Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-18 06:54:13 (6548): vboxwrapper version 26210
2025-10-18 06:54:13 (6548): BOINC client version: 8.2.4
2025-10-18 06:54:13 (6548): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-18 06:54:13 (6548): Successfully copied 'init_data.xml' to the shared directory.
2025-10-18 06:54:14 (6548): Create VM. (boinc_4d37adfcad8b8ff9, slot#0)
2025-10-18 06:54:14 (6548): Setting Memory Size for VM. (4000MB)
2025-10-18 06:54:14 (6548): Setting CPU Count for VM. (4)
2025-10-18 06:54:15 (6548): Setting Chipset Options for VM.
2025-10-18 06:54:15 (6548): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-18 06:54:15 (6548): Setting Boot Options for VM.
2025-10-18 06:54:16 (6548): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-18 06:54:16 (6548): Enabling VM Network Access.
2025-10-18 06:54:16 (6548): Disabling USB Support for VM.
2025-10-18 06:54:16 (6548): Disabling COM Port Support for VM.
2025-10-18 06:54:17 (6548): Disabling LPT Port Support for VM.
2025-10-18 06:54:17 (6548): Disabling Audio Support for VM.
2025-10-18 06:54:17 (6548): Disabling Clipboard Support for VM.
2025-10-18 06:54:18 (6548): Disabling Drag and Drop Support for VM.
2025-10-18 06:54:18 (6548): Adding storage controller(s) to VM.
2025-10-18 06:54:18 (6548): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-18 06:54:20 (6548): Adding VirtualBox Guest Additions to VM.
2025-10-18 06:54:20 (6548): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-18 06:54:21 (6548): forwarding host port 49683 to guest port 80
2025-10-18 06:54:21 (6548): Enabling remote desktop for VM.
2025-10-18 06:54:21 (6548): Enabling shared directory for VM.
2025-10-18 06:54:22 (6548): Starting VM using VBoxManage interface. (boinc_4d37adfcad8b8ff9, slot#0)
2025-10-18 06:54:28 (6548): Successfully started VM. (PID = '3348')
2025-10-18 06:54:28 (6548): Reporting VM Process ID to BOINC.
2025-10-18 06:54:28 (6548): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-18 06:54:28 (6548): Guest Log: CPUID EDX: 0x178bfbff
2025-10-18 06:54:28 (6548): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-18 06:54:28 (6548): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-18 06:54:28 (6548): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-18 06:54:28 (6548): Detected: Web Application Enabled (http://localhost:49683)
2025-10-18 06:54:28 (6548): Detected: Remote Desktop Enabled (localhost:49685)
2025-10-18 06:54:28 (6548): Preference change detected
2025-10-18 06:54:28 (6548): Setting CPU throttle for VM. (100%)
2025-10-18 06:54:28 (6548): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 360 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-18 06:54:30 (6548): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-18 06:54:30 (6548): Guest Log: BIOS: Booting from Hard Disk...
2025-10-18 06:54:33 (6548): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-18 06:54:33 (6548): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-18 06:54:33 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-18 06:54:40 (6548): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-18 06:54:40 (6548): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-18 06:54:48 (6548): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-18 06:54:48 (6548): Guest Log: 00:00:00.000285 main     Log opened 2025-10-18T06:54:47.173959000Z
2025-10-18 06:54:48 (6548): Guest Log: 00:00:00.000389 main     OS Product: Linux
2025-10-18 06:54:48 (6548): Guest Log: 00:00:00.000428 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-18 06:54:48 (6548): Guest Log: 00:00:00.000460 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-18 06:54:48 (6548): Guest Log: 00:00:00.000492 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-18 06:54:48 (6548): Guest Log: 00:00:00.000493 main     Process ID: 1302
2025-10-18 06:54:48 (6548): Guest Log: 00:00:00.000495 main     Package type: LINUX_64BITS_GENERIC
2025-10-18 06:54:48 (6548): Guest Log: 00:00:00.001938 main     5.2.32 r132073 started. Verbose level = 0
2025-10-18 06:54:48 (6548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-18 06:54:48 (6548): Guest Log: [INFO] Mounting shared directory
2025-10-18 06:54:49 (6548): Guest Log: [INFO] Checking for init_data.xml
2025-10-18 06:54:52 (6548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-18 06:54:52 (6548): Guest Log: [INFO] Detected branch: prod
2025-10-18 06:54:52 (6548): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-18 06:54:52 (6548): Guest Log: Copying input files
2025-10-18 06:54:54 (6548): Guest Log: Copied input files into RunAtlas.
