Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:20:23 (106233): wrapper (7.7.26015): starting
04:20:23 (106233): wrapper: running run_atlas (--nthreads 4)
[2025-10-16 04:20:23] Arguments: --nthreads 4
[2025-10-16 04:20:23] Threads: 4
[2025-10-16 04:20:23] Checking for CVMFS
[2025-10-16 04:20:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-16 04:20:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-16 04:20:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-16 04:20:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-16 04:20:23] 2.9.2.0 85452 4 49304 151756 3 186 22749987 36864000 0 130560 0 54023 99.970 2803 1882 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-16 04:20:23] CVMFS is ok
[2025-10-16 04:20:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-16 04:20:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-16 04:20:23] Further information can be found at the LHC@home message board.
[2025-10-16 04:20:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-16 04:20:23] Checking for apptainer binary...
[2025-10-16 04:20:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-16 04:20:23] Running /usr/bin/apptainer --version
[2025-10-16 04:20:23] apptainer version 1.4.1-1.1
[2025-10-16 04:20:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-16 04:20:23] thA373a
[2025-10-16 04:20:23] apptainer works
[2025-10-16 04:20:23] Set ATHENA_PROC_NUMBER=4
[2025-10-16 04:20:23] Set ATHENA_CORE_NUMBER=4
[2025-10-16 04:20:23] Starting ATLAS job with PandaID=6846778591
[2025-10-16 04:20:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-16 04:27:37]  *** The last 200 lines of the pilot log: ***
[2025-10-16 04:27:37] 2025-10-16 02:26:42,660 | INFO     | update_server=False
[2025-10-16 04:27:37] 2025-10-16 02:26:42,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-16 04:27:37] 2025-10-16 02:26:42,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-16 04:27:37] 2025-10-16 02:26:42,661 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-16 04:27:37] 2025-10-16 02:26:42,661 | INFO     | aborting loop
[2025-10-16 04:27:37] 2025-10-16 02:26:42,835 | INFO     | all payload control threads have been joined
[2025-10-16 04:27:37] 2025-10-16 02:26:43,030 | INFO     | all data control threads have been joined
[2025-10-16 04:27:37] 2025-10-16 02:26:43,077 | INFO     | all job control threads have been joined
[2025-10-16 04:27:37] 2025-10-16 02:26:43,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-16 04:27:37] 2025-10-16 02:26:43,664 | INFO     | [job] queue monitor thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:43,665 | INFO     | [job] job monitor thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:43,666 | INFO     | [job] retrieve thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:43,716 | INFO     | [data] copytool_in thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:43,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-16 04:27:37] 2025-10-16 02:26:43,841 | INFO     | [payload] control thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:44,011 | INFO     | [payload] failed_post thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:44,036 | INFO     | [data] control thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:44,083 | INFO     | [job] control thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:44,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:44,788 | INFO     | [job] validate thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:44,917 | INFO     | [job] create_data_payload thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:44,997 | INFO     | [payload] validate_pre thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:45,007 | INFO     | [payload] execute_payloads thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:45,069 | INFO     | [payload] validate_post thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:45,124 | INFO     | [data] copytool_out thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:26:47,780 | INFO     | [data] queue_monitor thread has finished
