Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:18:45 (313431): wrapper (7.7.26015): starting
11:18:45 (313431): wrapper: running run_atlas (--nthreads 4)
[2025-10-16 11:18:45] Arguments: --nthreads 4
[2025-10-16 11:18:45] Threads: 4
[2025-10-16 11:18:45] Checking for CVMFS
[2025-10-16 11:18:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-16 11:18:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-16 11:18:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-16 11:18:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-16 11:18:46] 2.9.2.0 85452 422 77436 151768 2 56 22830792 36864000 0 130560 0 606459 99.991 21409 1393 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-16 11:18:46] CVMFS is ok
[2025-10-16 11:18:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-16 11:18:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-16 11:18:46] Further information can be found at the LHC@home message board.
[2025-10-16 11:18:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-16 11:18:46] Checking for apptainer binary...
[2025-10-16 11:18:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-16 11:18:46] Running /usr/bin/apptainer --version
[2025-10-16 11:18:46] apptainer version 1.4.1-1.1
[2025-10-16 11:18:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-16 11:18:46] thA373a
[2025-10-16 11:18:46] apptainer works
[2025-10-16 11:18:46] Set ATHENA_PROC_NUMBER=4
[2025-10-16 11:18:46] Set ATHENA_CORE_NUMBER=4
[2025-10-16 11:18:46] Starting ATLAS job with PandaID=6846952798
[2025-10-16 11:18:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-16 12:37:12]  *** The last 200 lines of the pilot log: ***
[2025-10-16 12:37:12] 2025-10-16 10:36:39,434 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-16 12:37:12] 2025-10-16 10:36:39,434 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-16 12:37:12] 2025-10-16 10:36:39,435 | INFO     | job 6846952798 has completed (purged errors)
[2025-10-16 12:37:12] 2025-10-16 10:36:39,435 | INFO     | overall cleanup function is called
[2025-10-16 12:37:12] 2025-10-16 10:36:40,441 | INFO     | --- collectZombieJob: --- 10, [323806]
[2025-10-16 12:37:12] 2025-10-16 10:36:40,441 | INFO     | zombie collector waiting for pid 323806
[2025-10-16 12:37:12] 2025-10-16 10:36:40,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-16 12:37:12] 2025-10-16 10:36:40,441 | INFO     | collected zombie processes
[2025-10-16 12:37:12] 2025-10-16 10:36:40,442 | INFO     | will attempt to kill all subprocesses of pid=323806
[2025-10-16 12:37:12] 2025-10-16 10:36:40,494 | INFO     | process IDs to be killed: [323806] (in reverse order)
[2025-10-16 12:37:12] 2025-10-16 10:36:40,527 | WARNING  | found no corresponding commands to process id(s)
[2025-10-16 12:37:12] 2025-10-16 10:36:40,527 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-16 12:37:12] 2025-10-16 10:36:40,529 | INFO     | did not find any defunct processes belonging to 323806
[2025-10-16 12:37:12] 2025-10-16 10:36:40,531 | INFO     | did not find any defunct processes belonging to 323806
[2025-10-16 12:37:12] 2025-10-16 10:36:40,531 | INFO     | ready for new job
[2025-10-16 12:37:12] 2025-10-16 10:36:40,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-16 12:37:12] 2025-10-16 10:36:40,532 | INFO     | ***************************************
[2025-10-16 12:37:12] 2025-10-16 10:36:40,532 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-16 12:37:12] 2025-10-16 10:36:40,532 | INFO     | ***************************************
[2025-10-16 12:37:12] 2025-10-16 10:36:40,532 | INFO     | 
[2025-10-16 12:37:12] 2025-10-16 10:36:40,532 | INFO     | architecture information:
[2025-10-16 12:37:12] 2025-10-16 10:36:40,532 | INFO     | executing command: cat /etc/os-release
[2025-10-16 12:37:12] 2025-10-16 10:36:40,545 | INFO     | cat /etc/os-release:
[2025-10-16 12:37:12] NAME="CentOS Linux"
[2025-10-16 12:37:12] VERSION="7 (Core)"
[2025-10-16 12:37:12] ID="centos"
[2025-10-16 12:37:12] ID_LIKE="rhel fedora"
[2025-10-16 12:37:12] VERSION_ID="7"
[2025-10-16 12:37:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-16 12:37:12] ANSI_COLOR="0;31"
[2025-10-16 12:37:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-16 12:37:12] HOME_URL="https://www.centos.org/"
[2025-10-16 12:37:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-16 12:37:12] 
[2025-10-16 12:37:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-16 12:37:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-16 12:37:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-16 12:37:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-16 12:37:12] 
[2025-10-16 12:37:12] 2025-10-16 10:36:40,546 | INFO     | ***************************************
[2025-10-16 12:37:12] 2025-10-16 10:36:41,049 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-16 12:37:12] 2025-10-16 10:36:41,064 | INFO     | sufficient remaining disk space (337736892416 B)
[2025-10-16 12:37:12] 2025-10-16 10:36:41,065 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-16 12:37:12] 2025-10-16 10:36:41,065 | INFO     | current server update state: UPDATING_FINAL
[2025-10-16 12:37:12] 2025-10-16 10:36:41,065 | INFO     | update_server=False
[2025-10-16 12:37:12] 2025-10-16 10:36:41,065 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-16 12:37:12] 2025-10-16 10:36:41,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-16 12:37:12] 2025-10-16 10:36:41,065 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-16 12:37:12] 2025-10-16 10:36:41,762 | INFO     | all payload control threads have been joined
[2025-10-16 12:37:12] 2025-10-16 10:36:41,914 | INFO     | all data control threads have been joined
[2025-10-16 12:37:12] 2025-10-16 10:36:41,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-16 12:37:12] 2025-10-16 10:36:41,972 | INFO     | aborting loop
[2025-10-16 12:37:12] 2025-10-16 10:36:42,070 | INFO     | [job] retrieve thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:42,071 | INFO     | [job] queue monitor thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:42,084 | INFO     | [payload] validate_pre thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:42,202 | INFO     | [job] create_data_payload thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:42,338 | INFO     | all job control threads have been joined
[2025-10-16 12:37:12] 2025-10-16 10:36:42,384 | INFO     | [payload] execute_payloads thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:42,490 | INFO     | [data] copytool_in thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:42,662 | INFO     | [payload] failed_post thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:42,768 | INFO     | [payload] control thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:42,920 | INFO     | [data] control thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:42,978 | INFO     | [job] job monitor thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:43,071 | INFO     | [data] copytool_out thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:43,201 | INFO     | [payload] validate_post thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:43,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-16 12:37:12] 2025-10-16 10:36:43,344 | INFO     | [job] control thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:43,386 | INFO     | [job] validate thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:47,329 | INFO     | [data] queue_monitor thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:51,711 | INFO     | job.realtimelogging is not enabled
[2025-10-16 12:37:12] 2025-10-16 10:36:52,717 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-16 12:37:12] 2025-10-16 10:36:59,150 | INFO     | [monitor] cgroup control has ended
[2025-10-16 12:37:12] 2025-10-16 10:36:59,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502181533504)>', '<ExcThread(monitor, started 140501214795520)>']
[2025-10-16 12:37:12] 2025-10-16 10:37:04,740 | INFO     | all workflow threads have been joined
[2025-10-16 12:37:12] 2025-10-16 10:37:04,741 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-16 12:37:12] 2025-10-16 10:37:04,741 | INFO     | traces error code: 0
[2025-10-16 12:37:12] 2025-10-16 10:37:04,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-16 12:37:12] 2025-10-16 10:37:11,914 | INFO     | PID=317236 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-16 12:37:12] 2025-10-16 10:37:11,914 | INFO     | found 0 job(s) in 20 queues
[2025-10-16 12:37:12] 2025-10-16 10:37:11,914 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-16 12:37:12] 2025-10-16 10:37:11,914 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-16 12:37:12] 2025-10-16 10:37:11,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-16 12:37:12] 2025-10-16 10:37:11,914 | INFO     | [monitor] control thread has ended
[2025-10-16 12:37:12] 2025-10-16 10:37:11,990 [wrapper] ==== pilot stdout END ====
[2025-10-16 12:37:12] 2025-10-16 10:37:11,994 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-16 12:37:12] 2025-10-16 10:37:11,998 [wrapper] pilotpid: 317236
[2025-10-16 12:37:12] 2025-10-16 10:37:12,002 [wrapper] Pilot exit status: 0
[2025-10-16 12:37:12] 2025-10-16 10:37:12,013 [wrapper] pandaids: 6846952798
[2025-10-16 12:37:12] 2025-10-16 10:37:12,035 [wrapper] cleanup supervisor_pilot  336744 317237
[2025-10-16 12:37:12] 2025-10-16 10:37:12,038 [wrapper] Test setup, not cleaning
[2025-10-16 12:37:12] 2025-10-16 10:37:12,042 [wrapper] apfmon messages muted
[2025-10-16 12:37:12] 2025-10-16 10:37:12,046 [wrapper] ==== wrapper stdout END ====
[2025-10-16 12:37:12] 2025-10-16 10:37:12,050 [wrapper] ==== wrapper stderr END ====
[2025-10-16 12:37:12]  *** Error codes and diagnostics ***
[2025-10-16 12:37:12]     "exeErrorCode": 0,
[2025-10-16 12:37:12]     "exeErrorDiag": "",
[2025-10-16 12:37:12]     "pilotErrorCode": 0,
[2025-10-16 12:37:12]     "pilotErrorDiag": "",
[2025-10-16 12:37:12]  *** Listing of results directory ***
[2025-10-16 12:37:12] total 433604
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc    557409 Oct 16 04:36 pilot3.tar.gz
[2025-10-16 12:37:12] -rwx------ 1 boinc boinc     36292 Oct 16 05:34 runpilot2-wrapper.sh
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc      5112 Oct 16 05:34 queuedata.json
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc       100 Oct 16 11:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-16 12:37:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 16 11:18 run_atlas
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc       105 Oct 16 11:18 job.xml
[2025-10-16 12:37:12] -rw-r--r-- 2 boinc boinc 226939147 Oct 16 11:18 EVNT.46776529._000344.pool.root.1
[2025-10-16 12:37:12] -rw-r--r-- 2 boinc boinc    569678 Oct 16 11:18 input.tar.gz
[2025-10-16 12:37:12] -rw-r--r-- 2 boinc boinc     15120 Oct 16 11:18 start_atlas.sh
[2025-10-16 12:37:12] drwxrwx--x 2 boinc boinc      4096 Oct 16 11:18 shared
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc         0 Oct 16 11:18 boinc_setup_complete
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc      6376 Oct 16 11:18 init_data.xml
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc         0 Oct 16 11:18 boinc_lockfile
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc      2558 Oct 16 11:18 pandaJob.out
[2025-10-16 12:37:12] -rw------- 1 boinc boinc    973627 Oct 16 11:18 agis_schedconf.cvmfs.json
[2025-10-16 12:37:12] -rw------- 1 boinc boinc   1560740 Oct 16 11:18 agis_ddmendpoints.agis.ALL.json
[2025-10-16 12:37:12] drwx------ 5 boinc boinc      4096 Oct 16 11:18 pilot3
[2025-10-16 12:37:12] -rw------- 1 boinc boinc 211274767 Oct 16 12:36 HITS.46776533._008834.pool.root.1
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc       529 Oct 16 12:36 boinc_task_state.xml
[2025-10-16 12:37:12] -rw------- 1 boinc boinc        95 Oct 16 12:36 pilot_heartbeat.json
[2025-10-16 12:37:12] -rw------- 1 boinc boinc      1024 Oct 16 12:36 memory_monitor_summary.json
[2025-10-16 12:37:12] -rw------- 1 boinc boinc    269700 Oct 16 12:36 log.46776533._008834.job.log.tgz.1
[2025-10-16 12:37:12] -rw------- 1 boinc boinc      7759 Oct 16 12:36 heartbeat.json
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc      8192 Oct 16 12:36 boinc_mmap_file
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc        27 Oct 16 12:36 wrapper_checkpoint.txt
[2025-10-16 12:37:12] -rw------- 1 boinc boinc       746 Oct 16 12:37 pilotlog.txt
[2025-10-16 12:37:12] -rw------- 1 boinc boinc    687741 Oct 16 12:37 log.46776533._008834.job.log.1
[2025-10-16 12:37:12] -rw------- 1 boinc boinc       357 Oct 16 12:37 output.list
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc       620 Oct 16 12:37 runtime_log
[2025-10-16 12:37:12] -rw------- 1 boinc boinc    972800 Oct 16 12:37 result.tar.gz
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc      8782 Oct 16 12:37 runtime_log.err
[2025-10-16 12:37:12] -rw------- 1 boinc boinc       659 Oct 16 12:37 XdmNDmQwTT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6MpNDm9Ivkym.diag
[2025-10-16 12:37:12] -rw-r--r-- 1 boinc boinc     11096 Oct 16 12:37 stderr.txt
[2025-10-16 12:37:12] HITS file was successfully produced:
[2025-10-16 12:37:12] -rw------- 1 boinc boinc 211274767 Oct 16 12:36 shared/HITS.pool.root.1
[2025-10-16 12:37:12]  *** Contents of shared directory: ***
[2025-10-16 12:37:12] total 429484
[2025-10-16 12:37:12] -rw-r--r-- 2 boinc boinc 226939147 Oct 16 11:18 ATLAS.root_0
[2025-10-16 12:37:12] -rw-r--r-- 2 boinc boinc    569678 Oct 16 11:18 input.tar.gz
[2025-10-16 12:37:12] -rw-r--r-- 2 boinc boinc     15120 Oct 16 11:18 start_atlas.sh
[2025-10-16 12:37:12] -rw------- 1 boinc boinc 211274767 Oct 16 12:36 HITS.pool.root.1
[2025-10-16 12:37:12] -rw------- 1 boinc boinc    972800 Oct 16 12:37 result.tar.gz
12:37:34 (313431): run_atlas exited; CPU time 17571.094804
12:37:34 (313431): called boinc_finish(0)

</stderr_txt>
]]>

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