2025-10-18 06:54:54 (6548): Guest Log: Detected user-configured HTTP proxy at http://treacle:3128 - will set in /etc/cvmfs/default.local
2025-10-18 06:54:58 (6548): Guest Log: 00:00:10.004457 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 967 140 000ns (GuestNow=1 760 766 898 209 971 000 ns GuestLast=1 760 770 487 177 111 000 ns fSetTimeLastLoop=true )
2025-10-18 06:55:09 (6548): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-18 06:55:09 (6548): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-18 06:55:09 (6548): Guest Log: 2.6.3.0 1577 0 31656 151840 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.15:3128 1
2025-10-18 06:55:11 (6548): Guest Log: copied the webapp to /var/www
2025-10-18 06:55:11 (6548): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-18 06:55:11 (6548): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-18 06:55:11 (6548): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-18 06:55:11 (6548): Guest Log:  *** Starting ATLAS job. (PandaID=6848326748 taskID=46808926) ***
2025-10-18 07:45:04 (6548): VM state change detected. (old = 'running', new = 'paused')
2025-10-18 08:40:03 (6548): VM state change detected. (old = 'paused', new = 'running')
2025-10-18 08:40:08 (6548): Guest Log: 00:50:20.773631 timesync vgsvcTimeSyncWorker: Radical host time change: 3 309 338 000 000ns (HostNow=1 760 773 208 316 000 000 ns HostLast=1 760 769 898 978 000 000 ns)
2025-10-18 08:40:18 (6548): Guest Log: 00:50:30.784166 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 309 347 875 000ns (GuestNow=1 760 773 218 326 626 000 ns GuestLast=1 760 769 908 978 751 000 ns fSetTimeLastLoop=true )
2025-10-18 09:29:33 (6548): Status Report: Elapsed Time: '6000.000000'
2025-10-18 09:29:33 (6548): Status Report: CPU Time: '20555.656250'
2025-10-18 11:09:38 (6548): Status Report: Elapsed Time: '12000.000000'
2025-10-18 11:09:38 (6548): Status Report: CPU Time: '44528.187500'
2025-10-18 12:00:04 (6548): VM state change detected. (old = 'running', new = 'paused')
2025-10-18 13:00:04 (6548): VM state change detected. (old = 'paused', new = 'running')
2025-10-18 13:00:11 (6548): Guest Log: 04:10:23.937600 timesync vgsvcTimeSyncWorker: Radical host time change: 3 609 542 000 000ns (HostNow=1 760 788 810 862 000 000 ns HostLast=1 760 785 201 320 000 000 ns)
2025-10-18 13:00:21 (6548): Guest Log: 04:10:33.938192 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 609 382 977 000ns (GuestNow=1 760 788 820 862 672 000 ns GuestLast=1 760 785 211 479 695 000 ns fSetTimeLastLoop=true )
2025-10-18 13:49:44 (6548): Status Report: Elapsed Time: '18000.000000'
2025-10-18 13:49:44 (6548): Status Report: CPU Time: '68535.234375'
2025-10-18 14:27:00 (6548): Guest Log:  *** Job finished ***
2025-10-18 14:27:00 (6548): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:45,273 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:45,273 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:53,253 | INFO     | [monitor] cgroup control has ended
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:53,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139828608948032)>', '<ExcThread(monitor, started 139827961919232)>']
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:54,313 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:54,313 | INFO     | [monitor] control thread has ended
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:58,565 | INFO     | all workflow threads have been joined
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:58,565 | INFO     | end of generic workflow (traces error code: 0)
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:58,566 | INFO     | traces error code: 0
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:58,566 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:58,709 [wrapper] ==== pilot stdout END ====
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:58,714 [wrapper] ==== wrapper stdout RESUME ====
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:58,720 [wrapper] pilotpid: 6018
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:58,726 [wrapper] Pilot exit status: 0
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:59,026 [wrapper] pandaids: 6848326748
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:59,066 [wrapper] cleanup supervisor_pilot 25067 6019
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:59,073 [wrapper] Test setup, not cleaning
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:59,078 [wrapper] apfmon messages muted
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:59,084 [wrapper] ==== wrapper stdout END ====
2025-10-18 14:27:00 (6548): Guest Log: 2025-10-18 13:26:59,090 [wrapper] ==== wrapper stderr END ====
