Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:18:29 (3337760): wrapper (7.7.26015): starting
23:18:29 (3337760): wrapper: running run_atlas (--nthreads 2)
[2025-10-17 23:18:29] Arguments: --nthreads 2
[2025-10-17 23:18:29] Threads: 2
[2025-10-17 23:18:29] Checking for CVMFS
[2025-10-17 23:18:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 23:18:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 23:18:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 23:18:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 23:18:29] 2.9.2.0 2746064 2707 57868 151829 2 56 28684336 36864001 0 130560 0 1536993 99.987 102280 2606 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-17 23:18:29] CVMFS is ok
[2025-10-17 23:18:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-17 23:18:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-17 23:18:29] Further information can be found at the LHC@home message board.
[2025-10-17 23:18:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 23:18:29] Checking for apptainer binary...
[2025-10-17 23:18:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 23:18:29] Running /usr/bin/apptainer --version
[2025-10-17 23:18:29] apptainer version 1.4.1-1.1
[2025-10-17 23:18:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 23:18:29] thA337
[2025-10-17 23:18:29] apptainer works
[2025-10-17 23:18:29] Set ATHENA_PROC_NUMBER=2
[2025-10-17 23:18:29] Set ATHENA_CORE_NUMBER=2
[2025-10-17 23:18:29] Starting ATLAS job with PandaID=6847344115
[2025-10-17 23:18:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 01:33:16]  *** The last 200 lines of the pilot log: ***
[2025-10-18 01:33:16] 2025-10-17 23:32:45,058 | INFO     | collected zombie processes
[2025-10-18 01:33:16] 2025-10-17 23:32:45,058 | INFO     | will attempt to kill all subprocesses of pid=3347871
[2025-10-18 01:33:16] 2025-10-17 23:32:45,090 | INFO     | process IDs to be killed: [3347871] (in reverse order)
[2025-10-18 01:33:16] 2025-10-17 23:32:45,110 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 01:33:16] 2025-10-17 23:32:45,111 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 01:33:16] 2025-10-17 23:32:45,111 | INFO     | did not find any defunct processes belonging to 3347871
[2025-10-18 01:33:16] 2025-10-17 23:32:45,112 | INFO     | did not find any defunct processes belonging to 3347871
[2025-10-18 01:33:16] 2025-10-17 23:32:45,112 | INFO     | ready for new job
[2025-10-18 01:33:16] 2025-10-17 23:32:45,112 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 01:33:16] 2025-10-17 23:32:45,112 | INFO     | ***************************************
[2025-10-18 01:33:16] 2025-10-17 23:32:45,112 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 01:33:16] 2025-10-17 23:32:45,113 | INFO     | ***************************************
[2025-10-18 01:33:16] 2025-10-17 23:32:45,113 | INFO     | 
[2025-10-18 01:33:16] 2025-10-17 23:32:45,113 | INFO     | architecture information:
[2025-10-18 01:33:16] 2025-10-17 23:32:45,113 | INFO     | executing command: cat /etc/os-release
[2025-10-18 01:33:16] 2025-10-17 23:32:45,121 | INFO     | cat /etc/os-release:
[2025-10-18 01:33:16] NAME="CentOS Linux"
[2025-10-18 01:33:16] VERSION="7 (Core)"
[2025-10-18 01:33:16] ID="centos"
[2025-10-18 01:33:16] ID_LIKE="rhel fedora"
[2025-10-18 01:33:16] VERSION_ID="7"
[2025-10-18 01:33:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 01:33:16] ANSI_COLOR="0;31"
[2025-10-18 01:33:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 01:33:16] HOME_URL="https://www.centos.org/"
[2025-10-18 01:33:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 01:33:16] 
[2025-10-18 01:33:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 01:33:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 01:33:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 01:33:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 01:33:16] 
[2025-10-18 01:33:16] 2025-10-17 23:32:45,121 | INFO     | ***************************************
[2025-10-18 01:33:16] 2025-10-17 23:32:45,624 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 01:33:16] 2025-10-17 23:32:45,636 | INFO     | sufficient remaining disk space (482348105728 B)
