Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:06:39 (12410): wrapper (7.7.26015): starting
08:06:39 (12410): wrapper: running run_atlas (--nthreads 12)
[2025-10-17 08:06:39] Arguments: --nthreads 12
[2025-10-17 08:06:39] Threads: 12
[2025-10-17 08:06:39] Checking for CVMFS
[2025-10-17 08:06:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 08:06:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 08:06:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 08:06:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 08:06:39] 2.11.2.0 723 60007 82344 151814 2 57 16041305 20275200 1 130560 0 33796602 99.960 2637734 33758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-17 08:06:39] CVMFS is ok
[2025-10-17 08:06:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-17 08:06:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-17 08:06:39] Further information can be found at the LHC@home message board.
[2025-10-17 08:06:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 08:06:39] Checking for apptainer binary...
[2025-10-17 08:06:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 08:06:39] Running /usr/bin/apptainer --version
[2025-10-17 08:06:39] apptainer version 1.3.2-1.el7
[2025-10-17 08:06:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 08:06:41] c-205-1.aglt2.org
[2025-10-17 08:06:41] apptainer works
[2025-10-17 08:06:41] Set ATHENA_PROC_NUMBER=12
[2025-10-17 08:06:41] Set ATHENA_CORE_NUMBER=12
[2025-10-17 08:06:41] Starting ATLAS job with PandaID=6847341128
[2025-10-17 08:06:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-17 09:25:26]  *** The last 200 lines of the pilot log: ***
[2025-10-17 09:25:26]  mtime=0
[2025-10-17 09:25:26]  protocol_id=None
[2025-10-17 09:25:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-17 09:25:26]  replicas=None
[2025-10-17 09:25:26]  scope=mc23_13p6TeV
[2025-10-17 09:25:26]  status=None
[2025-10-17 09:25:26]  status_code=0
[2025-10-17 09:25:26]  storage_token=
[2025-10-17 09:25:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6847341128/log.46771637._020798.job.log.tgz.1
[2025-10-17 09:25:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/6b/log.46771637._020798.job.log.tgz.1
[2025-10-17 09:25:26]  workdir=None
[2025-10-17 09:25:26] ]
[2025-10-17 09:25:26] 2025-10-17 13:24:46,260 | INFO     | transferring file log.46771637._020798.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6847341128/log.46771637._020798.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-17 09:25:26] 2025-10-17 13:24:46,261 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6847341128/log.46771637._020798.job.log.tgz.1 /tmp/boinchome/slots/0/log.46771637._020798.job
[2025-10-17 09:25:26] 2025-10-17 13:24:46,282 | INFO     | adding to output.list: log.46771637._020798.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/6b/log.46771637._020798.job.log.tg
[2025-10-17 09:25:26] 2025-10-17 13:24:46,283 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-17 09:25:26] 2025-10-17 13:24:46,283 | INFO     | summary of transferred files:
[2025-10-17 09:25:26] 2025-10-17 13:24:46,283 | INFO     |  -- lfn=log.46771637._020798.job.log.tgz.1, status_code=0, status=transferred
[2025-10-17 09:25:26] 2025-10-17 13:24:46,284 | INFO     | stage-out finished correctly
[2025-10-17 09:25:26] 2025-10-17 13:24:46,836 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-17 09:25:26] 2025-10-17 13:24:46,910 | INFO     | time since job start (4670s) is within the limit (172800.0s)
[2025-10-17 09:25:26] 2025-10-17 13:24:48,154 | INFO     | job 6847341128 has state=finished
[2025-10-17 09:25:26] 2025-10-17 13:24:48,154 | INFO     | preparing for final server update for job 6847341128 in state='finished'
[2025-10-17 09:25:26] 2025-10-17 13:24:48,170 | INFO     | this job has now completed (state=finished)
[2025-10-17 09:25:26] 2025-10-17 13:24:48,171 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-17 09:25:26] 2025-10-17 13:24:48,171 | INFO     | log transfer has been attempted: DONE
