Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:06:52 (26527): wrapper (7.7.26015): starting
03:06:52 (26527): wrapper: running run_atlas (--nthreads 8)
[2025-10-17 03:06:52] Arguments: --nthreads 8
[2025-10-17 03:06:52] Threads: 8
[2025-10-17 03:06:52] Checking for CVMFS
[2025-10-17 03:06:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-17 03:06:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-17 03:06:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-17 03:06:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-17 03:06:55] 2.11.2.0 26884 226942 142620 151797 3 162 21553037 25165824 4632 130560 0 117607558 99.880 70616723 3137 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-17 03:06:55] CVMFS is ok
[2025-10-17 03:06:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-17 03:06:55] Checking for apptainer binary...
[2025-10-17 03:06:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-17 03:06:55] Running /usr/bin/apptainer --version
[2025-10-17 03:06:55] apptainer version 1.3.2-1.el7
[2025-10-17 03:06:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-17 03:07:00] cg-vwn403.simple-grid.lan
[2025-10-17 03:07:00] apptainer works
[2025-10-17 03:07:00] Set ATHENA_PROC_NUMBER=8
[2025-10-17 03:07:00] Set ATHENA_CORE_NUMBER=8
[2025-10-17 03:07:00] Starting ATLAS job with PandaID=6846962548
[2025-10-17 03:07:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-17 07:32:39]  *** The last 200 lines of the pilot log: ***
[2025-10-17 07:32:39] 2025-10-17 05:31:31,631 | INFO     | mean x: 1760671440.0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,632 | INFO     | mean y: 2516856.08097166
[2025-10-17 07:32:39] 2025-10-17 05:31:31,632 | INFO     | -- intersect: 12013503967.282066
[2025-10-17 07:32:39] 2025-10-17 05:31:31,632 | INFO     | intersect: 12013503967.282066
[2025-10-17 07:32:39] 2025-10-17 05:31:31,632 | INFO     | chi2: 2.9797521288813673
[2025-10-17 07:32:39] 2025-10-17 05:31:31,633 | INFO     | sum of square deviations: 4394577280.5
[2025-10-17 07:32:39] 2025-10-17 05:31:31,634 | INFO     | sum of deviations: -14605022142.500004
[2025-10-17 07:32:39] 2025-10-17 05:31:31,635 | INFO     | mean x: 1760671287.5
[2025-10-17 07:32:39] 2025-10-17 05:31:31,635 | INFO     | mean y: 2526181.2190082646
[2025-10-17 07:32:39] 2025-10-17 05:31:31,635 | INFO     | -- intersect: 5853974795.788774
[2025-10-17 07:32:39] 2025-10-17 05:31:31,635 | INFO     | intersect: 5853974795.788774
[2025-10-17 07:32:39] 2025-10-17 05:31:31,635 | INFO     | chi2: 2.2197779981523995
[2025-10-17 07:32:39] 2025-10-17 05:31:31,636 | INFO     | current chi2=2.2197779981523995 (change=25.504609036533203 %)
[2025-10-17 07:32:39] 2025-10-17 05:31:31,636 | INFO     | sum of square deviations: 4127772278.0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,638 | INFO     | sum of deviations: -13944652277.000004
[2025-10-17 07:32:39] 2025-10-17 05:31:31,638 | INFO     | mean x: 1760671135.0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,638 | INFO     | mean y: 2526558.7383966246