[2025-10-18 01:33:16] 2025-10-17 23:32:45,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 01:33:16] 2025-10-17 23:32:45,636 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 01:33:16] 2025-10-17 23:32:45,636 | INFO     | update_server=False
[2025-10-18 01:33:16] 2025-10-17 23:32:45,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 01:33:16] 2025-10-17 23:32:45,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 01:33:16] 2025-10-17 23:32:45,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 01:33:16] 2025-10-17 23:32:45,637 | INFO     | aborting loop
[2025-10-18 01:33:16] 2025-10-17 23:32:45,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 01:33:16] 2025-10-17 23:32:45,827 | INFO     | all payload control threads have been joined
[2025-10-18 01:33:16] 2025-10-17 23:32:46,134 | INFO     | all data control threads have been joined
[2025-10-18 01:33:16] 2025-10-17 23:32:46,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 01:33:16] 2025-10-17 23:32:46,642 | INFO     | [job] job monitor thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:46,643 | INFO     | [job] retrieve thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:46,643 | INFO     | [job] queue monitor thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:46,727 | INFO     | [data] copytool_in thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:46,784 | INFO     | all job control threads have been joined
[2025-10-18 01:33:16] 2025-10-17 23:32:46,833 | INFO     | [payload] control thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:46,986 | INFO     | [payload] failed_post thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:47,140 | INFO     | [data] control thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:47,236 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:47,463 | INFO     | [payload] validate_post thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:47,637 | INFO     | [job] validate thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:47,638 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:47,685 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:47,751 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:47,790 | INFO     | [job] control thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:48,351 | INFO     | [data] copytool_out thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:49,644 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 01:33:16] 2025-10-17 23:32:54,287 | INFO     | [monitor] cgroup control has ended
[2025-10-18 01:33:16] 2025-10-17 23:32:54,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140413092267840)>', '<ExcThread(monitor, started 140412454946560)>']
[2025-10-18 01:33:16] 2025-10-17 23:32:59,315 | INFO     | all workflow threads have been joined
[2025-10-18 01:33:16] 2025-10-17 23:32:59,317 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 01:33:16] 2025-10-17 23:32:59,317 | INFO     | traces error code: 0
[2025-10-18 01:33:16] 2025-10-17 23:32:59,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 01:33:16] 2025-10-17 23:33:16,423 | INFO     | PID=3341461 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 01:33:16] 2025-10-17 23:33:16,423 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 01:33:16] 2025-10-17 23:33:16,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 01:33:16] 2025-10-17 23:33:16,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 01:33:16] 2025-10-17 23:33:16,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 01:33:16] 2025-10-17 23:33:16,423 | INFO     | [monitor] control thread has ended
[2025-10-18 01:33:16] 2025-10-17 23:33:16,461 [wrapper] ==== pilot stdout END ====
[2025-10-18 01:33:16] 2025-10-17 23:33:16,463 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 01:33:16] 2025-10-17 23:33:16,465 [wrapper] pilotpid: 3341461
[2025-10-18 01:33:16] 2025-10-17 23:33:16,467 [wrapper] Pilot exit status: 0
[2025-10-18 01:33:16] 2025-10-17 23:33:16,473 [wrapper] pandaids: 6847344115
[2025-10-18 01:33:16] 2025-10-17 23:33:16,485 [wrapper] cleanup supervisor_pilot 3362107 3341462
[2025-10-18 01:33:16] 2025-10-17 23:33:16,487 [wrapper] Test setup, not cleaning
[2025-10-18 01:33:16] 2025-10-17 23:33:16,489 [wrapper] apfmon messages muted
[2025-10-18 01:33:16] 2025-10-17 23:33:16,491 [wrapper] ==== wrapper stdout END ====
[2025-10-18 01:33:16] 2025-10-17 23:33:16,493 [wrapper] ==== wrapper stderr END ====