[2025-10-17 09:25:26] 2025-10-17 13:24:48,171 | INFO     | job 6847341128 has finished - writing final server update
[2025-10-17 09:25:26] 2025-10-17 13:24:48,171 | INFO     | total number of processed events: 400 (read)
[2025-10-17 09:25:26] 2025-10-17 13:24:48,172 | INFO     | executing command: lscpu
[2025-10-17 09:25:26] 2025-10-17 13:24:48,197 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-17 09:25:26] 2025-10-17 13:24:48,210 | INFO     | monitor loop #348: job 0:6847341128 is in state 'finished'
[2025-10-17 09:25:26] 2025-10-17 13:24:48,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 09:25:26] 2025-10-17 13:24:48,912 | INFO     | time since job start (4672s) is within the limit (172800.0s)
[2025-10-17 09:25:26] 2025-10-17 13:24:50,714 | INFO     | monitor loop #349: job 0:6847341128 is in state 'finished'
[2025-10-17 09:25:26] 2025-10-17 13:24:50,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-17 09:25:26] 2025-10-17 13:24:50,917 | INFO     | time since job start (4674s) is within the limit (172800.0s)
[2025-10-17 09:25:26] 2025-10-17 13:24:52,922 | INFO     | time since job start (4676s) is within the limit (172800.0s)
[2025-10-17 09:25:26] 2025-10-17 13:24:52,990 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-17 09:25:26] 2025-10-17 13:24:52,994 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-17 09:25:26] 2025-10-17 13:24:52,997 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6847341128/memory_monitor_summary.json (trf name=prmon)
[2025-10-17 09:25:26] 2025-10-17 13:24:52,998 | INFO     | extracted standard info from prmon json
[2025-10-17 09:25:26] 2025-10-17 13:24:52,998 | INFO     | extracted standard memory fields from prmon json
[2025-10-17 09:25:26] 2025-10-17 13:24:52,998 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-17 09:25:26] 2025-10-17 13:24:52,999 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-17 09:25:26] 2025-10-17 13:24:52,999 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-17 09:25:26] 2025-10-17 13:24:53,001 | INFO     | fitting pss+swap vs Time
[2025-10-17 09:25:26] 2025-10-17 13:24:53,002 | INFO     | sum of square deviations: 101843770.0
[2025-10-17 09:25:26] 2025-10-17 13:24:53,002 | INFO     | sum of deviations: 1688387706.9999993
[2025-10-17 09:25:26] 2025-10-17 13:24:53,002 | INFO     | mean x: 1760705225.0
[2025-10-17 09:25:26] 2025-10-17 13:24:53,003 | INFO     | mean y: 2667264.115942029
[2025-10-17 09:25:26] 2025-10-17 13:24:53,003 | INFO     | -- intersect: -29186678903.45688
[2025-10-17 09:25:26] 2025-10-17 13:24:53,003 | INFO     | intersect: -29186678903.45688
[2025-10-17 09:25:26] 2025-10-17 13:24:53,003 | INFO     | chi2: 0.01353587209873643
[2025-10-17 09:25:26] 2025-10-17 13:24:53,004 | INFO     | -- intersect: -29186678903.45688
[2025-10-17 09:25:26] 2025-10-17 13:24:53,004 | INFO     | current memory leak: 16.58 B/s (using 69 data points, chi2=0.01)
[2025-10-17 09:25:26] 2025-10-17 13:24:53,004 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-10-17 09:25:26] 2025-10-17 13:24:53,004 | INFO     | ..............................
[2025-10-17 09:25:26] 2025-10-17 13:24:53,005 | INFO     | . Timing measurements:
[2025-10-17 09:25:26] 2025-10-17 13:24:53,005 | INFO     | . get job = 0 s
[2025-10-17 09:25:26] 2025-10-17 13:24:53,005 | INFO     | . initial setup = 2 s
[2025-10-17 09:25:26] 2025-10-17 13:24:53,005 | INFO     | . payload setup = 7 s
[2025-10-17 09:25:26] 2025-10-17 13:24:53,005 | INFO     | . stage-in = 0 s
[2025-10-17 09:25:26] 2025-10-17 13:24:53,005 | INFO     | . payload execution = 4640 s
[2025-10-17 09:25:26] 2025-10-17 13:24:53,006 | INFO     | . stage-out = 0 s
[2025-10-17 09:25:26] 2025-10-17 13:24:53,006 | INFO     | . log creation = 0 s
[2025-10-17 09:25:26] 2025-10-17 13:24:53,006 | INFO     | ..............................
