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-17 17:17:57] 2025-10-17 15:17:05,731 | INFO     | job 6848204750 has state=finished
[2025-10-17 17:17:57] 2025-10-17 15:17:05,731 | INFO     | preparing for final server update for job 6848204750 in state='finished'
[2025-10-17 17:17:57] 2025-10-17 15:17:05,732 | INFO     | this job has now completed (state=finished)
[2025-10-17 17:17:57] 2025-10-17 15:17:05,732 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-17 17:17:57] 2025-10-17 15:17:05,732 | INFO     | log transfer has been attempted: DONE
[2025-10-17 17:17:57] 2025-10-17 15:17:05,732 | INFO     | job 6848204750 has finished - writing final server update
[2025-10-17 17:17:57] 2025-10-17 15:17:05,732 | INFO     | total number of processed events: 400 (read)
[2025-10-17 17:17:57] 2025-10-17 15:17:05,732 | INFO     | executing command: lscpu
[2025-10-17 17:17:57] 2025-10-17 15:17:05,774 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-17 17:17:57] 2025-10-17 15:17:06,595 | INFO     | monitor loop #273: job 0:6848204750 is in state 'finished'
[2025-10-17 17:17:57] 2025-10-17 15:17:06,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 17:17:57] 2025-10-17 15:17:07,013 | INFO     | time since job start (3742s) is within the limit (172800.0s)
[2025-10-17 17:17:57] 2025-10-17 15:17:07,836 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-17 17:17:57] 2025-10-17 15:17:07,856 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2448.2985312500005
[2025-10-17 17:17:57] 2025-10-17 15:17:07,867 | INFO     | using path: /tmp/job_10668279/atlas/pilot/slots/0/PanDA_Pilot-6848204750/memory_monitor_summary.json (trf name=prmon)
[2025-10-17 17:17:57] 2025-10-17 15:17:07,867 | INFO     | extracted standard info from prmon json
[2025-10-17 17:17:57] 2025-10-17 15:17:07,867 | INFO     | extracted standard memory fields from prmon json
[2025-10-17 17:17:57] 2025-10-17 15:17:07,867 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-17 17:17:57] 2025-10-17 15:17:07,868 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-17 17:17:57] 2025-10-17 15:17:07,868 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-17 17:17:57] 2025-10-17 15:17:07,868 | INFO     | fitting pss+swap vs Time
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | sum of square deviations: 48810217.5
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | sum of deviations: 694688252.0000001
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | mean x: 1760712425.5
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | mean y: 2564931.3703703703
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | -- intersect: -25056660365.982086
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | intersect: -25056660365.982086
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | chi2: 0.0002473198147848631
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | -- intersect: -25056660365.982086
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | current memory leak: 14.23 B/s (using 54 data points, chi2=0.00)
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | could have reported an average CPU frequency of 2430 MHz (6 samples)
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | ..............................
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | . Timing measurements:
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | . get job = 0 s
[2025-10-17 17:17:57] 2025-10-17 15:17:07,869 | INFO     | . initial setup = 1 s
[2025-10-17 17:17:57] 2025-10-17 15:17:07,870 | INFO     | . payload setup = 2 s
[2025-10-17 17:17:57] 2025-10-17 15:17:07,870 | INFO     | . stage-in = 0 s
[2025-10-17 17:17:57] 2025-10-17 15:17:07,870 | INFO     | . payload execution = 3717 s
[2025-10-17 17:17:57] 2025-10-17 15:17:07,870 | INFO     | . stage-out = 0 s
[2025-10-17 17:17:57] 2025-10-17 15:17:07,870 | INFO     | . log creation = 0 s
[2025-10-17 17:17:57] 2025-10-17 15:17:07,870 | INFO     | ..............................