[2025-10-18 01:33:16]  *** Error codes and diagnostics ***
[2025-10-18 01:33:16]     "exeErrorCode": 0,
[2025-10-18 01:33:16]     "exeErrorDiag": "",
[2025-10-18 01:33:16]     "pilotErrorCode": 0,
[2025-10-18 01:33:16]     "pilotErrorDiag": "",
[2025-10-18 01:33:16]  *** Listing of results directory ***
[2025-10-18 01:33:16] total 426548
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc    557409 Oct 17 07:39 pilot3.tar.gz
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc      5112 Oct 17 08:03 queuedata.json
[2025-10-18 01:33:16] -rwx------ 1 boinc boinc     36292 Oct 17 08:04 runpilot2-wrapper.sh
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc       100 Oct 17 23:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 01:33:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 17 23:18 run_atlas
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc       105 Oct 17 23:18 job.xml
[2025-10-18 01:33:16] -rw-r--r-- 2 boinc boinc 230708633 Oct 17 23:18 EVNT.46771634._001059.pool.root.1
[2025-10-18 01:33:16] -rw-r--r-- 2 boinc boinc    569678 Oct 17 23:18 input.tar.gz
[2025-10-18 01:33:16] -rw-r--r-- 2 boinc boinc     15120 Oct 17 23:18 start_atlas.sh
[2025-10-18 01:33:16] drwxrwx--x 2 boinc boinc      4096 Oct 17 23:18 shared
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc         0 Oct 17 23:18 boinc_setup_complete
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc      6205 Oct 17 23:18 init_data.xml
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc         0 Oct 17 23:18 boinc_lockfile
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc      2557 Oct 17 23:18 pandaJob.out
[2025-10-18 01:33:16] -rw------- 1 boinc boinc    976733 Oct 17 23:18 agis_schedconf.cvmfs.json
[2025-10-18 01:33:16] -rw------- 1 boinc boinc   1560740 Oct 17 23:18 agis_ddmendpoints.agis.ALL.json
[2025-10-18 01:33:16] drwx------ 5 boinc boinc      4096 Oct 17 23:18 pilot3
[2025-10-18 01:33:16] -rw------- 1 boinc boinc 199316200 Oct 18 01:32 HITS.46771637._021571.pool.root.1
[2025-10-18 01:33:16] -rw------- 1 boinc boinc        95 Oct 18 01:32 pilot_heartbeat.json
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc       529 Oct 18 01:32 boinc_task_state.xml
[2025-10-18 01:33:16] -rw------- 1 boinc boinc      1016 Oct 18 01:32 memory_monitor_summary.json
[2025-10-18 01:33:16] -rw------- 1 boinc boinc    275099 Oct 18 01:32 log.46771637._021571.job.log.tgz.1
[2025-10-18 01:33:16] -rw------- 1 boinc boinc      7751 Oct 18 01:32 heartbeat.json
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc        27 Oct 18 01:32 wrapper_checkpoint.txt
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc      8192 Oct 18 01:32 boinc_mmap_file
[2025-10-18 01:33:16] -rw------- 1 boinc boinc       747 Oct 18 01:33 pilotlog.txt
[2025-10-18 01:33:16] -rw------- 1 boinc boinc   1155287 Oct 18 01:33 log.46771637._021571.job.log.1
[2025-10-18 01:33:16] -rw------- 1 boinc boinc       357 Oct 18 01:33 output.list
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc       620 Oct 18 01:33 runtime_log
[2025-10-18 01:33:16] -rw------- 1 boinc boinc   1454080 Oct 18 01:33 result.tar.gz
[2025-10-18 01:33:16] -rw------- 1 boinc boinc       659 Oct 18 01:33 yuFODmElsT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnqsNDm4xOo3n.diag
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc      8777 Oct 18 01:33 runtime_log.err
[2025-10-18 01:33:16] -rw-r--r-- 1 boinc boinc     10282 Oct 18 01:33 stderr.txt
[2025-10-18 01:33:16] HITS file was successfully produced:
[2025-10-18 01:33:16] -rw------- 1 boinc boinc 199316200 Oct 18 01:32 shared/HITS.pool.root.1
[2025-10-18 01:33:16]  *** Contents of shared directory: ***
[2025-10-18 01:33:16] total 421956
[2025-10-18 01:33:16] -rw-r--r-- 2 boinc boinc 230708633 Oct 17 23:18 ATLAS.root_0
[2025-10-18 01:33:16] -rw-r--r-- 2 boinc boinc    569678 Oct 17 23:18 input.tar.gz
[2025-10-18 01:33:16] -rw-r--r-- 2 boinc boinc     15120 Oct 17 23:18 start_atlas.sh
[2025-10-18 01:33:16] -rw------- 1 boinc boinc 199316200 Oct 18 01:32 HITS.pool.root.1
[2025-10-18 01:33:16] -rw------- 1 boinc boinc   1454080 Oct 18 01:33 result.tar.gz
01:33:18 (3337760): run_atlas exited; CPU time 15582.810949
01:33:18 (3337760): called boinc_finish(0)

</stderr_txt>
]]>

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