2025-10-18 14:27:00 (6548): Guest Log:  *** Error codes and diagnostics ***
2025-10-18 14:27:00 (6548): Guest Log:     "exeErrorCode": 0,
2025-10-18 14:27:00 (6548): Guest Log:     "exeErrorDiag": "",
2025-10-18 14:27:00 (6548): Guest Log:     "pilotErrorCode": 0,
2025-10-18 14:27:00 (6548): Guest Log:     "pilotErrorDiag": "",
2025-10-18 14:27:00 (6548): Guest Log:  *** Listing of results directory ***
2025-10-18 14:27:00 (6548): Guest Log: total 211824
2025-10-18 14:27:00 (6548): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 17 06:41 pilot3.tar.gz
2025-10-18 14:27:00 (6548): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 17 06:43 queuedata.json
2025-10-18 14:27:00 (6548): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 17 06:45 runpilot2-wrapper.sh
2025-10-18 14:27:00 (6548): Guest Log: -rwxr-xr-x. 1 atlas atlas     11015 Oct 18 05:54 init_data.xml
2025-10-18 14:27:00 (6548): Guest Log: -rwxr-xr-x. 1 atlas atlas    569678 Oct 18 05:54 input.tar.gz
2025-10-18 14:27:00 (6548): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 18 05:54 start_atlas.sh
2025-10-18 14:27:00 (6548): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 18 05:54 EVNT.46808924._000135.pool.root.1 -> /data/./ATLAS.root_0
2025-10-18 14:27:00 (6548): Guest Log: -rw-r--r--. 1 atlas atlas      2544 Oct 18 05:55 pandaJob.out
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas    976749 Oct 18 05:58 agis_schedconf.cvmfs.json
2025-10-18 14:27:00 (6548): Guest Log: drwx------. 5 atlas atlas      4096 Oct 18 05:58 pilot3
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas 206864600 Oct 18 13:24 HITS.46808926._003350.pool.root.1
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas      1033 Oct 18 13:25 memory_monitor_summary.json
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 18 13:25 agis_ddmendpoints.agis.ALL.json
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas    485680 Oct 18 13:25 log.46808926._003350.job.log.tgz.1
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas        97 Oct 18 13:26 pilot_heartbeat.json
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas      7792 Oct 18 13:26 heartbeat.json
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 18 13:26 pilotlog.txt
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas   2616014 Oct 18 13:26 log.46808926._003350.job.log.1
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas       357 Oct 18 13:26 output.list
2025-10-18 14:27:00 (6548): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 18 13:26 runtime_log
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas   3123200 Oct 18 13:26 result.tar.gz
2025-10-18 14:27:00 (6548): Guest Log: -rw-------. 1 atlas atlas       662 Oct 18 13:26 xjHMDmcOtT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmliZMDmEVBHcn.diag
2025-10-18 14:27:00 (6548): Guest Log: -rw-r--r--. 1 atlas atlas      8642 Oct 18 13:26 runtime_log.err
2025-10-18 14:27:00 (6548): Guest Log: Looking for outputfile HITS.46808926._003350.pool.root.1
2025-10-18 14:27:00 (6548): Guest Log: HITS file was successfully produced
2025-10-18 14:27:01 (6548): Guest Log: -rw-------. 1 atlas atlas 206864600 Oct 18 13:24 /home/atlas/RunAtlas/HITS.46808926._003350.pool.root.1
2025-10-18 14:27:01 (6548): Guest Log: Successfully finished the ATLAS job!
2025-10-18 14:27:01 (6548): Guest Log: Copying the results back to the shared directory!
2025-10-18 14:27:02 (6548): Guest Log:  *** Contents of shared directory: ***
2025-10-18 14:27:02 (6548): Guest Log: total 427368
2025-10-18 14:27:02 (6548): Guest Log: -rwxrwxrwx. 1 root root 227026172 Oct 18 05:54 ATLAS.root_0
2025-10-18 14:27:02 (6548): Guest Log: -rwxrwxrwx. 1 root root 206864600 Oct 18 13:27 HITS.pool.root.1
2025-10-18 14:27:02 (6548): Guest Log: -rwxrwxrwx. 1 root root     11015 Oct 18 05:54 init_data.xml
2025-10-18 14:27:02 (6548): Guest Log: -rwxrwxrwx. 1 root root    569678 Oct 17 12:01 input.tar.gz
2025-10-18 14:27:02 (6548): Guest Log: -rwxrwxrwx. 1 root root   3123200 Oct 18 13:27 result.tar.gz
2025-10-18 14:27:02 (6548): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 17 12:01 start_atlas.sh
2025-10-18 14:27:02 (6548): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-18 14:27:02 (6548): VM Completion File Detected.
2025-10-18 14:27:02 (6548): Powering off VM.
2025-10-18 14:27:03 (6548): Successfully stopped VM.
2025-10-18 14:27:03 (6548): Deregistering VM. (boinc_4d37adfcad8b8ff9, slot#0)
2025-10-18 14:27:03 (6548): Removing network bandwidth throttle group from VM.
2025-10-18 14:27:04 (6548): Removing VM from VirtualBox.
2025-10-18 14:27:09 (6548): called boinc_finish(0)

</stderr_txt>
]]>

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