[2025-10-17 17:17:57] 2025-10-17 15:17:08,090 | INFO     | 
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | job summary report
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | --------------------------------------------------
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | PanDA job id: 6848204750
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | task id: 46808926
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | errors: (none)
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | pilot state: finished 
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | transexitcode: 0
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | exeerrorcode: 0
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | exeerrordiag: 
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | exitcode: 0
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | exitmsg: OK
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | cpuconsumptiontime: 27337 s
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | nevents: 400
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | neventsw: 0
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | pid: 31013
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | pgrp: 31013
[2025-10-17 17:17:57] 2025-10-17 15:17:08,091 | INFO     | corecount: 8
[2025-10-17 17:17:57] 2025-10-17 15:17:08,092 | INFO     | event service: False
[2025-10-17 17:17:57] 2025-10-17 15:17:08,092 | INFO     | sizes: {0: 2348754, 1: 2349064, 3: 2349326, 11: 2349354, 3724: 2375223, 3725: 2384251, 3727: 2384435, 3730: 2384629}
[2025-10-17 17:17:57] 2025-10-17 15:17:08,092 | INFO     | --------------------------------------------------
[2025-10-17 17:17:57] 2025-10-17 15:17:08,092 | INFO     | 
[2025-10-17 17:17:57] 2025-10-17 15:17:08,092 | INFO     | executing command: ls -lF /tmp/job_10668279/atlas/pilot/slots/0
[2025-10-17 17:17:57] 2025-10-17 15:17:08,102 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-17 17:17:57] 2025-10-17 15:17:08,103 | INFO     | job 6848204750 has completed (purged errors)
[2025-10-17 17:17:57] 2025-10-17 15:17:08,104 | INFO     | overall cleanup function is called
[2025-10-17 17:17:57] 2025-10-17 15:17:08,250 | INFO     | PID=11570 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-17 17:17:57] 2025-10-17 15:17:08,250 | INFO     | .. there are 6 such processes running
[2025-10-17 17:17:57] 2025-10-17 15:17:09,110 | INFO     | --- collectZombieJob: --- 10, [31013]
[2025-10-17 17:17:57] 2025-10-17 15:17:09,110 | INFO     | zombie collector waiting for pid 31013
[2025-10-17 17:17:57] 2025-10-17 15:17:09,110 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-17 17:17:57] 2025-10-17 15:17:09,110 | INFO     | collected zombie processes
[2025-10-17 17:17:57] 2025-10-17 15:17:09,110 | INFO     | will attempt to kill all subprocesses of pid=31013
[2025-10-17 17:17:57] 2025-10-17 15:17:09,287 | INFO     | process IDs to be killed: [31013] (in reverse order)
[2025-10-17 17:17:57] 2025-10-17 15:17:09,340 | WARNING  | found no corresponding commands to process id(s)
[2025-10-17 17:17:57] 2025-10-17 15:17:09,340 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-17 17:17:57] 2025-10-17 15:17:09,346 | INFO     | did not find any defunct processes belonging to 31013
[2025-10-17 17:17:57] 2025-10-17 15:17:09,352 | INFO     | did not find any defunct processes belonging to 31013
[2025-10-17 17:17:57] 2025-10-17 15:17:09,352 | INFO     | ready for new job
[2025-10-17 17:17:57] 2025-10-17 15:17:09,352 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-17 17:17:57] 2025-10-17 15:17:09,353 | INFO     | ***************************************
[2025-10-17 17:17:57] 2025-10-17 15:17:09,353 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-17 17:17:57] 2025-10-17 15:17:09,353 | INFO     | ***************************************
[2025-10-17 17:17:57] 2025-10-17 15:17:09,353 | INFO     | 
[2025-10-17 17:17:57] 2025-10-17 15:17:09,368 | INFO     | architecture information:
[2025-10-17 17:17:57] 2025-10-17 15:17:09,369 | INFO     | executing command: cat /etc/os-release
[2025-10-17 17:17:57] 2025-10-17 15:17:09,376 | INFO     | cat /etc/os-release:
[2025-10-17 17:17:57] NAME="CentOS Linux"
[2025-10-17 17:17:57] VERSION="7 (Core)"
[2025-10-17 17:17:57] ID="centos"
[2025-10-17 17:17:57] ID_LIKE="rhel fedora"
[2025-10-17 17:17:57] VERSION_ID="7"
[2025-10-17 17:17:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-17 17:17:57] ANSI_COLOR="0;31"
[2025-10-17 17:17:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-17 17:17:57] HOME_URL="https://www.centos.org/"
[2025-10-17 17:17:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-17 17:17:57] 