[2025-10-17 07:32:39] 2025-10-17 05:31:31,638 | INFO     | -- intersect: 5950516200.168401
[2025-10-17 07:32:39] 2025-10-17 05:31:31,638 | INFO     | intersect: 5950516200.168401
[2025-10-17 07:32:39] 2025-10-17 05:31:31,639 | INFO     | chi2: 2.219314705594735
[2025-10-17 07:32:39] 2025-10-17 05:31:31,639 | INFO     | current chi2=2.219314705594735 (change=0.020871121258533767 %)
[2025-10-17 07:32:39] 2025-10-17 05:31:31,639 | INFO     | right removable region: 236
[2025-10-17 07:32:39] 2025-10-17 05:31:31,639 | INFO     | sum of square deviations: 4394577280.5
[2025-10-17 07:32:39] 2025-10-17 05:31:31,641 | INFO     | sum of deviations: -80541953076.5
[2025-10-17 07:32:39] 2025-10-17 05:31:31,641 | INFO     | mean x: 1760671592.5
[2025-10-17 07:32:39] 2025-10-17 05:31:31,642 | INFO     | mean y: 2543356.995867769
[2025-10-17 07:32:39] 2025-10-17 05:31:31,642 | INFO     | -- intersect: 32271387374.25869
[2025-10-17 07:32:39] 2025-10-17 05:31:31,642 | INFO     | intersect: 32271387374.25869
[2025-10-17 07:32:39] 2025-10-17 05:31:31,642 | INFO     | chi2: 1.0226882761125349
[2025-10-17 07:32:39] 2025-10-17 05:31:31,642 | INFO     | current chi2=1.0226882761125349 (change=65.6787466917101 %)
[2025-10-17 07:32:39] 2025-10-17 05:31:31,643 | INFO     | sum of square deviations: 4127772278.0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,645 | INFO     | sum of deviations: -78942246346.0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,645 | INFO     | mean x: 1760671745.0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,645 | INFO     | mean y: 2542411.7426160336
[2025-10-17 07:32:39] 2025-10-17 05:31:31,645 | INFO     | -- intersect: 33674793027.170506
[2025-10-17 07:32:39] 2025-10-17 05:31:31,645 | INFO     | intersect: 33674793027.170506
[2025-10-17 07:32:39] 2025-10-17 05:31:31,645 | INFO     | chi2: 1.0050784972440139
[2025-10-17 07:32:39] 2025-10-17 05:31:31,646 | INFO     | current chi2=1.0050784972440139 (change=1.7219107014172175 %)
[2025-10-17 07:32:39] 2025-10-17 05:31:31,646 | INFO     | left removable region: 20
[2025-10-17 07:32:39] 2025-10-17 05:31:31,646 | INFO     | sum of square deviations: 3124858590.0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,648 | INFO     | sum of deviations: -46114271961.5
[2025-10-17 07:32:39] 2025-10-17 05:31:31,648 | INFO     | mean x: 1760671714.5
[2025-10-17 07:32:39] 2025-10-17 05:31:31,648 | INFO     | mean y: 2544826.337962963
[2025-10-17 07:32:39] 2025-10-17 05:31:31,648 | INFO     | -- intersect: 25985190741.00429
[2025-10-17 07:32:39] 2025-10-17 05:31:31,648 | INFO     | intersect: 25985190741.00429
[2025-10-17 07:32:39] 2025-10-17 05:31:31,649 | INFO     | chi2: 0.19974888392917767
[2025-10-17 07:32:39] 2025-10-17 05:31:31,649 | INFO     | -- intersect: 25985190741.00429
[2025-10-17 07:32:39] 2025-10-17 05:31:31,649 | INFO     | current memory leak: -14.76 B/s (using 216 data points, chi2=0.20)
[2025-10-17 07:32:39] 2025-10-17 05:31:31,650 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-17 07:32:39] 2025-10-17 05:31:31,650 | INFO     | ..............................