[2025-10-17 09:25:26] 2025-10-17 13:24:53,232 | INFO     | 
[2025-10-17 09:25:26] 2025-10-17 13:24:53,232 | INFO     | job summary report
[2025-10-17 09:25:26] 2025-10-17 13:24:53,241 | INFO     | --------------------------------------------------
[2025-10-17 09:25:26] 2025-10-17 13:24:53,241 | INFO     | PanDA job id: 6847341128
[2025-10-17 09:25:26] 2025-10-17 13:24:53,241 | INFO     | task id: 46771637
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | errors: (none)
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | pilot state: finished 
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | transexitcode: 0
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | exeerrorcode: 0
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | exeerrordiag: 
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | exitcode: 0
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | exitmsg: OK
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | cpuconsumptiontime: 50235 s
[2025-10-17 09:25:26] 2025-10-17 13:24:53,242 | INFO     | nevents: 400
[2025-10-17 09:25:26] 2025-10-17 13:24:53,243 | INFO     | neventsw: 0
[2025-10-17 09:25:26] 2025-10-17 13:24:53,243 | INFO     | pid: 23503
[2025-10-17 09:25:26] 2025-10-17 13:24:53,243 | INFO     | pgrp: 23503
[2025-10-17 09:25:26] 2025-10-17 13:24:53,243 | INFO     | corecount: 12
[2025-10-17 09:25:26] 2025-10-17 13:24:53,243 | INFO     | event service: False
[2025-10-17 09:25:26] 2025-10-17 13:24:53,243 | INFO     | sizes: {0: 2348756, 1: 2348955, 5: 2349217, 11: 2349273, 4652: 2375404, 4653: 2384402, 4654: 2384586, 4660: 2384780}
[2025-10-17 09:25:26] 2025-10-17 13:24:53,243 | INFO     | --------------------------------------------------
[2025-10-17 09:25:26] 2025-10-17 13:24:53,243 | INFO     | 
[2025-10-17 09:25:26] 2025-10-17 13:24:53,243 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-17 09:25:26] 2025-10-17 13:24:53,272 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,272 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,272 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,272 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,273 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,273 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,273 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,273 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,274 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,274 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,274 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,274 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,274 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,275 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,275 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,275 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-17 09:25:26] 2025-10-17 13:24:53,275 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,275 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-17 09:25:26] 2025-10-17 13:24:53,275 | INFO     | job 6847341128 has completed (purged errors)
[2025-10-17 09:25:26] 2025-10-17 13:24:53,276 | INFO     | overall cleanup function is called
[2025-10-17 09:25:26] 2025-10-17 13:24:54,283 | INFO     | --- collectZombieJob: --- 10, [23503]
[2025-10-17 09:25:26] 2025-10-17 13:24:54,283 | INFO     | zombie collector waiting for pid 23503
[2025-10-17 09:25:26] 2025-10-17 13:24:54,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-17 09:25:26] 2025-10-17 13:24:54,284 | INFO     | collected zombie processes
[2025-10-17 09:25:26] 2025-10-17 13:24:54,284 | INFO     | will attempt to kill all subprocesses of pid=23503
[2025-10-17 09:25:26] 2025-10-17 13:24:54,373 | INFO     | process IDs to be killed: [23503] (in reverse order)
[2025-10-17 09:25:26] 2025-10-17 13:24:54,428 | WARNING  | found no corresponding commands to process id(s)
[2025-10-17 09:25:26] 2025-10-17 13:24:54,428 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-17 09:25:26] 2025-10-17 13:24:54,431 | INFO     | did not find any defunct processes belonging to 23503
[2025-10-17 09:25:26] 2025-10-17 13:24:54,434 | INFO     | did not find any defunct processes belonging to 23503
[2025-10-17 09:25:26] 2025-10-17 13:24:54,434 | INFO     | ready for new job
[2025-10-17 09:25:26] 2025-10-17 13:24:54,434 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-17 09:25:26] 2025-10-17 13:24:54,435 | INFO     | ***************************************
[2025-10-17 09:25:26] 2025-10-17 13:24:54,436 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-17 09:25:26] 2025-10-17 13:24:54,436 | INFO     | ***************************************
[2025-10-17 09:25:26] 2025-10-17 13:24:54,436 | INFO     | 
[2025-10-17 09:25:26] 2025-10-17 13:24:54,437 | INFO     | architecture information:
[2025-10-17 09:25:26] 2025-10-17 13:24:54,437 | INFO     | executing command: cat /etc/os-release
[2025-10-17 09:25:26] 2025-10-17 13:24:54,452 | INFO     | cat /etc/os-release:
[2025-10-17 09:25:26] NAME="CentOS Linux"
[2025-10-17 09:25:26] VERSION="7 (Core)"
[2025-10-17 09:25:26] ID="centos"
[2025-10-17 09:25:26] ID_LIKE="rhel fedora"
[2025-10-17 09:25:26] VERSION_ID="7"
[2025-10-17 09:25:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-17 09:25:26] ANSI_COLOR="0;31"
[2025-10-17 09:25:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-17 09:25:26] HOME_URL="https://www.centos.org/"
[2025-10-17 09:25:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-17 09:25:26] 
[2025-10-17 09:25:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-17 09:25:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-17 09:25:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-17 09:25:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-17 09:25:26] 
[2025-10-17 09:25:26] 2025-10-17 13:24:54,452 | INFO     | ***************************************
[2025-10-17 09:25:26] 2025-10-17 13:24:54,955 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-17 09:25:26] 2025-10-17 13:24:54,973 | INFO     | sufficient remaining disk space (29459742720 B)
[2025-10-17 09:25:26] 2025-10-17 13:24:54,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-17 09:25:26] 2025-10-17 13:24:54,973 | INFO     | current server update state: UPDATING_FINAL
[2025-10-17 09:25:26] 2025-10-17 13:24:54,973 | INFO     | update_server=False
[2025-10-17 09:25:26] 2025-10-17 13:24:54,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-17 09:25:26] 2025-10-17 13:24:54,974 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-17 09:25:26] 2025-10-17 13:24:54,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-17 09:25:26] 2025-10-17 13:24:54,974 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-17 09:25:26] 2025-10-17 13:24:54,975 | INFO     | aborting loop
[2025-10-17 09:25:26] 2025-10-17 13:24:55,112 | INFO     | all payload control threads have been joined
[2025-10-17 09:25:26] 2025-10-17 13:24:55,361 | INFO     | all job control threads have been joined
[2025-10-17 09:25:26] 2025-10-17 13:24:55,446 | INFO     | all data control threads have been joined
[2025-10-17 09:25:26] 2025-10-17 13:24:55,976 | INFO     | [job] retrieve thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:55,979 | INFO     | [job] queue monitor thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:55,980 | INFO     | [job] job monitor thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,111 | INFO     | [payload] execute_payloads thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,118 | INFO     | [payload] control thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,362 | INFO     | [job] control thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,381 | INFO     | [job] create_data_payload thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,429 | INFO     | [payload] failed_post thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,451 | INFO     | [data] control thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,603 | INFO     | [payload] validate_pre thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,681 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,754 | INFO     | [data] copytool_in thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,980 | INFO     | [data] copytool_out thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:56,999 | INFO     | [payload] validate_post thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:57,375 | INFO     | [job] validate thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:24:57,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-17 09:25:26] 2025-10-17 13:25:01,437 | INFO     | [data] queue_monitor thread has finished
[2025-10-17 09:25:26] 2025-10-17 13:25:03,700 | INFO     | [monitor] cgroup control has ended
[2025-10-17 09:25:26] 2025-10-17 13:25:04,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872204494656)>', '<ExcThread(monitor, started 139871624611584)>']
[2025-10-17 09:25:26] 2025-10-17 13:25:09,299 | INFO     | all workflow threads have been joined
[2025-10-17 09:25:26] 2025-10-17 13:25:09,299 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-17 09:25:26] 2025-10-17 13:25:09,299 | INFO     | traces error code: 0
[2025-10-17 09:25:26] 2025-10-17 13:25:09,299 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-17 09:25:26] 2025-10-17 13:25:26,114 | INFO     | PID=16101 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-17 09:25:26] 2025-10-17 13:25:26,115 | INFO     | found 0 job(s) in 20 queues
[2025-10-17 09:25:26] 2025-10-17 13:25:26,115 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-17 09:25:26] 2025-10-17 13:25:26,115 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-17 09:25:26] 2025-10-17 13:25:26,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-17 09:25:26] 2025-10-17 13:25:26,116 | INFO     | [monitor] control thread has ended
[2025-10-17 09:25:26] 2025-10-17 13:25:26,201 [wrapper] ==== pilot stdout END ====
[2025-10-17 09:25:26] 2025-10-17 13:25:26,205 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-17 09:25:26] 2025-10-17 13:25:26,209 [wrapper] pilotpid: 16101
