Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:53:57 (267811): wrapper (7.7.26015): starting
09:53:57 (267811): wrapper: running run_atlas (--nthreads 4)
[2025-10-16 09:53:57] Arguments: --nthreads 4
[2025-10-16 09:53:57] Threads: 4
[2025-10-16 09:53:57] Checking for CVMFS
[2025-10-16 09:53:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-16 09:53:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-16 09:53:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-16 09:53:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-16 09:53:57] 2.9.2.0 85452 337 72688 151763 2 57 22805853 36864001 0 130560 0 482488 99.992 13446 1265 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-16 09:53:57] CVMFS is ok
[2025-10-16 09:53:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-16 09:53:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-16 09:53:58] Further information can be found at the LHC@home message board.
[2025-10-16 09:53:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-16 09:53:58] Checking for apptainer binary...
[2025-10-16 09:53:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-16 09:53:58] Running /usr/bin/apptainer --version
[2025-10-16 09:53:58] apptainer version 1.4.1-1.1
[2025-10-16 09:53:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-16 09:53:58] thA373a
[2025-10-16 09:53:58] apptainer works
[2025-10-16 09:53:58] Set ATHENA_PROC_NUMBER=4
[2025-10-16 09:53:58] Set ATHENA_CORE_NUMBER=4
[2025-10-16 09:53:58] Starting ATLAS job with PandaID=6846899685
[2025-10-16 09:53:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-16 10:01:19]  *** The last 200 lines of the pilot log: ***
[2025-10-16 10:01:19] 2025-10-16 08:00:47,825 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-16 10:01:19] 2025-10-16 08:00:47,825 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-16 10:01:19] 2025-10-16 08:00:47,825 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-16 10:01:19] 2025-10-16 08:00:47,825 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-16 10:01:19] 2025-10-16 08:00:47,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-16 10:01:19] 2025-10-16 08:00:47,825 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-16 10:01:19] 2025-10-16 08:00:47,825 | INFO     | job 6846899685 has completed (purged errors)
[2025-10-16 10:01:19] 2025-10-16 08:00:47,825 | INFO     | overall cleanup function is called
[2025-10-16 10:01:19] 2025-10-16 08:00:48,832 | INFO     | --- collectZombieJob: --- 10, [278186]
[2025-10-16 10:01:19] 2025-10-16 08:00:48,832 | INFO     | zombie collector waiting for pid 278186
[2025-10-16 10:01:19] 2025-10-16 08:00:48,833 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-16 10:01:19] 2025-10-16 08:00:48,833 | INFO     | collected zombie processes
[2025-10-16 10:01:19] 2025-10-16 08:00:48,833 | INFO     | will attempt to kill all subprocesses of pid=278186
[2025-10-16 10:01:19] 2025-10-16 08:00:48,884 | INFO     | process IDs to be killed: [278186] (in reverse order)
[2025-10-16 10:01:19] 2025-10-16 08:00:48,919 | WARNING  | found no corresponding commands to process id(s)
[2025-10-16 10:01:19] 2025-10-16 08:00:48,919 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-16 10:01:19] 2025-10-16 08:00:48,921 | INFO     | did not find any defunct processes belonging to 278186
[2025-10-16 10:01:19] 2025-10-16 08:00:48,923 | INFO     | did not find any defunct processes belonging to 278186
[2025-10-16 10:01:19] 2025-10-16 08:00:48,923 | INFO     | ready for new job
[2025-10-16 10:01:19] 2025-10-16 08:00:48,923 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-16 10:01:19] 2025-10-16 08:00:48,924 | INFO     | ***************************************
[2025-10-16 10:01:19] 2025-10-16 08:00:48,924 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-16 10:01:19] 2025-10-16 08:00:48,924 | INFO     | ***************************************
[2025-10-16 10:01:19] 2025-10-16 08:00:48,924 | INFO     | 
[2025-10-16 10:01:19] 2025-10-16 08:00:48,924 | INFO     | architecture information:
[2025-10-16 10:01:19] 2025-10-16 08:00:48,925 | INFO     | executing command: cat /etc/os-release
[2025-10-16 10:01:19] 2025-10-16 08:00:48,938 | INFO     | cat /etc/os-release:
[2025-10-16 10:01:19] NAME="CentOS Linux"
[2025-10-16 10:01:19] VERSION="7 (Core)"
[2025-10-16 10:01:19] ID="centos"
[2025-10-16 10:01:19] ID_LIKE="rhel fedora"
[2025-10-16 10:01:19] VERSION_ID="7"
[2025-10-16 10:01:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-16 10:01:19] ANSI_COLOR="0;31"
[2025-10-16 10:01:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-16 10:01:19] HOME_URL="https://www.centos.org/"
