Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:24:53 (8377): wrapper (7.7.26015): starting
08:24:53 (8377): wrapper: running run_atlas (--nthreads 8)
[2025-10-17 08:24:53] Arguments: --nthreads 8
[2025-10-17 08:24:53] Threads: 8
[2025-10-17 08:24:53] Checking for CVMFS
[2025-10-17 08:24:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 08:24:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 08:24:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 08:24:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 08:24:55] 2.11.2.0 29412 23344 70452 151807 2 60 14885565 25165824 4632 130560 0 6161767 99.972 2233674 1290 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-17 08:24:55] CVMFS is ok
[2025-10-17 08:24:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 08:24:55] Checking for apptainer binary...
[2025-10-17 08:24:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 08:24:55] Running /usr/bin/apptainer --version
[2025-10-17 08:24:56] apptainer version 1.3.2-1.el7
[2025-10-17 08:24:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 08:25:14] cg-vwn399.simple-grid.lan
[2025-10-17 08:25:14] apptainer works
[2025-10-17 08:25:14] Set ATHENA_PROC_NUMBER=8
[2025-10-17 08:25:14] Set ATHENA_CORE_NUMBER=8
[2025-10-17 08:25:14] Starting ATLAS job with PandaID=6846966091
[2025-10-17 08:25:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-17 12:51:04]  *** The last 200 lines of the pilot log: ***
[2025-10-17 12:51:04] 2025-10-17 10:50:09,123 | INFO     | sum of square deviations: 4903347750.0
[2025-10-17 12:51:04] 2025-10-17 10:50:09,133 | INFO     | sum of deviations: -21656840858.00004
[2025-10-17 12:51:04] 2025-10-17 10:50:09,134 | INFO     | mean x: 1760690466.0
[2025-10-17 12:51:04] 2025-10-17 10:50:09,134 | INFO     | mean y: 2508149.7888446217
[2025-10-17 12:51:04] 2025-10-17 10:50:09,134 | INFO     | -- intersect: 7779030470.148425
[2025-10-17 12:51:04] 2025-10-17 10:50:09,134 | INFO     | intersect: 7779030470.148425
[2025-10-17 12:51:04] 2025-10-17 10:50:09,134 | INFO     | chi2: 2.4759553490051402
[2025-10-17 12:51:04] 2025-10-17 10:50:09,135 | INFO     | sum of square deviations: 4616114457.5
[2025-10-17 12:51:04] 2025-10-17 10:50:09,137 | INFO     | sum of deviations: -4696798516.999998
[2025-10-17 12:51:04] 2025-10-17 10:50:09,137 | INFO     | mean x: 1760690313.5
[2025-10-17 12:51:04] 2025-10-17 10:50:09,137 | INFO     | mean y: 2517011.6829268294
[2025-10-17 12:51:04] 2025-10-17 10:50:09,138 | INFO     | -- intersect: 1793982047.8037436
[2025-10-17 12:51:04] 2025-10-17 10:50:09,138 | INFO     | intersect: 1793982047.8037436
[2025-10-17 12:51:04] 2025-10-17 10:50:09,138 | INFO     | chi2: 1.710449066149251
[2025-10-17 12:51:04] 2025-10-17 10:50:09,138 | INFO     | current chi2=1.710449066149251 (change=30.917612596021815 %)
[2025-10-17 12:51:04] 2025-10-17 10:50:09,139 | INFO     | sum of square deviations: 4340323240.0
[2025-10-17 12:51:04] 2025-10-17 10:50:09,140 | INFO     | sum of deviations: -4665069672.000001
[2025-10-17 12:51:04] 2025-10-17 10:50:09,141 | INFO     | mean x: 1760690161.0
[2025-10-17 12:51:04] 2025-10-17 10:50:09,141 | INFO     | mean y: 2517029.2365145227
[2025-10-17 12:51:04] 2025-10-17 10:50:09,141 | INFO     | -- intersect: 1894943426.4626112
[2025-10-17 12:51:04] 2025-10-17 10:50:09,141 | INFO     | intersect: 1894943426.4626112
[2025-10-17 12:51:04] 2025-10-17 10:50:09,141 | INFO     | chi2: 1.7100527972489634
