Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:26:07 (410505): wrapper (7.7.26015): starting
15:26:07 (410505): wrapper: running run_atlas (--nthreads 4)
[2025-10-16 15:26:07] Arguments: --nthreads 4
[2025-10-16 15:26:07] Threads: 4
[2025-10-16 15:26:07] Checking for CVMFS
[2025-10-16 15:26:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-16 15:26:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-16 15:26:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-16 15:26:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-16 15:26:07] 2.9.2.0 85452 670 84468 151776 3 188 22882687 36864000 0 130560 0 862146 99.992 30806 1365 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-16 15:26:07] CVMFS is ok
[2025-10-16 15:26:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-16 15:26:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-16 15:26:07] Further information can be found at the LHC@home message board.
[2025-10-16 15:26:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-16 15:26:07] Checking for apptainer binary...
[2025-10-16 15:26:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-16 15:26:07] Running /usr/bin/apptainer --version
[2025-10-16 15:26:07] apptainer version 1.4.1-1.1
[2025-10-16 15:26:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-16 15:26:07] thA373a
[2025-10-16 15:26:07] apptainer works
[2025-10-16 15:26:07] Set ATHENA_PROC_NUMBER=4
[2025-10-16 15:26:07] Set ATHENA_CORE_NUMBER=4
[2025-10-16 15:26:07] Starting ATLAS job with PandaID=6846963075
[2025-10-16 15:26:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-16 16:41:26]  *** The last 200 lines of the pilot log: ***
[2025-10-16 16:41:26] 2025-10-16 14:41:06,912 | INFO     | job 6846963075 has completed (purged errors)
[2025-10-16 16:41:26] 2025-10-16 14:41:06,912 | INFO     | overall cleanup function is called
[2025-10-16 16:41:26] 2025-10-16 14:41:07,919 | INFO     | --- collectZombieJob: --- 10, [420867]
[2025-10-16 16:41:26] 2025-10-16 14:41:07,919 | INFO     | zombie collector waiting for pid 420867
[2025-10-16 16:41:26] 2025-10-16 14:41:07,920 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-16 16:41:26] 2025-10-16 14:41:07,920 | INFO     | collected zombie processes
[2025-10-16 16:41:26] 2025-10-16 14:41:07,920 | INFO     | will attempt to kill all subprocesses of pid=420867
[2025-10-16 16:41:26] 2025-10-16 14:41:07,971 | INFO     | process IDs to be killed: [420867] (in reverse order)
[2025-10-16 16:41:26] 2025-10-16 14:41:08,005 | WARNING  | found no corresponding commands to process id(s)
[2025-10-16 16:41:26] 2025-10-16 14:41:08,005 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-16 16:41:26] 2025-10-16 14:41:08,007 | INFO     | did not find any defunct processes belonging to 420867
[2025-10-16 16:41:26] 2025-10-16 14:41:08,009 | INFO     | did not find any defunct processes belonging to 420867
[2025-10-16 16:41:26] 2025-10-16 14:41:08,009 | INFO     | ready for new job
[2025-10-16 16:41:26] 2025-10-16 14:41:08,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-16 16:41:26] 2025-10-16 14:41:08,010 | INFO     | ***************************************
[2025-10-16 16:41:26] 2025-10-16 14:41:08,010 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-16 16:41:26] 2025-10-16 14:41:08,010 | INFO     | ***************************************
[2025-10-16 16:41:26] 2025-10-16 14:41:08,010 | INFO     | 
[2025-10-16 16:41:26] 2025-10-16 14:41:08,010 | INFO     | architecture information:
[2025-10-16 16:41:26] 2025-10-16 14:41:08,011 | INFO     | executing command: cat /etc/os-release
[2025-10-16 16:41:26] 2025-10-16 14:41:08,024 | INFO     | cat /etc/os-release:
[2025-10-16 16:41:26] NAME="CentOS Linux"
[2025-10-16 16:41:26] VERSION="7 (Core)"
[2025-10-16 16:41:26] ID="centos"
[2025-10-16 16:41:26] ID_LIKE="rhel fedora"
[2025-10-16 16:41:26] VERSION_ID="7"
[2025-10-16 16:41:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-16 16:41:26] ANSI_COLOR="0;31"
[2025-10-16 16:41:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-16 16:41:26] HOME_URL="https://www.centos.org/"
[2025-10-16 16:41:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-16 16:41:26] 
[2025-10-16 16:41:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-16 16:41:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-16 16:41:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-16 16:41:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-16 16:41:26] 
[2025-10-16 16:41:26] 2025-10-16 14:41:08,024 | INFO     | ***************************************