[2025-10-17 07:32:39] 2025-10-17 05:31:31,650 | INFO     | . Timing measurements:
[2025-10-17 07:32:39] 2025-10-17 05:31:31,650 | INFO     | . get job = 0 s
[2025-10-17 07:32:39] 2025-10-17 05:31:31,650 | INFO     | . initial setup = 12 s
[2025-10-17 07:32:39] 2025-10-17 05:31:31,650 | INFO     | . payload setup = 115 s
[2025-10-17 07:32:39] 2025-10-17 05:31:31,650 | INFO     | . stage-in = 0 s
[2025-10-17 07:32:39] 2025-10-17 05:31:31,651 | INFO     | . payload execution = 15213 s
[2025-10-17 07:32:39] 2025-10-17 05:31:31,651 | INFO     | . stage-out = 2 s
[2025-10-17 07:32:39] 2025-10-17 05:31:31,651 | INFO     | . log creation = 0 s
[2025-10-17 07:32:39] 2025-10-17 05:31:31,651 | INFO     | ..............................
[2025-10-17 07:32:39] 2025-10-17 05:31:31,790 | INFO     | 
[2025-10-17 07:32:39] 2025-10-17 05:31:31,790 | INFO     | job summary report
[2025-10-17 07:32:39] 2025-10-17 05:31:31,790 | INFO     | --------------------------------------------------
[2025-10-17 07:32:39] 2025-10-17 05:31:31,790 | INFO     | PanDA job id: 6846962548
[2025-10-17 07:32:39] 2025-10-17 05:31:31,790 | INFO     | task id: 46776533
[2025-10-17 07:32:39] 2025-10-17 05:31:31,790 | INFO     | errors: (none)
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | pilot state: finished 
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | transexitcode: 0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | exeerrorcode: 0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | exeerrordiag: 
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | exitcode: 0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | exitmsg: OK
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | cpuconsumptiontime: 57637 s
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | nevents: 400
[2025-10-17 07:32:39] 2025-10-17 05:31:31,791 | INFO     | neventsw: 0
[2025-10-17 07:32:39] 2025-10-17 05:31:31,792 | INFO     | pid: 4538
[2025-10-17 07:32:39] 2025-10-17 05:31:31,792 | INFO     | pgrp: 4538
[2025-10-17 07:32:39] 2025-10-17 05:31:31,792 | INFO     | corecount: 8
[2025-10-17 07:32:39] 2025-10-17 05:31:31,792 | INFO     | event service: False
[2025-10-17 07:32:39] 2025-10-17 05:31:31,792 | INFO     | sizes: {0: 2348102, 1: 2348788, 2: 2348987, 13: 2348987, 23: 2349043, 34: 2349071, 45: 2349227, 56: 2349255, 66: 2349283, 77: 2349311, 88: 2349367, 89: 2349937, 98
[2025-10-17 07:32:39] 2025-10-17 05:31:31,792 | INFO     | --------------------------------------------------
[2025-10-17 07:32:39] 2025-10-17 05:31:31,792 | INFO     | 
[2025-10-17 07:32:39] 2025-10-17 05:31:31,792 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-10-17 07:32:39] 2025-10-17 05:31:32,125 | INFO     | time since job start (15630s) is within the limit (172800.0s)
[2025-10-17 07:32:39] 2025-10-17 05:31:32,401 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,401 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,401 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,401 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,401 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,401 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,401 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,402 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,402 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,402 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,402 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,402 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,402 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,402 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,402 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,403 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,403 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,403 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-17 07:32:39] 2025-10-17 05:31:32,403 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,403 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-17 07:32:39] 2025-10-17 05:31:32,403 | INFO     | job 6846962548 has completed (purged errors)
