Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:31:16 (223181): wrapper (7.7.26015): starting
08:31:16 (223181): wrapper: running run_atlas (--nthreads 4)
[2025-10-16 08:31:16] Arguments: --nthreads 4
[2025-10-16 08:31:16] Threads: 4
[2025-10-16 08:31:16] Checking for CVMFS
[2025-10-16 08:31:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-16 08:31:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-16 08:31:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-16 08:31:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-16 08:31:16] 2.9.2.0 85452 255 67468 151762 1 188 22796342 36864001 0 130560 0 366013 99.990 12142 1396 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-16 08:31:16] CVMFS is ok
[2025-10-16 08:31:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-16 08:31:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-16 08:31:16] Further information can be found at the LHC@home message board.
[2025-10-16 08:31:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-16 08:31:16] Checking for apptainer binary...
[2025-10-16 08:31:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-16 08:31:16] Running /usr/bin/apptainer --version
[2025-10-16 08:31:16] apptainer version 1.4.1-1.1
[2025-10-16 08:31:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-16 08:31:16] thA373a
[2025-10-16 08:31:16] apptainer works
[2025-10-16 08:31:16] Set ATHENA_PROC_NUMBER=4
[2025-10-16 08:31:16] Set ATHENA_CORE_NUMBER=4
[2025-10-16 08:31:16] Starting ATLAS job with PandaID=6846783289
[2025-10-16 08:31:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-16 08:35:30]  *** The last 200 lines of the pilot log: ***
[2025-10-16 08:35:30] 2025-10-16 06:35:02,997 | INFO     | did not find any defunct processes belonging to 233536
[2025-10-16 08:35:30] 2025-10-16 06:35:02,999 | INFO     | did not find any defunct processes belonging to 233536
[2025-10-16 08:35:30] 2025-10-16 06:35:02,999 | INFO     | ready for new job
[2025-10-16 08:35:30] 2025-10-16 06:35:02,999 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-16 08:35:30] 2025-10-16 06:35:03,000 | INFO     | ***************************************
[2025-10-16 08:35:30] 2025-10-16 06:35:03,000 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-16 08:35:30] 2025-10-16 06:35:03,000 | INFO     | ***************************************
[2025-10-16 08:35:30] 2025-10-16 06:35:03,000 | INFO     | 
[2025-10-16 08:35:30] 2025-10-16 06:35:03,000 | INFO     | architecture information:
[2025-10-16 08:35:30] 2025-10-16 06:35:03,001 | INFO     | executing command: cat /etc/os-release
[2025-10-16 08:35:30] 2025-10-16 06:35:03,015 | INFO     | cat /etc/os-release:
[2025-10-16 08:35:30] NAME="CentOS Linux"
[2025-10-16 08:35:30] VERSION="7 (Core)"
[2025-10-16 08:35:30] ID="centos"
[2025-10-16 08:35:30] ID_LIKE="rhel fedora"
[2025-10-16 08:35:30] VERSION_ID="7"
[2025-10-16 08:35:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-16 08:35:30] ANSI_COLOR="0;31"
[2025-10-16 08:35:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-16 08:35:30] HOME_URL="https://www.centos.org/"
[2025-10-16 08:35:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-16 08:35:30] 
[2025-10-16 08:35:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-16 08:35:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-16 08:35:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-16 08:35:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-16 08:35:30] 
[2025-10-16 08:35:30] 2025-10-16 06:35:03,015 | INFO     | ***************************************
[2025-10-16 08:35:30] 2025-10-16 06:35:03,518 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-16 08:35:30] 2025-10-16 06:35:03,535 | INFO     | sufficient remaining disk space (338008473600 B)
[2025-10-16 08:35:30] 2025-10-16 06:35:03,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-16 08:35:30] 2025-10-16 06:35:03,536 | INFO     | current server update state: UPDATING_FINAL
[2025-10-16 08:35:30] 2025-10-16 06:35:03,536 | INFO     | update_server=False
[2025-10-16 08:35:30] 2025-10-16 06:35:03,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-16 08:35:30] 2025-10-16 06:35:03,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-16 08:35:30] 2025-10-16 06:35:03,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-16 08:35:30] 2025-10-16 06:35:03,536 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-16 08:35:30] 2025-10-16 06:35:03,536 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-16 08:35:30] 2025-10-16 06:35:03,537 | INFO     | aborting loop
[2025-10-16 08:35:30] 2025-10-16 06:35:03,537 | INFO     | found 0 job(s) in 20 queues
[2025-10-16 08:35:30] 2025-10-16 06:35:03,537 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-16 08:35:30] 2025-10-16 06:35:03,537 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-16 08:35:30] 2025-10-16 06:35:03,545 | INFO     | all payload control threads have been joined
[2025-10-16 08:35:30] 2025-10-16 06:35:03,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-16 08:35:30] 2025-10-16 06:35:03,929 | INFO     | all job control threads have been joined
[2025-10-16 08:35:30] 2025-10-16 06:35:04,523 | INFO     | all data control threads have been joined
[2025-10-16 08:35:30] 2025-10-16 06:35:04,541 | INFO     | [job] retrieve thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:04,542 | INFO     | [job] queue monitor thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:04,542 | INFO     | [job] job monitor thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:04,549 | INFO     | [payload] control thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:04,607 | INFO     | [payload] failed_post thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:04,612 | INFO     | [payload] validate_pre thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:04,845 | INFO     | [data] copytool_in thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:04,934 | INFO     | [job] control thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:05,224 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:05,524 | INFO     | [data] control thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:05,538 | INFO     | [data] copytool_out thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:05,627 | INFO     | [payload] execute_payloads thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:05,658 | INFO     | [payload] validate_post thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:05,942 | INFO     | [job] validate thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:06,031 | INFO     | [job] create_data_payload thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:07,574 | INFO     | [data] queue_monitor thread has finished
[2025-10-16 08:35:30] 2025-10-16 06:35:23,654 | INFO     | [monitor] cgroup control has ended
[2025-10-16 08:35:30] 2025-10-16 06:35:25,651 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663587485504)>', '<ExcThread(monitor, started 140662712293120)>']
[2025-10-16 08:35:30] 2025-10-16 06:35:26,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-16 08:35:30] 2025-10-16 06:35:26,647 | INFO     | [monitor] control thread has ended
[2025-10-16 08:35:30] 2025-10-16 06:35:30,677 | INFO     | all workflow threads have been joined
[2025-10-16 08:35:30] 2025-10-16 06:35:30,677 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-16 08:35:30] 2025-10-16 06:35:30,677 | INFO     | traces error code: 0
[2025-10-16 08:35:30] 2025-10-16 06:35:30,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-16 08:35:30] 2025-10-16 06:35:30,753 [wrapper] ==== pilot stdout END ====
[2025-10-16 08:35:30] 2025-10-16 06:35:30,757 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-16 08:35:30] 2025-10-16 06:35:30,761 [wrapper] pilotpid: 226980
[2025-10-16 08:35:30] 2025-10-16 06:35:30,765 [wrapper] Pilot exit status: 0
[2025-10-16 08:35:30] 2025-10-16 06:35:30,776 [wrapper] pandaids: 6846783289
[2025-10-16 08:35:30] 2025-10-16 06:35:30,798 [wrapper] cleanup supervisor_pilot  226986 226981
[2025-10-16 08:35:30] 2025-10-16 06:35:30,802 [wrapper] Test setup, not cleaning
[2025-10-16 08:35:30] 2025-10-16 06:35:30,806 [wrapper] apfmon messages muted
[2025-10-16 08:35:30] 2025-10-16 06:35:30,809 [wrapper] ==== wrapper stdout END ====