[2025-10-16 16:41:26] 2025-10-16 14:41:08,527 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-16 16:41:26] 2025-10-16 14:41:08,544 | INFO     | sufficient remaining disk space (337251401728 B)
[2025-10-16 16:41:26] 2025-10-16 14:41:08,544 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-16 16:41:26] 2025-10-16 14:41:08,544 | INFO     | current server update state: UPDATING_FINAL
[2025-10-16 16:41:26] 2025-10-16 14:41:08,544 | INFO     | update_server=False
[2025-10-16 16:41:26] 2025-10-16 14:41:08,544 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-16 16:41:26] 2025-10-16 14:41:08,544 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-16 16:41:26] 2025-10-16 14:41:08,544 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-16 16:41:26] 2025-10-16 14:41:08,544 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-16 16:41:26] 2025-10-16 14:41:08,545 | INFO     | found 0 job(s) in 20 queues
[2025-10-16 16:41:26] 2025-10-16 14:41:08,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-16 16:41:26] 2025-10-16 14:41:08,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-16 16:41:26] 2025-10-16 14:41:09,153 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-16 16:41:26] 2025-10-16 14:41:09,153 | INFO     | aborting loop
[2025-10-16 16:41:26] 2025-10-16 14:41:09,187 | INFO     | all data control threads have been joined
[2025-10-16 16:41:26] 2025-10-16 14:41:09,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-16 16:41:26] 2025-10-16 14:41:09,550 | INFO     | [job] retrieve thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:09,550 | INFO     | [job] queue monitor thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:09,559 | INFO     | all job control threads have been joined
[2025-10-16 16:41:26] 2025-10-16 14:41:09,587 | INFO     | [payload] execute_payloads thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:09,630 | INFO     | [data] copytool_in thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:09,939 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:09,962 | INFO     | all payload control threads have been joined
[2025-10-16 16:41:26] 2025-10-16 14:41:10,126 | INFO     | [payload] validate_post thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:10,159 | INFO     | [job] job monitor thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:10,193 | INFO     | [data] control thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:10,565 | INFO     | [job] control thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:10,670 | INFO     | [job] validate thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:10,792 | INFO     | [job] create_data_payload thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:10,852 | INFO     | [payload] validate_pre thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:10,930 | INFO     | [payload] failed_post thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:10,968 | INFO     | [payload] control thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:11,531 | INFO     | [data] copytool_out thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:12,551 | INFO     | [data] queue_monitor thread has finished
[2025-10-16 16:41:26] 2025-10-16 14:41:13,629 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-16 16:41:26] 2025-10-16 14:41:19,953 | INFO     | [monitor] cgroup control has ended
[2025-10-16 16:41:26] 2025-10-16 14:41:20,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140708098959168)>', '<ExcThread(monitor, started 140707608123136)>']
[2025-10-16 16:41:26] 2025-10-16 14:41:21,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-16 16:41:26] 2025-10-16 14:41:21,613 | INFO     | [monitor] control thread has ended
[2025-10-16 16:41:26] 2025-10-16 14:41:25,984 | INFO     | all workflow threads have been joined
[2025-10-16 16:41:26] 2025-10-16 14:41:25,984 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-16 16:41:26] 2025-10-16 14:41:25,985 | INFO     | traces error code: 0
[2025-10-16 16:41:26] 2025-10-16 14:41:25,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-16 16:41:26] 2025-10-16 14:41:26,064 [wrapper] ==== pilot stdout END ====
[2025-10-16 16:41:26] 2025-10-16 14:41:26,068 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-16 16:41:26] 2025-10-16 14:41:26,072 [wrapper] pilotpid: 414295
[2025-10-16 16:41:26] 2025-10-16 14:41:26,076 [wrapper] Pilot exit status: 0
[2025-10-16 16:41:26] 2025-10-16 14:41:26,087 [wrapper] pandaids: 6846963075
[2025-10-16 16:41:26] 2025-10-16 14:41:26,108 [wrapper] cleanup supervisor_pilot  435780 414296
[2025-10-16 16:41:26] 2025-10-16 14:41:26,112 [wrapper] Test setup, not cleaning