[2025-10-17 07:32:39] 2025-10-17 05:31:32,403 | INFO     | overall cleanup function is called
[2025-10-17 07:32:39] 2025-10-17 05:31:33,413 | INFO     | --- collectZombieJob: --- 10, [4538]
[2025-10-17 07:32:39] 2025-10-17 05:31:33,413 | INFO     | zombie collector waiting for pid 4538
[2025-10-17 07:32:39] 2025-10-17 05:31:33,413 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-17 07:32:39] 2025-10-17 05:31:33,413 | INFO     | collected zombie processes
[2025-10-17 07:32:39] 2025-10-17 05:31:33,413 | INFO     | will attempt to kill all subprocesses of pid=4538
[2025-10-17 07:32:39] 2025-10-17 05:31:33,544 | INFO     | process IDs to be killed: [4538] (in reverse order)
[2025-10-17 07:32:39] 2025-10-17 05:31:34,095 | WARNING  | found no corresponding commands to process id(s)
[2025-10-17 07:32:39] 2025-10-17 05:31:34,096 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-17 07:32:39] 2025-10-17 05:31:34,099 | INFO     | did not find any defunct processes belonging to 4538
[2025-10-17 07:32:39] 2025-10-17 05:31:34,102 | INFO     | did not find any defunct processes belonging to 4538
[2025-10-17 07:32:39] 2025-10-17 05:31:34,103 | INFO     | ready for new job
[2025-10-17 07:32:39] 2025-10-17 05:31:34,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-17 07:32:39] 2025-10-17 05:31:34,105 | INFO     | ***************************************
[2025-10-17 07:32:39] 2025-10-17 05:31:34,106 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-17 07:32:39] 2025-10-17 05:31:34,106 | INFO     | ***************************************
[2025-10-17 07:32:39] 2025-10-17 05:31:34,106 | INFO     | 
[2025-10-17 07:32:39] 2025-10-17 05:31:34,107 | INFO     | pilot is running in a VM
[2025-10-17 07:32:39] 2025-10-17 05:31:34,107 | INFO     | architecture information:
[2025-10-17 07:32:39] 2025-10-17 05:31:34,121 | INFO     | executing command: cat /etc/os-release
[2025-10-17 07:32:39] 2025-10-17 05:31:34,270 | INFO     | cat /etc/os-release:
[2025-10-17 07:32:39] NAME="CentOS Linux"
[2025-10-17 07:32:39] VERSION="7 (Core)"
[2025-10-17 07:32:39] ID="centos"
[2025-10-17 07:32:39] ID_LIKE="rhel fedora"
[2025-10-17 07:32:39] VERSION_ID="7"
[2025-10-17 07:32:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-17 07:32:39] ANSI_COLOR="0;31"
[2025-10-17 07:32:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-17 07:32:39] HOME_URL="https://www.centos.org/"
[2025-10-17 07:32:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-17 07:32:39] 
[2025-10-17 07:32:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-17 07:32:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-17 07:32:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-17 07:32:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-17 07:32:39] 
[2025-10-17 07:32:39] 2025-10-17 05:31:34,271 | INFO     | ***************************************
[2025-10-17 07:32:39] 2025-10-17 05:31:34,774 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-10-17 07:32:39] 2025-10-17 05:31:35,072 | INFO     | sufficient remaining disk space (496028876800 B)
[2025-10-17 07:32:39] 2025-10-17 05:31:35,073 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-17 07:32:39] 2025-10-17 05:31:35,073 | INFO     | current server update state: UPDATING_FINAL
[2025-10-17 07:32:39] 2025-10-17 05:31:35,073 | INFO     | update_server=False
[2025-10-17 07:32:39] 2025-10-17 05:31:35,073 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-17 07:32:39] 2025-10-17 05:31:35,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-17 07:32:39] 2025-10-17 05:31:35,391 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-17 07:32:39] 2025-10-17 05:31:35,391 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-17 07:32:39] 2025-10-17 05:31:35,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-17 07:32:39] 2025-10-17 05:31:35,391 | INFO     | will abort loop
[2025-10-17 07:32:39] 2025-10-17 05:31:35,574 | INFO     | all payload control threads have been joined
[2025-10-17 07:32:39] 2025-10-17 05:31:35,861 | INFO     | all job control threads have been joined
[2025-10-17 07:32:39] 2025-10-17 05:31:35,968 | INFO     | all data control threads have been joined