[2025-10-17 12:51:04] 2025-10-17 10:50:09,141 | INFO     | current chi2=1.7100527972489634 (change=0.023167535831965975 %)
[2025-10-17 12:51:04] 2025-10-17 10:50:09,141 | INFO     | right removable region: 240
[2025-10-17 12:51:04] 2025-10-17 10:50:09,142 | INFO     | sum of square deviations: 4616114457.5
[2025-10-17 12:51:04] 2025-10-17 10:50:09,144 | INFO     | sum of deviations: -59688709412.99999
[2025-10-17 12:51:04] 2025-10-17 10:50:09,144 | INFO     | mean x: 1760690618.5
[2025-10-17 12:51:04] 2025-10-17 10:50:09,144 | INFO     | mean y: 2528152.8211382115
[2025-10-17 12:51:04] 2025-10-17 10:50:09,144 | INFO     | -- intersect: 22769153993.97463
[2025-10-17 12:51:04] 2025-10-17 10:50:09,144 | INFO     | intersect: 22769153993.97463
[2025-10-17 12:51:04] 2025-10-17 10:50:09,145 | INFO     | chi2: 1.014560024406477
[2025-10-17 12:51:04] 2025-10-17 10:50:09,145 | INFO     | current chi2=1.014560024406477 (change=59.02349269690442 %)
[2025-10-17 12:51:04] 2025-10-17 10:50:09,152 | INFO     | sum of square deviations: 4340323240.0
[2025-10-17 12:51:04] 2025-10-17 10:50:09,155 | INFO     | sum of deviations: -61686969007.0
[2025-10-17 12:51:04] 2025-10-17 10:50:09,155 | INFO     | mean x: 1760690771.0
[2025-10-17 12:51:04] 2025-10-17 10:50:09,155 | INFO     | mean y: 2529238.9751037345
[2025-10-17 12:51:04] 2025-10-17 10:50:09,155 | INFO     | -- intersect: 25026397512.34083
[2025-10-17 12:51:04] 2025-10-17 10:50:09,155 | INFO     | intersect: 25026397512.34083
[2025-10-17 12:51:04] 2025-10-17 10:50:09,155 | INFO     | chi2: 0.9916429298112166
[2025-10-17 12:51:04] 2025-10-17 10:50:09,156 | INFO     | current chi2=0.9916429298112166 (change=2.258820971057576 %)
[2025-10-17 12:51:04] 2025-10-17 10:50:09,156 | INFO     | left removable region: 20
[2025-10-17 12:51:04] 2025-10-17 10:50:09,156 | INFO     | sum of square deviations: 3301699115.0
[2025-10-17 12:51:04] 2025-10-17 10:50:09,158 | INFO     | sum of deviations: -29831331847.000008
[2025-10-17 12:51:04] 2025-10-17 10:50:09,158 | INFO     | mean x: 1760690740.5
[2025-10-17 12:51:04] 2025-10-17 10:50:09,158 | INFO     | mean y: 2530581.327272727
[2025-10-17 12:51:04] 2025-10-17 10:50:09,158 | INFO     | -- intersect: 15910627573.319735
[2025-10-17 12:51:04] 2025-10-17 10:50:09,158 | INFO     | intersect: 15910627573.319735
[2025-10-17 12:51:04] 2025-10-17 10:50:09,159 | INFO     | chi2: 0.17857970197347375
[2025-10-17 12:51:04] 2025-10-17 10:50:09,165 | INFO     | -- intersect: 15910627573.319735
[2025-10-17 12:51:04] 2025-10-17 10:50:09,166 | INFO     | current memory leak: -9.04 B/s (using 220 data points, chi2=0.18)
[2025-10-17 12:51:04] 2025-10-17 10:50:09,166 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | ..............................
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | . Timing measurements:
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | . get job = 0 s
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | . initial setup = 5 s
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | . payload setup = 113 s
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | . stage-in = 0 s
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | . payload execution = 15303 s
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | . stage-out = 3 s
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | . log creation = 1 s
[2025-10-17 12:51:04] 2025-10-17 10:50:09,167 | INFO     | ..............................