[2025-10-17 17:17:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-17 17:17:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-17 17:17:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-17 17:17:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-17 17:17:57] 
[2025-10-17 17:17:57] 2025-10-17 15:17:09,376 | INFO     | ***************************************
[2025-10-17 17:17:57] 2025-10-17 15:17:09,878 | INFO     | executing command: df -mP /tmp/job_10668279/atlas/pilot/slots/0
[2025-10-17 17:17:57] 2025-10-17 15:17:09,885 | INFO     | sufficient remaining disk space (223466225664 B)
[2025-10-17 17:17:57] 2025-10-17 15:17:09,886 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-17 17:17:57] 2025-10-17 15:17:09,886 | INFO     | current server update state: UPDATING_FINAL
[2025-10-17 17:17:57] 2025-10-17 15:17:09,886 | INFO     | update_server=False
[2025-10-17 17:17:57] 2025-10-17 15:17:09,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-17 17:17:57] 2025-10-17 15:17:09,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-17 17:17:57] 2025-10-17 15:17:09,886 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-17 17:17:57] 2025-10-17 15:17:10,031 | INFO     | all payload control threads have been joined
[2025-10-17 17:17:57] 2025-10-17 15:17:10,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-17 17:17:57] 2025-10-17 15:17:10,103 | INFO     | aborting loop
[2025-10-17 17:17:57] 2025-10-17 15:17:10,538 | INFO     | all data control threads have been joined
[2025-10-17 17:17:57] 2025-10-17 15:17:10,891 | INFO     | [job] retrieve thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:10,891 | INFO     | [job] queue monitor thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:11,036 | INFO     | [payload] control thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:11,108 | INFO     | [job] job monitor thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:11,190 | INFO     | [data] copytool_in thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:11,190 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:11,407 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-17 17:17:57] 2025-10-17 15:17:11,424 | INFO     | [payload] validate_post thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:11,484 | INFO     | all job control threads have been joined
[2025-10-17 17:17:57] 2025-10-17 15:17:11,543 | INFO     | [data] control thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:11,736 | INFO     | [job] validate thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:11,756 | INFO     | [payload] failed_post thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:11,891 | INFO     | [data] copytool_out thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:12,083 | INFO     | [payload] validate_pre thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:12,107 | INFO     | [job] create_data_payload thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:12,375 | INFO     | [payload] execute_payloads thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:12,490 | INFO     | [job] control thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:15,412 | INFO     | [data] queue_monitor thread has finished
[2025-10-17 17:17:57] 2025-10-17 15:17:40,522 | INFO     | PID=11570 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-17 17:17:57] 2025-10-17 15:17:40,522 | INFO     | .. there are 4 such processes running
[2025-10-17 17:17:57] 2025-10-17 15:17:40,523 | INFO     | found 0 job(s) in 20 queues
[2025-10-17 17:17:57] 2025-10-17 15:17:40,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-17 17:17:57] 2025-10-17 15:17:40,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-17 17:17:57] 2025-10-17 15:17:51,279 | INFO     | [monitor] cgroup control has ended
[2025-10-17 17:17:57] 2025-10-17 15:17:52,284 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064669440)>']
[2025-10-17 17:17:57] 2025-10-17 15:17:52,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-17 17:17:57] 2025-10-17 15:17:52,582 | INFO     | [monitor] control thread has ended
[2025-10-17 17:17:57] 2025-10-17 15:17:57,309 | INFO     | all workflow threads have been joined
[2025-10-17 17:17:57] 2025-10-17 15:17:57,309 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-17 17:17:57] 2025-10-17 15:17:57,309 | INFO     | traces error code: 0
[2025-10-17 17:17:57] 2025-10-17 15:17:57,309 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-17 17:17:57] 2025-10-17 15:17:57,371 [wrapper] ==== pilot stdout END ====
[2025-10-17 17:17:57] 2025-10-17 15:17:57,373 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-17 17:17:57] 2025-10-17 15:17:57,374 [wrapper] pilotpid: 11570
[2025-10-17 17:17:57] 2025-10-17 15:17:57,375 [wrapper] Pilot exit status: 0
[2025-10-17 17:17:57] 2025-10-17 15:17:57,379 [wrapper] pandaids: 6848204750