[2025-10-17 07:32:39] 2025-10-17 05:31:36,078 | INFO     | [job] retrieve thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:36,182 | INFO     | [job] create_data_payload thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:36,246 | INFO     | [payload] validate_pre thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:36,337 | INFO     | [payload] failed_post thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:36,397 | INFO     | [job] job monitor thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:36,580 | INFO     | [payload] control thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:36,623 | INFO     | [data] copytool_in thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:36,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-17 07:32:39] 2025-10-17 05:31:36,867 | INFO     | [job] control thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:36,974 | INFO     | [data] control thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:37,116 | INFO     | [payload] validate_post thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:37,190 | INFO     | [job] validate thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:37,319 | INFO     | [data] copytool_out thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:37,378 | INFO     | [payload] execute_payloads thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:37,490 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-17 07:32:39] 2025-10-17 05:31:37,810 | INFO     | [job] queue monitor thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:41,498 | INFO     | [data] queue_monitor thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:31:45,495 | INFO     | job.realtimelogging is not enabled
[2025-10-17 07:32:39] 2025-10-17 05:31:46,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-17 07:32:39] 2025-10-17 05:32:04,149 | INFO     | 15644s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-17 07:32:39] 2025-10-17 05:32:05,313 | INFO     | PID=30355 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-17 07:32:39] 2025-10-17 05:32:05,313 | INFO     | .. there are 9 such processes running
[2025-10-17 07:32:39] 2025-10-17 05:32:05,315 | INFO     | found 0 job(s) in 20 queues
[2025-10-17 07:32:39] 2025-10-17 05:32:05,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-17 07:32:39] 2025-10-17 05:32:05,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-17 07:32:39] 2025-10-17 05:32:28,645 | INFO     | [monitor] cgroup control has ended
[2025-10-17 07:32:39] 2025-10-17 05:32:29,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109708302144)>', '<ExcThread(monitor, started 140109273884416)>']
[2025-10-17 07:32:39] 2025-10-17 05:32:30,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-17 07:32:39] 2025-10-17 05:32:30,464 | INFO     | [monitor] control thread has ended
[2025-10-17 07:32:39] 2025-10-17 05:32:34,579 | INFO     | all workflow threads have been joined
[2025-10-17 07:32:39] 2025-10-17 05:32:34,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-17 07:32:39] 2025-10-17 05:32:34,579 | INFO     | traces error code: 0
[2025-10-17 07:32:39] 2025-10-17 05:32:34,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-17 07:32:39] 2025-10-17 05:32:35,022 [wrapper] ==== pilot stdout END ====
[2025-10-17 07:32:39] 2025-10-17 05:32:35,132 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-17 07:32:39] 2025-10-17 05:32:35,240 [wrapper] pilotpid: 30355
[2025-10-17 07:32:39] 2025-10-17 05:32:35,313 [wrapper] Pilot exit status: 0
[2025-10-17 07:32:39] 2025-10-17 05:32:35,771 [wrapper] pandaids: 6846962548
[2025-10-17 07:32:39] 2025-10-17 05:32:36,613 [wrapper] cleanup supervisor_pilot 14217 30356
[2025-10-17 07:32:39] 2025-10-17 05:32:36,647 [wrapper] Test setup, not cleaning
[2025-10-17 07:32:39] 2025-10-17 05:32:36,756 [wrapper] apfmon messages muted
[2025-10-17 07:32:39] 2025-10-17 05:32:36,847 [wrapper] ==== wrapper stdout END ====
[2025-10-17 07:32:39] 2025-10-17 05:32:36,927 [wrapper] ==== wrapper stderr END ====
[2025-10-17 07:32:39]  *** Error codes and diagnostics ***
[2025-10-17 07:32:39]     "exeErrorCode": 0,
[2025-10-17 07:32:39]     "exeErrorDiag": "",
[2025-10-17 07:32:39]     "pilotErrorCode": 0,