[2025-10-16 10:01:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-16 10:01:19] 
[2025-10-16 10:01:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-16 10:01:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-16 10:01:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-16 10:01:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-16 10:01:19] 
[2025-10-16 10:01:19] 2025-10-16 08:00:48,939 | INFO     | ***************************************
[2025-10-16 10:01:19] 2025-10-16 08:00:49,442 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-16 10:01:19] 2025-10-16 08:00:49,459 | INFO     | sufficient remaining disk space (338231820288 B)
[2025-10-16 10:01:19] 2025-10-16 08:00:49,459 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-16 10:01:19] 2025-10-16 08:00:49,459 | INFO     | current server update state: UPDATING_FINAL
[2025-10-16 10:01:19] 2025-10-16 08:00:49,459 | INFO     | update_server=False
[2025-10-16 10:01:19] 2025-10-16 08:00:49,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-16 10:01:19] 2025-10-16 08:00:49,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-16 10:01:19] 2025-10-16 08:00:49,459 | INFO     | aborting loop
[2025-10-16 10:01:19] 2025-10-16 08:00:49,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-16 10:01:19] 2025-10-16 08:00:49,460 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-16 10:01:19] 2025-10-16 08:00:49,675 | INFO     | all data control threads have been joined
[2025-10-16 10:01:19] 2025-10-16 08:00:49,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-16 10:01:19] 2025-10-16 08:00:50,052 | INFO     | all job control threads have been joined
[2025-10-16 10:01:19] 2025-10-16 08:00:50,464 | INFO     | [job] job monitor thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:50,464 | INFO     | [job] retrieve thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:50,465 | INFO     | [job] queue monitor thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:50,566 | INFO     | all payload control threads have been joined
[2025-10-16 10:01:19] 2025-10-16 08:00:50,681 | INFO     | [data] control thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:50,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:50,987 | INFO     | [payload] execute_payloads thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:51,003 | INFO     | [job] validate thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:51,058 | INFO     | [job] control thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:51,105 | INFO     | [job] create_data_payload thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:51,180 | INFO     | [payload] validate_pre thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:51,370 | INFO     | [payload] failed_post thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:51,390 | INFO     | [data] copytool_in thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:51,465 | INFO     | [data] copytool_out thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:51,571 | INFO     | [payload] control thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:51,761 | INFO     | [payload] validate_post thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:00:53,938 | INFO     | [data] queue_monitor thread has finished
[2025-10-16 10:01:19] 2025-10-16 08:01:05,555 | INFO     | [monitor] cgroup control has ended
[2025-10-16 10:01:19] 2025-10-16 08:01:06,364 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140230775588672)>', '<ExcThread(monitor, started 140230103377664)>']
[2025-10-16 10:01:19] 2025-10-16 08:01:11,390 | INFO     | all workflow threads have been joined
[2025-10-16 10:01:19] 2025-10-16 08:01:11,390 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-16 10:01:19] 2025-10-16 08:01:11,390 | INFO     | traces error code: 0
[2025-10-16 10:01:19] 2025-10-16 08:01:11,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-16 10:01:19] 2025-10-16 08:01:19,476 | INFO     | PID=271616 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-16 10:01:19] 2025-10-16 08:01:19,477 | INFO     | found 0 job(s) in 20 queues
[2025-10-16 10:01:19] 2025-10-16 08:01:19,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-16 10:01:19] 2025-10-16 08:01:19,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-16 10:01:19] 2025-10-16 08:01:19,477 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-16 10:01:19] 2025-10-16 08:01:19,477 | INFO     | [monitor] control thread has ended
[2025-10-16 10:01:19] 2025-10-16 08:01:19,552 [wrapper] ==== pilot stdout END ====
[2025-10-16 10:01:19] 2025-10-16 08:01:19,556 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-16 10:01:19] 2025-10-16 08:01:19,560 [wrapper] pilotpid: 271616