[2025-10-17 09:25:26] 2025-10-17 13:25:26,213 [wrapper] Pilot exit status: 0
[2025-10-17 09:25:26] 2025-10-17 13:25:26,230 [wrapper] pandaids: 6847341128
[2025-10-17 09:25:26] 2025-10-17 13:25:26,268 [wrapper] cleanup supervisor_pilot 16766 16102
[2025-10-17 09:25:26] 2025-10-17 13:25:26,272 [wrapper] Test setup, not cleaning
[2025-10-17 09:25:26] 2025-10-17 13:25:26,276 [wrapper] apfmon messages muted
[2025-10-17 09:25:26] 2025-10-17 13:25:26,280 [wrapper] ==== wrapper stdout END ====
[2025-10-17 09:25:26] 2025-10-17 13:25:26,284 [wrapper] ==== wrapper stderr END ====
[2025-10-17 09:25:26]  *** Error codes and diagnostics ***
[2025-10-17 09:25:26]     "exeErrorCode": 0,
[2025-10-17 09:25:26]     "exeErrorDiag": "",
[2025-10-17 09:25:26]     "pilotErrorCode": 0,
[2025-10-17 09:25:26]     "pilotErrorDiag": "",
[2025-10-17 09:25:26]  *** Listing of results directory ***
[2025-10-17 09:25:26] total 427944
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas    557409 Oct 16 20:34 pilot3.tar.gz
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas      5112 Oct 16 20:46 queuedata.json
[2025-10-17 09:25:26] -rwx------ 1 boincer umatlas     36292 Oct 16 20:51 runpilot2-wrapper.sh
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas       100 Oct 17 08:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-17 09:25:26] -rwxr-xr-x 1 boincer umatlas      7986 Oct 17 08:06 run_atlas
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas       105 Oct 17 08:06 job.xml
[2025-10-17 09:25:26] -rw-r--r-- 2 boincer umatlas 227616663 Oct 17 08:06 EVNT.46771634._000861.pool.root.1
[2025-10-17 09:25:26] -rw-r--r-- 2 boincer umatlas     15120 Oct 17 08:06 start_atlas.sh
[2025-10-17 09:25:26] drwxrwx--x 2 boincer umatlas      4096 Oct 17 08:06 shared
[2025-10-17 09:25:26] -rw-r--r-- 2 boincer umatlas    569672 Oct 17 08:06 input.tar.gz
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas         0 Oct 17 08:06 boinc_lockfile
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas      2557 Oct 17 08:06 pandaJob.out
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas    976749 Oct 17 08:06 agis_schedconf.cvmfs.json
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas   1560740 Oct 17 08:06 agis_ddmendpoints.agis.ALL.json
[2025-10-17 09:25:26] drwx------ 5 boincer umatlas      4096 Oct 17 08:06 pilot3
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas      5952 Oct 17 09:20 init_data.xml
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas 204587231 Oct 17 09:24 HITS.46771637._020798.pool.root.1
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas       529 Oct 17 09:24 boinc_task_state.xml
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas      1048 Oct 17 09:24 memory_monitor_summary.json
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas    380853 Oct 17 09:24 log.46771637._020798.job.log.tgz.1
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas      7861 Oct 17 09:24 heartbeat.json
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas        27 Oct 17 09:24 wrapper_checkpoint.txt
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas      8192 Oct 17 09:24 boinc_mmap_file
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas        95 Oct 17 09:25 pilot_heartbeat.json
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas       745 Oct 17 09:25 pilotlog.txt
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas    675793 Oct 17 09:25 log.46771637._020798.job.log.1
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas       357 Oct 17 09:25 output.list
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas       620 Oct 17 09:25 runtime_log
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas   1075200 Oct 17 09:25 result.tar.gz
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas      8700 Oct 17 09:25 runtime_log.err
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas       658 Oct 17 09:25 BHfLDmjrnT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhFsNDmfHmCQm.diag
[2025-10-17 09:25:26] -rw-r--r-- 1 boincer umatlas     21699 Oct 17 09:25 stderr.txt
[2025-10-17 09:25:26] HITS file was successfully produced:
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas 204587231 Oct 17 09:24 shared/HITS.pool.root.1
[2025-10-17 09:25:26]  *** Contents of shared directory: ***
[2025-10-17 09:25:26] total 423712
[2025-10-17 09:25:26] -rw-r--r-- 2 boincer umatlas 227616663 Oct 17 08:06 ATLAS.root_0
[2025-10-17 09:25:26] -rw-r--r-- 2 boincer umatlas     15120 Oct 17 08:06 start_atlas.sh
[2025-10-17 09:25:26] -rw-r--r-- 2 boincer umatlas    569672 Oct 17 08:06 input.tar.gz
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas 204587231 Oct 17 09:24 HITS.pool.root.1
[2025-10-17 09:25:26] -rw------- 1 boincer umatlas   1075200 Oct 17 09:25 result.tar.gz
09:25:27 (12410): run_atlas exited; CPU time 50207.419130
09:25:27 (12410): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN