Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-16 12:22:07 (14696): vboxwrapper version 26210
2025-10-16 12:22:14 (14696): BOINC client version: 8.2.4
2025-10-16 12:22:42 (14696): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-10-16 12:22:54 (14696): Successfully copied 'init_data.xml' to the shared directory.
2025-10-16 12:22:57 (14696): Create VM. (boinc_9ca907111a8f9505, slot#2)
2025-10-16 12:23:26 (14696): Setting Memory Size for VM. (4300MB)
2025-10-16 12:23:26 (14696): Setting CPU Count for VM. (3)
2025-10-16 12:23:27 (14696): Setting Chipset Options for VM.
2025-10-16 12:23:27 (14696): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-16 12:23:27 (14696): Setting Boot Options for VM.
2025-10-16 12:23:28 (14696): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-16 12:23:28 (14696): Enabling VM Network Access.
2025-10-16 12:23:29 (14696): Disabling USB Support for VM.
2025-10-16 12:23:29 (14696): Disabling COM Port Support for VM.
2025-10-16 12:23:29 (14696): Disabling LPT Port Support for VM.
2025-10-16 12:23:30 (14696): Disabling Audio Support for VM.
2025-10-16 12:23:30 (14696): Disabling Clipboard Support for VM.
2025-10-16 12:23:30 (14696): Disabling Drag and Drop Support for VM.
2025-10-16 12:23:31 (14696): Adding storage controller(s) to VM.
2025-10-16 12:23:31 (14696): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-16 12:23:33 (14696): Adding VirtualBox Guest Additions to VM.
2025-10-16 12:23:34 (14696): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-16 12:23:34 (14696): forwarding host port 63962 to guest port 80
2025-10-16 12:23:34 (14696): Enabling remote desktop for VM.
2025-10-16 12:23:35 (14696): Enabling shared directory for VM.
2025-10-16 12:23:36 (14696): Starting VM using VBoxManage interface. (boinc_9ca907111a8f9505, slot#2)
2025-10-16 12:23:46 (14696): Successfully started VM. (PID = '18436')
2025-10-16 12:23:46 (14696): Reporting VM Process ID to BOINC.
2025-10-16 12:23:46 (14696): Guest Log: BIOS: VirtualBox 7.1.10
2025-10-16 12:23:46 (14696): Guest Log: CPUID EDX: 0x178bfbff
2025-10-16 12:23:46 (14696): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-16 12:23:46 (14696): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-16 12:23:46 (14696): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-16 12:23:46 (14696): Detected: Web Application Enabled (http://localhost:63962)
2025-10-16 12:23:46 (14696): Detected: Remote Desktop Enabled (localhost:63964)
2025-10-16 12:23:46 (14696): Preference change detected
2025-10-16 12:23:46 (14696): Setting CPU throttle for VM. (100%)
2025-10-16 12:23:46 (14696): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-16 12:23:48 (14696): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-16 12:23:48 (14696): Guest Log: BIOS: Booting from Hard Disk...
2025-10-16 12:23:51 (14696): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-16 12:23:51 (14696): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-16 12:23:51 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-16 12:24:00 (14696): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-16 12:24:00 (14696): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-16 12:24:11 (14696): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-16 12:24:11 (14696): Guest Log: 00:00:00.000318 main     Log opened 2025-10-16T12:24:09.523714000Z
2025-10-16 12:24:11 (14696): Guest Log: 00:00:00.000563 main     OS Product: Linux
2025-10-16 12:24:11 (14696): Guest Log: 00:00:00.000625 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-16 12:24:11 (14696): Guest Log: 00:00:00.000681 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-16 12:24:11 (14696): Guest Log: 00:00:00.000741 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-16 12:24:11 (14696): Guest Log: 00:00:00.000742 main     Process ID: 1298
2025-10-16 12:24:11 (14696): Guest Log: 00:00:00.000744 main     Package type: LINUX_64BITS_GENERIC
2025-10-16 12:24:11 (14696): Guest Log: 00:00:00.002340 main     5.2.32 r132073 started. Verbose level = 0
2025-10-16 12:24:11 (14696): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-16 12:24:11 (14696): Guest Log: [INFO] Mounting shared directory
2025-10-16 12:24:11 (14696): Guest Log: [INFO] Checking for init_data.xml
2025-10-16 12:24:17 (14696): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-16 12:24:17 (14696): Guest Log: [INFO] Detected branch: prod
2025-10-16 12:24:17 (14696): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-16 12:24:17 (14696): Guest Log: Copying input files
2025-10-16 12:24:20 (14696): Guest Log: Copied input files into RunAtlas.