[2025-10-16 16:41:26] 2025-10-16 14:41:26,116 [wrapper] apfmon messages muted
[2025-10-16 16:41:26] 2025-10-16 14:41:26,119 [wrapper] ==== wrapper stdout END ====
[2025-10-16 16:41:26] 2025-10-16 14:41:26,122 [wrapper] ==== wrapper stderr END ====
[2025-10-16 16:41:26]  *** Error codes and diagnostics ***
[2025-10-16 16:41:26]     "exeErrorCode": 0,
[2025-10-16 16:41:26]     "exeErrorDiag": "",
[2025-10-16 16:41:26]     "pilotErrorCode": 0,
[2025-10-16 16:41:26]     "pilotErrorDiag": "",
[2025-10-16 16:41:26]  *** Listing of results directory ***
[2025-10-16 16:41:26] total 420924
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc    557409 Oct 16 06:36 pilot3.tar.gz
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc      5112 Oct 16 07:15 queuedata.json
[2025-10-16 16:41:26] -rwx------ 1 boinc boinc     36292 Oct 16 07:18 runpilot2-wrapper.sh
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc       100 Oct 16 15:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-16 16:41:26] -rwxr-xr-x 1 boinc boinc      7986 Oct 16 15:26 run_atlas
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc       105 Oct 16 15:26 job.xml
[2025-10-16 16:41:26] -rw-r--r-- 2 boinc boinc 225460751 Oct 16 15:26 EVNT.46776529._000436.pool.root.1
[2025-10-16 16:41:26] -rw-r--r-- 2 boinc boinc    569684 Oct 16 15:26 input.tar.gz
[2025-10-16 16:41:26] -rw-r--r-- 2 boinc boinc     15120 Oct 16 15:26 start_atlas.sh
[2025-10-16 16:41:26] drwxrwx--x 2 boinc boinc      4096 Oct 16 15:26 shared
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc         0 Oct 16 15:26 boinc_setup_complete
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc      6376 Oct 16 15:26 init_data.xml
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc         0 Oct 16 15:26 boinc_lockfile
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc      2560 Oct 16 15:26 pandaJob.out
[2025-10-16 16:41:26] -rw------- 1 boinc boinc    976761 Oct 16 15:26 agis_schedconf.cvmfs.json
[2025-10-16 16:41:26] -rw------- 1 boinc boinc   1560740 Oct 16 15:26 agis_ddmendpoints.agis.ALL.json
[2025-10-16 16:41:26] drwx------ 5 boinc boinc      4096 Oct 16 15:26 pilot3
[2025-10-16 16:41:26] -rw------- 1 boinc boinc        95 Oct 16 16:40 pilot_heartbeat.json
[2025-10-16 16:41:26] -rw------- 1 boinc boinc 199805555 Oct 16 16:40 HITS.46776533._011135.pool.root.1
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc       529 Oct 16 16:40 boinc_task_state.xml
[2025-10-16 16:41:26] -rw------- 1 boinc boinc      1019 Oct 16 16:40 memory_monitor_summary.json
[2025-10-16 16:41:26] -rw------- 1 boinc boinc    267524 Oct 16 16:41 log.46776533._011135.job.log.tgz.1
[2025-10-16 16:41:26] -rw------- 1 boinc boinc      7764 Oct 16 16:41 heartbeat.json
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc      8192 Oct 16 16:41 boinc_mmap_file
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc        27 Oct 16 16:41 wrapper_checkpoint.txt
[2025-10-16 16:41:26] -rw------- 1 boinc boinc      4556 Oct 16 16:41 pilotlog.txt
[2025-10-16 16:41:26] -rw------- 1 boinc boinc    663156 Oct 16 16:41 log.46776533._011135.job.log.1
[2025-10-16 16:41:26] -rw------- 1 boinc boinc       357 Oct 16 16:41 output.list
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc       620 Oct 16 16:41 runtime_log
[2025-10-16 16:41:26] -rw------- 1 boinc boinc    952320 Oct 16 16:41 result.tar.gz
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc      8782 Oct 16 16:41 runtime_log.err
[2025-10-16 16:41:26] -rw------- 1 boinc boinc       659 Oct 16 16:41 4ShLDmaYVT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSopNDm7OTGGn.diag
[2025-10-16 16:41:26] -rw-r--r-- 1 boinc boinc     10821 Oct 16 16:41 stderr.txt
[2025-10-16 16:41:26] HITS file was successfully produced:
[2025-10-16 16:41:26] -rw------- 1 boinc boinc 199805555 Oct 16 16:40 shared/HITS.pool.root.1
[2025-10-16 16:41:26]  *** Contents of shared directory: ***
[2025-10-16 16:41:26] total 416820
[2025-10-16 16:41:26] -rw-r--r-- 2 boinc boinc 225460751 Oct 16 15:26 ATLAS.root_0
[2025-10-16 16:41:26] -rw-r--r-- 2 boinc boinc    569684 Oct 16 15:26 input.tar.gz
[2025-10-16 16:41:26] -rw-r--r-- 2 boinc boinc     15120 Oct 16 15:26 start_atlas.sh
[2025-10-16 16:41:26] -rw------- 1 boinc boinc 199805555 Oct 16 16:40 HITS.pool.root.1
[2025-10-16 16:41:26] -rw------- 1 boinc boinc    952320 Oct 16 16:41 result.tar.gz
16:41:27 (410505): run_atlas exited; CPU time 16903.086266
16:41:27 (410505): called boinc_finish(0)

</stderr_txt>
]]>

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