[2025-10-17 12:51:04] 2025-10-17 10:50:09,286 | INFO     | 
[2025-10-17 12:51:04] 2025-10-17 10:50:09,287 | INFO     | job summary report
[2025-10-17 12:51:05] 2025-10-17 10:50:09,287 | INFO     | --------------------------------------------------
[2025-10-17 12:51:05] 2025-10-17 10:50:09,287 | INFO     | PanDA job id: 6846966091
[2025-10-17 12:51:05] 2025-10-17 10:50:09,287 | INFO     | task id: 46776533
[2025-10-17 12:51:05] 2025-10-17 10:50:09,287 | INFO     | errors: (none)
[2025-10-17 12:51:05] 2025-10-17 10:50:09,287 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-17 12:51:05] 2025-10-17 10:50:09,287 | INFO     | pilot state: finished 
[2025-10-17 12:51:05] 2025-10-17 10:50:09,287 | INFO     | transexitcode: 0
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | exeerrorcode: 0
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | exeerrordiag: 
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | exitcode: 0
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | exitmsg: OK
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | cpuconsumptiontime: 57238 s
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | nevents: 400
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | neventsw: 0
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | pid: 18708
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | pgrp: 18708
[2025-10-17 12:51:05] 2025-10-17 10:50:09,288 | INFO     | corecount: 8
[2025-10-17 12:51:05] 2025-10-17 10:50:09,289 | INFO     | event service: False
[2025-10-17 12:51:05] 2025-10-17 10:50:09,289 | INFO     | sizes: {0: 2348102, 1: 2348788, 2: 2348987, 12: 2348987, 23: 2349015, 34: 2349043, 45: 2349199, 55: 2349227, 66: 2349255, 77: 2349283, 88: 2349339, 96: 2349909, 98
[2025-10-17 12:51:05] 2025-10-17 10:50:09,289 | INFO     | --------------------------------------------------
[2025-10-17 12:51:05] 2025-10-17 10:50:09,289 | INFO     | 
[2025-10-17 12:51:05] 2025-10-17 10:50:09,289 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-10-17 12:51:05] 2025-10-17 10:50:09,687 | INFO     | time since job start (15700s) is within the limit (172800.0s)
[2025-10-17 12:51:05] 2025-10-17 10:50:09,772 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,772 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,772 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,772 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-17 12:51:05] 2025-10-17 10:50:09,773 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,774 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-17 12:51:05] 2025-10-17 10:50:09,774 | INFO     | job 6846966091 has completed (purged errors)
[2025-10-17 12:51:05] 2025-10-17 10:50:09,774 | INFO     | overall cleanup function is called
[2025-10-17 12:51:05] 2025-10-17 10:50:10,782 | INFO     | --- collectZombieJob: --- 10, [18708]
[2025-10-17 12:51:05] 2025-10-17 10:50:10,782 | INFO     | zombie collector waiting for pid 18708
[2025-10-17 12:51:05] 2025-10-17 10:50:10,782 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-17 12:51:05] 2025-10-17 10:50:10,783 | INFO     | collected zombie processes
[2025-10-17 12:51:05] 2025-10-17 10:50:10,783 | INFO     | will attempt to kill all subprocesses of pid=18708
[2025-10-17 12:51:05] 2025-10-17 10:50:10,897 | INFO     | process IDs to be killed: [18708] (in reverse order)
[2025-10-17 12:51:05] 2025-10-17 10:50:11,903 | WARNING  | found no corresponding commands to process id(s)
[2025-10-17 12:51:05] 2025-10-17 10:50:11,903 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-17 12:51:05] 2025-10-17 10:50:11,906 | INFO     | did not find any defunct processes belonging to 18708
[2025-10-17 12:51:05] 2025-10-17 10:50:11,909 | INFO     | did not find any defunct processes belonging to 18708
[2025-10-17 12:51:05] 2025-10-17 10:50:11,909 | INFO     | ready for new job
[2025-10-17 12:51:05] 2025-10-17 10:50:11,909 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-17 12:51:05] 2025-10-17 10:50:11,911 | INFO     | ***************************************
[2025-10-17 12:51:05] 2025-10-17 10:50:11,912 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-17 12:51:05] 2025-10-17 10:50:11,912 | INFO     | ***************************************
[2025-10-17 12:51:05] 2025-10-17 10:50:11,912 | INFO     | 
[2025-10-17 12:51:05] 2025-10-17 10:50:11,912 | INFO     | pilot is running in a VM
[2025-10-17 12:51:05] 2025-10-17 10:50:11,912 | INFO     | architecture information:
[2025-10-17 12:51:05] 2025-10-17 10:50:11,927 | INFO     | executing command: cat /etc/os-release
[2025-10-17 12:51:05] 2025-10-17 10:50:12,069 | INFO     | cat /etc/os-release:
[2025-10-17 12:51:05] NAME="CentOS Linux"
[2025-10-17 12:51:05] VERSION="7 (Core)"
[2025-10-17 12:51:05] ID="centos"
[2025-10-17 12:51:05] ID_LIKE="rhel fedora"
[2025-10-17 12:51:05] VERSION_ID="7"
[2025-10-17 12:51:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-17 12:51:05] ANSI_COLOR="0;31"