2025-10-16 12:24:20 (14696): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-16 12:24:20 (14696): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-16 12:24:20 (14696): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-16 12:24:20 (14696): Guest Log: Further information can be found at the LHC@home message board.
2025-10-16 12:24:21 (14696): Guest Log: 00:00:10.005883 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 089 980 000ns (GuestNow=1 760 642 660 618 108 000 ns GuestLast=1 760 617 449 528 128 000 ns fSetTimeLastLoop=true )
2025-10-16 12:25:57 (14696): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-16 12:25:58 (14696): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-16 12:25:58 (14696): Guest Log: 2.6.3.0 1577 1 30144 151790 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-16 12:26:00 (14696): Guest Log: copied the webapp to /var/www
2025-10-16 12:26:00 (14696): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-16 12:26:00 (14696): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-16 12:26:00 (14696): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-16 12:26:00 (14696): Guest Log:  *** Starting ATLAS job. (PandaID=6847315311 taskID=46771637) ***
2025-10-16 14:27:53 (14696): Status Report: Elapsed Time: '6000.518501'
2025-10-16 14:27:53 (14696): Status Report: CPU Time: '19731.984375'
2025-10-16 16:40:44 (14696): Status Report: Elapsed Time: '12001.220909'
2025-10-16 16:40:45 (14696): Status Report: CPU Time: '43443.734375'
2025-10-16 18:55:39 (14696): Status Report: Elapsed Time: '18001.251444'
2025-10-16 18:55:39 (14696): Status Report: CPU Time: '67514.015625'
2025-10-16 21:12:50 (14696): Status Report: Elapsed Time: '24001.742939'
2025-10-16 21:12:50 (14696): Status Report: CPU Time: '92013.015625'
2025-10-16 23:16:02 (14696): Guest Log:  *** Job finished ***
2025-10-16 23:16:02 (14696): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:15:55,675 | INFO     | PID=5982 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:15:55,677 | INFO     | found 0 job(s) in 20 queues
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:15:55,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:15:55,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:15:55,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:15:55,677 | INFO     | [monitor] control thread has ended
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,497 | INFO     | all workflow threads have been joined
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,497 | INFO     | end of generic workflow (traces error code: 0)
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,497 | INFO     | traces error code: 0
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,498 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,642 [wrapper] ==== pilot stdout END ====
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,649 [wrapper] ==== wrapper stdout RESUME ====
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,656 [wrapper] pilotpid: 5982
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,663 [wrapper] Pilot exit status: 0
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,760 [wrapper] pandaids: 6847315311
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,811 [wrapper] cleanup supervisor_pilot 20264 5983
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,818 [wrapper] Test setup, not cleaning
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,825 [wrapper] apfmon messages muted
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,832 [wrapper] ==== wrapper stdout END ====
2025-10-16 23:16:02 (14696): Guest Log: 2025-10-17 06:16:00,839 [wrapper] ==== wrapper stderr END ====
2025-10-16 23:16:02 (14696): Guest Log:  *** Error codes and diagnostics ***
2025-10-16 23:16:02 (14696): Guest Log:     "exeErrorCode": 0,
2025-10-16 23:16:02 (14696): Guest Log:     "exeErrorDiag": "",
2025-10-16 23:16:02 (14696): Guest Log:     "pilotErrorCode": 0,
2025-10-16 23:16:02 (14696): Guest Log:     "pilotErrorDiag": "",
2025-10-16 23:16:02 (14696): Guest Log:  *** Listing of results directory ***
2025-10-16 23:16:02 (14696): Guest Log: total 219944
2025-10-16 23:16:02 (14696): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 16 14:41 pilot3.tar.gz
2025-10-16 23:16:02 (14696): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 16 14:43 queuedata.json
2025-10-16 23:16:02 (14696): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 16 14:43 runpilot2-wrapper.sh
2025-10-16 23:16:02 (14696): Guest Log: -rwxr-xr-x. 1 atlas atlas      8642 Oct 16 19:24 init_data.xml
2025-10-16 23:16:02 (14696): Guest Log: -rwxr-xr-x. 1 atlas atlas    569679 Oct 16 19:24 input.tar.gz
2025-10-16 23:16:02 (14696): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 16 19:24 start_atlas.sh
2025-10-16 23:16:02 (14696): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 16 19:24 EVNT.46771634._000652.pool.root.1 -> /data/./ATLAS.root_0
2025-10-16 23:16:02 (14696): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Oct 16 19:26 pandaJob.out
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas    976761 Oct 16 19:27 agis_schedconf.cvmfs.json
2025-10-16 23:16:02 (14696): Guest Log: drwx------. 5 atlas atlas      4096 Oct 16 19:27 pilot3
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas 209712085 Oct 17 06:13 HITS.46771637._011881.pool.root.1
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas      1031 Oct 17 06:14 memory_monitor_summary.json
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 17 06:14 agis_ddmendpoints.agis.ALL.json
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas    712079 Oct 17 06:14 log.46771637._011881.job.log.tgz.1
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas      7788 Oct 17 06:15 heartbeat.json
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas        95 Oct 17 06:15 pilot_heartbeat.json
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 17 06:16 pilotlog.txt
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas   5126310 Oct 17 06:16 log.46771637._011881.job.log.1
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas       357 Oct 17 06:16 output.list
2025-10-16 23:16:02 (14696): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 17 06:16 runtime_log
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas   5857280 Oct 17 06:16 result.tar.gz
2025-10-16 23:16:02 (14696): Guest Log: -rw-r--r--. 1 atlas atlas      8621 Oct 17 06:16 runtime_log.err
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas       657 Oct 17 06:16 eRuKDmVNeT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmXTYMDmBup0Go.diag
2025-10-16 23:16:02 (14696): Guest Log: Looking for outputfile HITS.46771637._011881.pool.root.1
2025-10-16 23:16:02 (14696): Guest Log: HITS file was successfully produced
2025-10-16 23:16:02 (14696): Guest Log: -rw-------. 1 atlas atlas 209712085 Oct 17 06:13 /home/atlas/RunAtlas/HITS.46771637._011881.pool.root.1
2025-10-16 23:16:04 (14696): Guest Log: Successfully finished the ATLAS job!
2025-10-16 23:16:04 (14696): Guest Log: Copying the results back to the shared directory!
2025-10-16 23:16:04 (14696): Guest Log:  *** Contents of shared directory: ***
2025-10-16 23:16:04 (14696): Guest Log: total 431916
2025-10-16 23:16:04 (14696): Guest Log: -rwxrwxrwx. 1 root root 226105406 Oct 16 19:22 ATLAS.root_0
2025-10-16 23:16:04 (14696): Guest Log: -rwxrwxrwx. 1 root root 209712085 Oct 17 06:16 HITS.pool.root.1
2025-10-16 23:16:04 (14696): Guest Log: -rwxrwxrwx. 1 root root      8642 Oct 16 19:22 init_data.xml
2025-10-16 23:16:04 (14696): Guest Log: -rwxrwxrwx. 1 root root    569679 Oct 16 19:09 input.tar.gz
2025-10-16 23:16:04 (14696): Guest Log: -rwxrwxrwx. 1 root root   5857280 Oct 17 06:16 result.tar.gz
2025-10-16 23:16:04 (14696): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 16 19:09 start_atlas.sh
2025-10-16 23:16:04 (14696): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-16 23:16:04 (14696): VM Completion File Detected.
2025-10-16 23:16:04 (14696): Powering off VM.
2025-10-16 23:16:07 (14696): Successfully stopped VM.
2025-10-16 23:16:07 (14696): Deregistering VM. (boinc_9ca907111a8f9505, slot#2)
2025-10-16 23:16:07 (14696): Removing network bandwidth throttle group from VM.
2025-10-16 23:16:07 (14696): Removing VM from VirtualBox.
2025-10-16 23:16:13 (14696): called boinc_finish(0)

</stderr_txt>
]]>

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