[2025-10-17 17:17:57] 2025-10-17 15:17:57,412 [wrapper] cleanup supervisor_pilot 22737 11571
[2025-10-17 17:17:57] 2025-10-17 15:17:57,414 [wrapper] Test setup, not cleaning
[2025-10-17 17:17:57] 2025-10-17 15:17:57,415 [wrapper] apfmon messages muted
[2025-10-17 17:17:57] 2025-10-17 15:17:57,416 [wrapper] ==== wrapper stdout END ====
[2025-10-17 17:17:57] 2025-10-17 15:17:57,417 [wrapper] ==== wrapper stderr END ====
[2025-10-17 17:17:57]  *** Error codes and diagnostics ***
[2025-10-17 17:17:57]     "exeErrorCode": 0,
[2025-10-17 17:17:57]     "exeErrorDiag": "",
[2025-10-17 17:17:57]     "pilotErrorCode": 0,
[2025-10-17 17:17:57]     "pilotErrorDiag": "",
[2025-10-17 17:17:57]  *** Listing of results directory ***
[2025-10-17 17:17:57] total 429760
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user    557409 Oct 17 05:33 pilot3.tar.gz
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user      5112 Oct 17 06:12 queuedata.json
[2025-10-17 17:17:57] -rwx------ 1 mf493845 unix-user     36292 Oct 17 06:13 runpilot2-wrapper.sh
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user       100 Oct 17 15:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-17 17:17:57] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 17 15:17 run_atlas
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user       105 Oct 17 15:17 job.xml
[2025-10-17 17:17:57] -rw-r--r-- 2 mf493845 unix-user 224755662 Oct 17 16:14 EVNT.46808924._000082.pool.root.1
[2025-10-17 17:17:57] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 17 16:14 start_atlas.sh
[2025-10-17 17:17:57] drwxrwx--x 2 mf493845 unix-user       100 Oct 17 16:14 shared
[2025-10-17 17:17:57] -rw-r--r-- 2 mf493845 unix-user    569679 Oct 17 16:14 input.tar.gz
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user      6394 Oct 17 16:14 init_data.xml
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user         0 Oct 17 16:14 boinc_setup_complete
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user      8192 Oct 17 16:14 boinc_mmap_file
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user         0 Oct 17 16:14 boinc_lockfile
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user      2543 Oct 17 16:14 pandaJob.out
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user    976733 Oct 17 16:14 agis_schedconf.cvmfs.json
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user   1560740 Oct 17 16:14 agis_ddmendpoints.agis.ALL.json
[2025-10-17 17:17:57] drwx------ 5 mf493845 unix-user       440 Oct 17 16:14 pilot3
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user 209672991 Oct 17 17:16 HITS.46808926._002794.pool.root.1
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user      1015 Oct 17 17:16 memory_monitor_summary.json
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user    319682 Oct 17 17:17 log.46808926._002794.job.log.tgz.1
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user      7767 Oct 17 17:17 heartbeat.json
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user        95 Oct 17 17:17 pilot_heartbeat.json
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user      4835 Oct 17 17:17 pilotlog.txt
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user    567188 Oct 17 17:17 log.46808926._002794.job.log.1
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user       357 Oct 17 17:17 output.list
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user       620 Oct 17 17:17 runtime_log
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user    901120 Oct 17 17:17 result.tar.gz
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user      9076 Oct 17 17:17 runtime_log.err
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user       644 Oct 17 17:17 dHkLDm80qT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmIaZMDmFyhEkm.diag
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user     22348 Oct 17 17:17 stderr.txt
[2025-10-17 17:17:57] HITS file was successfully produced:
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user 209672991 Oct 17 17:16 shared/HITS.pool.root.1
[2025-10-17 17:17:57]  *** Contents of shared directory: ***
[2025-10-17 17:17:57] total 425704
[2025-10-17 17:17:57] -rw-r--r-- 2 mf493845 unix-user 224755662 Oct 17 16:14 ATLAS.root_0
[2025-10-17 17:17:57] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 17 16:14 start_atlas.sh
[2025-10-17 17:17:57] -rw-r--r-- 2 mf493845 unix-user    569679 Oct 17 16:14 input.tar.gz
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user 209672991 Oct 17 17:16 HITS.pool.root.1
[2025-10-17 17:17:57] -rw------- 1 mf493845 unix-user    901120 Oct 17 17:17 result.tar.gz
17:17:58 (6542): run_atlas exited; CPU time 27441.147497
17:17:58 (6542): called boinc_finish(0)

</stderr_txt>
]]>

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