[2025-10-16 08:35:30] 2025-10-16 06:35:30,813 [wrapper] ==== wrapper stderr END ====
[2025-10-16 08:35:30]  *** Error codes and diagnostics ***
[2025-10-16 08:35:30]     "exeErrorCode": 65,
[2025-10-16 08:35:30]     "exeErrorDiag": "EVNTtoHITS got a SIGTRAP signal (exit code 133)",
[2025-10-16 08:35:30]     "pilotErrorCode": 1305,
[2025-10-16 08:35:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGTRAP signal (exit code 133)",
[2025-10-16 08:35:30]  *** Listing of results directory ***
[2025-10-16 08:35:30] total 226024
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc    557409 Oct 16 03:30 pilot3.tar.gz
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc      5112 Oct 16 04:00 queuedata.json
[2025-10-16 08:35:30] -rwx------ 1 boinc boinc     36292 Oct 16 04:02 runpilot2-wrapper.sh
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc       100 Oct 16 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-16 08:35:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 16 08:31 run_atlas
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc       105 Oct 16 08:31 job.xml
[2025-10-16 08:35:30] -rw-r--r-- 2 boinc boinc 227271951 Oct 16 08:31 EVNT.46771634._000317.pool.root.1
[2025-10-16 08:35:30] -rw-r--r-- 2 boinc boinc    569678 Oct 16 08:31 input.tar.gz
[2025-10-16 08:35:30] -rw-r--r-- 2 boinc boinc     15120 Oct 16 08:31 start_atlas.sh
[2025-10-16 08:35:30] drwxrwx--x 2 boinc boinc      4096 Oct 16 08:31 shared
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc         0 Oct 16 08:31 boinc_setup_complete
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc      6376 Oct 16 08:31 init_data.xml
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc         0 Oct 16 08:31 boinc_lockfile
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc      2553 Oct 16 08:31 pandaJob.out
[2025-10-16 08:35:30] -rw------- 1 boinc boinc    973556 Oct 16 08:31 agis_schedconf.cvmfs.json
[2025-10-16 08:35:30] -rw------- 1 boinc boinc   1560740 Oct 16 08:31 agis_ddmendpoints.agis.ALL.json
[2025-10-16 08:35:30] drwx------ 5 boinc boinc      4096 Oct 16 08:31 pilot3
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc       525 Oct 16 08:32 boinc_task_state.xml
[2025-10-16 08:35:30] -rw------- 1 boinc boinc       999 Oct 16 08:32 memory_monitor_summary.json
[2025-10-16 08:35:30] -rw------- 1 boinc boinc     49375 Oct 16 08:33 log.46771637._007158.job.log.tgz.1
[2025-10-16 08:35:30] -rw------- 1 boinc boinc        95 Oct 16 08:34 pilot_heartbeat.json
[2025-10-16 08:35:30] -rw------- 1 boinc boinc      8459 Oct 16 08:35 heartbeat.json
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc      8192 Oct 16 08:35 boinc_mmap_file
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc        23 Oct 16 08:35 wrapper_checkpoint.txt
[2025-10-16 08:35:30] -rw------- 1 boinc boinc      4556 Oct 16 08:35 pilotlog.txt
[2025-10-16 08:35:30] -rw------- 1 boinc boinc     90457 Oct 16 08:35 log.46771637._007158.job.log.1
[2025-10-16 08:35:30] -rw------- 1 boinc boinc       188 Oct 16 08:35 output.list
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc       620 Oct 16 08:35 runtime_log
[2025-10-16 08:35:30] -rw------- 1 boinc boinc    163840 Oct 16 08:35 result.tar.gz
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc      8629 Oct 16 08:35 runtime_log.err
[2025-10-16 08:35:30] -rw------- 1 boinc boinc       650 Oct 16 08:35 Uf1KDmlUST8n9Rq4apOajLDm4fhM0noT9bVof3QYDmyLXMDm510cBn.diag
[2025-10-16 08:35:30] -rw-r--r-- 1 boinc boinc      9893 Oct 16 08:35 stderr.txt
[2025-10-16 08:35:30] No HITS result produced
[2025-10-16 08:35:30]  *** Contents of shared directory: ***
[2025-10-16 08:35:30] total 222688
[2025-10-16 08:35:30] -rw-r--r-- 2 boinc boinc 227271951 Oct 16 08:31 ATLAS.root_0
[2025-10-16 08:35:30] -rw-r--r-- 2 boinc boinc    569678 Oct 16 08:31 input.tar.gz
[2025-10-16 08:35:30] -rw-r--r-- 2 boinc boinc     15120 Oct 16 08:31 start_atlas.sh
[2025-10-16 08:35:30] -rw------- 1 boinc boinc    163840 Oct 16 08:35 result.tar.gz
08:35:31 (223181): run_atlas exited; CPU time 25.176327
08:35:31 (223181): called boinc_finish(0)

</stderr_txt>
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