[2025-10-17 07:32:39]     "pilotErrorDiag": "",
[2025-10-17 07:32:39]  *** Listing of results directory ***
[2025-10-17 07:32:39] total 434580
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc    557409 Oct 16 06:36 pilot3.tar.gz
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc      5112 Oct 16 07:00 queuedata.json
[2025-10-17 07:32:39] -rwx------. 1 boinc boinc     36292 Oct 16 07:00 runpilot2-wrapper.sh
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc       100 Oct 17 03:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-17 07:32:39] -rwxr-xr-x. 1 boinc boinc      7986 Oct 17 03:06 run_atlas
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc       105 Oct 17 03:06 job.xml
[2025-10-17 07:32:39] -rw-r--r--. 2 boinc boinc 229468617 Oct 17 03:06 EVNT.46776529._000423.pool.root.1
[2025-10-17 07:32:39] drwxrwx--x. 2 boinc boinc        68 Oct 17 03:06 shared
[2025-10-17 07:32:39] -rw-r--r--. 2 boinc boinc    569683 Oct 17 03:06 input.tar.gz
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc      6392 Oct 17 03:06 init_data.xml
[2025-10-17 07:32:39] -rw-r--r--. 2 boinc boinc     15120 Oct 17 03:06 start_atlas.sh
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc         0 Oct 17 03:06 boinc_lockfile
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc      2560 Oct 17 03:07 pandaJob.out
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc    976726 Oct 17 03:10 agis_schedconf.cvmfs.json
[2025-10-17 07:32:39] drwx------. 5 boinc boinc      4096 Oct 17 03:11 pilot3
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc 206508466 Oct 17 07:28 HITS.46776533._010818.pool.root.1
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc       531 Oct 17 07:28 boinc_task_state.xml
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc      1020 Oct 17 07:29 memory_monitor_summary.json
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc   1560740 Oct 17 07:29 agis_ddmendpoints.agis.ALL.json
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc    486479 Oct 17 07:29 log.46776533._010818.job.log.tgz.1
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc      7784 Oct 17 07:31 heartbeat.json
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc        95 Oct 17 07:32 pilot_heartbeat.json
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc        28 Oct 17 07:32 wrapper_checkpoint.txt
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc      8192 Oct 17 07:32 boinc_mmap_file
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc      5259 Oct 17 07:32 pilotlog.txt
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc   2084568 Oct 17 07:32 log.46776533._010818.job.log.1
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc       357 Oct 17 07:32 output.list
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc       620 Oct 17 07:32 runtime_log
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc   2590720 Oct 17 07:32 result.tar.gz
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc       657 Oct 17 07:32 YAiKDmfHVT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrkpNDmxRD6Km.diag
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc      8717 Oct 17 07:32 runtime_log.err
[2025-10-17 07:32:39] -rw-r--r--. 1 boinc boinc     20707 Oct 17 07:32 stderr.txt
[2025-10-17 07:32:39] HITS file was successfully produced:
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc 206508466 Oct 17 07:28 shared/HITS.pool.root.1
[2025-10-17 07:32:39]  *** Contents of shared directory: ***
[2025-10-17 07:32:39] total 428872
[2025-10-17 07:32:39] -rw-r--r--. 2 boinc boinc 229468617 Oct 17 03:06 ATLAS.root_0
[2025-10-17 07:32:39] -rw-r--r--. 2 boinc boinc    569683 Oct 17 03:06 input.tar.gz
[2025-10-17 07:32:39] -rw-r--r--. 2 boinc boinc     15120 Oct 17 03:06 start_atlas.sh
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc 206508466 Oct 17 07:28 HITS.pool.root.1
[2025-10-17 07:32:39] -rw-------. 1 boinc boinc   2590720 Oct 17 07:32 result.tar.gz
07:32:40 (26527): run_atlas exited; CPU time 57834.394633
07:32:40 (26527): called boinc_finish(0)

</stderr_txt>
]]>

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