[2025-10-16 10:01:19] 2025-10-16 08:01:19,564 [wrapper] Pilot exit status: 0
[2025-10-16 10:01:19] 2025-10-16 08:01:19,576 [wrapper] pandaids: 6846899685
[2025-10-16 10:01:19] 2025-10-16 08:01:19,598 [wrapper] cleanup supervisor_pilot  271622 271617
[2025-10-16 10:01:19] 2025-10-16 08:01:19,602 [wrapper] Test setup, not cleaning
[2025-10-16 10:01:19] 2025-10-16 08:01:19,606 [wrapper] apfmon messages muted
[2025-10-16 10:01:19] 2025-10-16 08:01:19,610 [wrapper] ==== wrapper stdout END ====
[2025-10-16 10:01:19] 2025-10-16 08:01:19,613 [wrapper] ==== wrapper stderr END ====
[2025-10-16 10:01:19]  *** Error codes and diagnostics ***
[2025-10-16 10:01:19]     "exeErrorCode": 65,
[2025-10-16 10:01:19]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 8459.83 KB/s",
[2025-10-16 10:01:19]     "pilotErrorCode": 1305,
[2025-10-16 10:01:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2025-10-16 10:01:19]  *** Listing of results directory ***
[2025-10-16 10:01:19] total 221064
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc    557409 Oct 16 03:30 pilot3.tar.gz
[2025-10-16 10:01:19] -rwx------ 1 boinc boinc     36292 Oct 16 04:24 runpilot2-wrapper.sh
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc      5112 Oct 16 04:24 queuedata.json
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc       100 Oct 16 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-16 10:01:19] -rwxr-xr-x 1 boinc boinc      7986 Oct 16 09:53 run_atlas
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc       105 Oct 16 09:53 job.xml
[2025-10-16 10:01:19] -rw-r--r-- 2 boinc boinc 221970536 Oct 16 09:53 EVNT.46676267._002181.pool.root.1
[2025-10-16 10:01:19] -rw-r--r-- 2 boinc boinc    569683 Oct 16 09:53 input.tar.gz
[2025-10-16 10:01:19] -rw-r--r-- 2 boinc boinc     15120 Oct 16 09:53 start_atlas.sh
[2025-10-16 10:01:19] drwxrwx--x 2 boinc boinc      4096 Oct 16 09:53 shared
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc         0 Oct 16 09:53 boinc_setup_complete
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc      6376 Oct 16 09:53 init_data.xml
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc         0 Oct 16 09:53 boinc_lockfile
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc      2547 Oct 16 09:53 pandaJob.out
[2025-10-16 10:01:19] -rw------- 1 boinc boinc    973548 Oct 16 09:54 agis_schedconf.cvmfs.json
[2025-10-16 10:01:19] -rw------- 1 boinc boinc   1560740 Oct 16 09:54 agis_ddmendpoints.agis.ALL.json
[2025-10-16 10:01:19] drwx------ 5 boinc boinc      4096 Oct 16 09:54 pilot3
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc       526 Oct 16 09:58 boinc_task_state.xml
[2025-10-16 10:01:19] -rw------- 1 boinc boinc      1010 Oct 16 09:58 memory_monitor_summary.json
[2025-10-16 10:01:19] -rw------- 1 boinc boinc    140743 Oct 16 09:58 log.46676269._097415.job.log.tgz.1
[2025-10-16 10:01:19] -rw------- 1 boinc boinc      9863 Oct 16 10:00 heartbeat.json
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc      8192 Oct 16 10:01 boinc_mmap_file
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc        24 Oct 16 10:01 wrapper_checkpoint.txt
[2025-10-16 10:01:19] -rw------- 1 boinc boinc       746 Oct 16 10:01 pilotlog.txt
[2025-10-16 10:01:19] -rw------- 1 boinc boinc        95 Oct 16 10:01 pilot_heartbeat.json
[2025-10-16 10:01:19] -rw------- 1 boinc boinc    114100 Oct 16 10:01 log.46676269._097415.job.log.1
[2025-10-16 10:01:19] -rw------- 1 boinc boinc       188 Oct 16 10:01 output.list
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc       620 Oct 16 10:01 runtime_log
[2025-10-16 10:01:19] -rw------- 1 boinc boinc    276480 Oct 16 10:01 result.tar.gz
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc      8629 Oct 16 10:01 runtime_log.err
[2025-10-16 10:01:19] -rw------- 1 boinc boinc       651 Oct 16 10:01 RRQLDmxqST8n9Rq4apOajLDm4fhM0noT9bVof3QYDmbPXMDmVbMm6m.diag
[2025-10-16 10:01:19] -rw-r--r-- 1 boinc boinc     11897 Oct 16 10:01 stderr.txt
[2025-10-16 10:01:19] No HITS result produced
[2025-10-16 10:01:19]  *** Contents of shared directory: ***
[2025-10-16 10:01:19] total 217624
[2025-10-16 10:01:19] -rw-r--r-- 2 boinc boinc 221970536 Oct 16 09:53 ATLAS.root_0
[2025-10-16 10:01:19] -rw-r--r-- 2 boinc boinc    569683 Oct 16 09:53 input.tar.gz
[2025-10-16 10:01:19] -rw-r--r-- 2 boinc boinc     15120 Oct 16 09:53 start_atlas.sh
[2025-10-16 10:01:19] -rw------- 1 boinc boinc    276480 Oct 16 10:01 result.tar.gz
10:01:20 (267811): run_atlas exited; CPU time 146.933486
10:01:20 (267811): called boinc_finish(0)

</stderr_txt>
]]>

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