[2025-10-17 12:51:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-17 12:51:05] HOME_URL="https://www.centos.org/"
[2025-10-17 12:51:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-17 12:51:05] 
[2025-10-17 12:51:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-17 12:51:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-17 12:51:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-17 12:51:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-17 12:51:05] 
[2025-10-17 12:51:05] 2025-10-17 10:50:12,069 | INFO     | ***************************************
[2025-10-17 12:51:05] 2025-10-17 10:50:12,572 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-10-17 12:51:05] 2025-10-17 10:50:12,843 | INFO     | sufficient remaining disk space (496434675712 B)
[2025-10-17 12:51:05] 2025-10-17 10:50:12,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-17 12:51:05] 2025-10-17 10:50:12,843 | INFO     | current server update state: UPDATING_FINAL
[2025-10-17 12:51:05] 2025-10-17 10:50:12,843 | INFO     | update_server=False
[2025-10-17 12:51:05] 2025-10-17 10:50:12,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-17 12:51:05] 2025-10-17 10:50:12,957 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-17 12:51:05] 2025-10-17 10:50:12,957 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-17 12:51:05] 2025-10-17 10:50:12,958 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-17 12:51:05] 2025-10-17 10:50:12,958 | INFO     | will abort loop
[2025-10-17 12:51:05] 2025-10-17 10:50:12,987 | INFO     | all data control threads have been joined
[2025-10-17 12:51:05] 2025-10-17 10:50:13,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-17 12:51:05] 2025-10-17 10:50:13,817 | INFO     | all payload control threads have been joined
[2025-10-17 12:51:05] 2025-10-17 10:50:13,849 | INFO     | [job] retrieve thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:13,963 | INFO     | [job] job monitor thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:13,993 | INFO     | [data] control thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:14,018 | INFO     | [data] copytool_in thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:14,064 | INFO     | all job control threads have been joined
[2025-10-17 12:51:05] 2025-10-17 10:50:14,177 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:14,235 | INFO     | [job] create_data_payload thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:14,297 | INFO     | [job] validate thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:14,301 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-17 12:51:05] 2025-10-17 10:50:14,823 | INFO     | [payload] control thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:14,847 | INFO     | [payload] validate_pre thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:14,966 | INFO     | [payload] failed_post thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:15,029 | INFO     | [data] copytool_out thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:15,069 | INFO     | [job] control thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:15,145 | INFO     | [payload] execute_payloads thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:15,306 | INFO     | [job] queue monitor thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:15,444 | INFO     | [payload] validate_post thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:16,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-17 12:51:05] 2025-10-17 10:50:20,184 | INFO     | [data] queue_monitor thread has finished
[2025-10-17 12:51:05] 2025-10-17 10:50:42,868 | INFO     | PID=12135 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-17 12:51:05] 2025-10-17 10:50:42,869 | INFO     | .. there are 9 such processes running
[2025-10-17 12:51:05] 2025-10-17 10:50:42,870 | INFO     | found 0 job(s) in 20 queues
[2025-10-17 12:51:05] 2025-10-17 10:50:42,870 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-17 12:51:05] 2025-10-17 10:50:42,870 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-17 12:51:05] 2025-10-17 10:50:55,638 | INFO     | [monitor] cgroup control has ended
[2025-10-17 12:51:05] 2025-10-17 10:50:56,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663916263232)>', '<ExcThread(monitor, started 140663618246400)>']
[2025-10-17 12:51:05] 2025-10-17 10:50:56,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-17 12:51:05] 2025-10-17 10:50:56,956 | INFO     | [monitor] control thread has ended
[2025-10-17 12:51:05] 2025-10-17 10:51:01,890 | INFO     | all workflow threads have been joined
[2025-10-17 12:51:05] 2025-10-17 10:51:01,890 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-17 12:51:05] 2025-10-17 10:51:01,891 | INFO     | traces error code: 0
[2025-10-17 12:51:05] 2025-10-17 10:51:01,891 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-17 12:51:05] 2025-10-17 10:51:02,240 [wrapper] ==== pilot stdout END ====
[2025-10-17 12:51:05] 2025-10-17 10:51:02,314 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-17 12:51:05] 2025-10-17 10:51:02,421 [wrapper] pilotpid: 12135
[2025-10-17 12:51:05] 2025-10-17 10:51:02,536 [wrapper] Pilot exit status: 0
[2025-10-17 12:51:05] 2025-10-17 10:51:02,940 [wrapper] pandaids: 6846966091
[2025-10-17 12:51:05] 2025-10-17 10:51:03,857 [wrapper] cleanup supervisor_pilot 26432 12136
[2025-10-17 12:51:05] 2025-10-17 10:51:03,911 [wrapper] Test setup, not cleaning
[2025-10-17 12:51:05] 2025-10-17 10:51:04,005 [wrapper] apfmon messages muted
[2025-10-17 12:51:05] 2025-10-17 10:51:04,094 [wrapper] ==== wrapper stdout END ====
[2025-10-17 12:51:05] 2025-10-17 10:51:04,190 [wrapper] ==== wrapper stderr END ====
[2025-10-17 12:51:05]  *** Error codes and diagnostics ***
[2025-10-17 12:51:05]     "exeErrorCode": 0,
[2025-10-17 12:51:05]     "exeErrorDiag": "",
[2025-10-17 12:51:05]     "pilotErrorCode": 0,
[2025-10-17 12:51:05]     "pilotErrorDiag": "",
[2025-10-17 12:51:05]  *** Listing of results directory ***
[2025-10-17 12:51:05] total 429016
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc    557409 Oct 16 08:26 pilot3.tar.gz
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc      5112 Oct 16 08:30 queuedata.json
[2025-10-17 12:51:05] -rwx------. 1 boinc boinc     36292 Oct 16 08:32 runpilot2-wrapper.sh
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc       100 Oct 17 08:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-17 12:51:05] -rwxr-xr-x. 1 boinc boinc      7986 Oct 17 08:24 run_atlas
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc       105 Oct 17 08:24 job.xml
[2025-10-17 12:51:05] -rw-r--r--. 2 boinc boinc 229734036 Oct 17 08:24 EVNT.46776529._000477.pool.root.1
[2025-10-17 12:51:05] -rw-r--r--. 2 boinc boinc     15120 Oct 17 08:24 start_atlas.sh
[2025-10-17 12:51:05] drwxrwx--x. 2 boinc boinc        68 Oct 17 08:24 shared
[2025-10-17 12:51:05] -rw-r--r--. 2 boinc boinc    569686 Oct 17 08:24 input.tar.gz
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc      6393 Oct 17 08:24 init_data.xml
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc         0 Oct 17 08:24 boinc_lockfile
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc      2560 Oct 17 08:25 pandaJob.out
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc    976726 Oct 17 08:28 agis_schedconf.cvmfs.json
[2025-10-17 12:51:05] drwx------. 5 boinc boinc      4096 Oct 17 08:28 pilot3
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc 200501020 Oct 17 12:47 HITS.46776533._012158.pool.root.1
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc       530 Oct 17 12:48 boinc_task_state.xml
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc      1019 Oct 17 12:48 memory_monitor_summary.json
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc   1560740 Oct 17 12:48 agis_ddmendpoints.agis.ALL.json
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc    476249 Oct 17 12:48 log.46776533._012158.job.log.tgz.1
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc      7777 Oct 17 12:50 heartbeat.json
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc        95 Oct 17 12:50 pilot_heartbeat.json
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc      8192 Oct 17 12:50 boinc_mmap_file
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc        28 Oct 17 12:50 wrapper_checkpoint.txt
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc      5071 Oct 17 12:51 pilotlog.txt
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc   2113589 Oct 17 12:51 log.46776533._012158.job.log.1
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc       357 Oct 17 12:51 output.list
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc       620 Oct 17 12:51 runtime_log
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc   2611200 Oct 17 12:51 result.tar.gz
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc      8717 Oct 17 12:51 runtime_log.err
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc       656 Oct 17 12:51 nMKMDmEiWT8n9Rq4apOajLDm4fhM0noT9bVof3QYDm9qXMDm67KpDn.diag
[2025-10-17 12:51:05] -rw-r--r--. 1 boinc boinc     20679 Oct 17 12:51 stderr.txt
[2025-10-17 12:51:05] HITS file was successfully produced:
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc 200501020 Oct 17 12:47 shared/HITS.pool.root.1
[2025-10-17 12:51:05]  *** Contents of shared directory: ***
[2025-10-17 12:51:05] total 423284
[2025-10-17 12:51:05] -rw-r--r--. 2 boinc boinc 229734036 Oct 17 08:24 ATLAS.root_0
[2025-10-17 12:51:05] -rw-r--r--. 2 boinc boinc     15120 Oct 17 08:24 start_atlas.sh
[2025-10-17 12:51:05] -rw-r--r--. 2 boinc boinc    569686 Oct 17 08:24 input.tar.gz
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc 200501020 Oct 17 12:47 HITS.pool.root.1
[2025-10-17 12:51:05] -rw-------. 1 boinc boinc   2611200 Oct 17 12:51 result.tar.gz
12:51:06 (8377): run_atlas exited; CPU time 57439.745629
12:51:06 (8377): called boinc_finish(0)

</stderr_txt>
]]>

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