[2025-10-16 04:27:37] 2025-10-16 02:27:12,659 | INFO     | PID=110024 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-16 04:27:37] 2025-10-16 02:27:12,660 | INFO     | found 0 job(s) in 20 queues
[2025-10-16 04:27:37] 2025-10-16 02:27:12,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-16 04:27:37] 2025-10-16 02:27:12,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-16 04:27:37] 2025-10-16 02:27:30,966 | INFO     | [monitor] cgroup control has ended
[2025-10-16 04:27:37] 2025-10-16 02:27:32,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140044303148864)>', '<ExcThread(monitor, started 140043356194560)>']
[2025-10-16 04:27:37] 2025-10-16 02:27:32,762 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-16 04:27:37] 2025-10-16 02:27:32,762 | INFO     | [monitor] control thread has ended
[2025-10-16 04:27:37] 2025-10-16 02:27:37,210 | INFO     | all workflow threads have been joined
[2025-10-16 04:27:37] 2025-10-16 02:27:37,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-16 04:27:37] 2025-10-16 02:27:37,210 | INFO     | traces error code: 0
[2025-10-16 04:27:37] 2025-10-16 02:27:37,210 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-16 04:27:37] 2025-10-16 02:27:37,287 [wrapper] ==== pilot stdout END ====
[2025-10-16 04:27:37] 2025-10-16 02:27:37,290 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-16 04:27:37] 2025-10-16 02:27:37,294 [wrapper] pilotpid: 110024
[2025-10-16 04:27:37] 2025-10-16 02:27:37,298 [wrapper] Pilot exit status: 0
[2025-10-16 04:27:37] 2025-10-16 02:27:37,309 [wrapper] pandaids: 6846778591
[2025-10-16 04:27:37] 2025-10-16 02:27:37,331 [wrapper] cleanup supervisor_pilot  110030 110025
[2025-10-16 04:27:37] 2025-10-16 02:27:37,335 [wrapper] Test setup, not cleaning
[2025-10-16 04:27:37] 2025-10-16 02:27:37,338 [wrapper] apfmon messages muted
[2025-10-16 04:27:37] 2025-10-16 02:27:37,342 [wrapper] ==== wrapper stdout END ====
[2025-10-16 04:27:37] 2025-10-16 02:27:37,346 [wrapper] ==== wrapper stderr END ====
[2025-10-16 04:27:37]  *** Error codes and diagnostics ***
[2025-10-16 04:27:37]     "exeErrorCode": 65,
[2025-10-16 04:27:37]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-16 04:27:37]     "pilotErrorCode": 1305,
[2025-10-16 04:27:37]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-16 04:27:37]  *** Listing of results directory ***
[2025-10-16 04:27:37] total 225172
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc    557409 Oct 16 02:32 pilot3.tar.gz
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc      5112 Oct 16 03:04 queuedata.json
[2025-10-16 04:27:37] -rwx------ 1 boinc boinc     36292 Oct 16 03:07 runpilot2-wrapper.sh
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc       100 Oct 16 04:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-16 04:27:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 16 04:20 run_atlas
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc       105 Oct 16 04:20 job.xml
[2025-10-16 04:27:37] -rw-r--r-- 2 boinc boinc 226298817 Oct 16 04:20 EVNT.46771634._000067.pool.root.1
[2025-10-16 04:27:37] -rw-r--r-- 2 boinc boinc    569678 Oct 16 04:20 input.tar.gz
[2025-10-16 04:27:37] -rw-r--r-- 2 boinc boinc     15120 Oct 16 04:20 start_atlas.sh
[2025-10-16 04:27:37] drwxrwx--x 2 boinc boinc      4096 Oct 16 04:20 shared
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc         0 Oct 16 04:20 boinc_setup_complete
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc      6376 Oct 16 04:20 init_data.xml
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc         0 Oct 16 04:20 boinc_lockfile
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc      2552 Oct 16 04:20 pandaJob.out
[2025-10-16 04:27:37] -rw------- 1 boinc boinc    974318 Oct 16 04:20 agis_schedconf.cvmfs.json
[2025-10-16 04:27:37] -rw------- 1 boinc boinc   1560740 Oct 16 04:20 agis_ddmendpoints.agis.ALL.json
[2025-10-16 04:27:37] drwx------ 5 boinc boinc      4096 Oct 16 04:20 pilot3
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc       525 Oct 16 04:24 boinc_task_state.xml
[2025-10-16 04:27:37] -rw------- 1 boinc boinc       999 Oct 16 04:24 memory_monitor_summary.json
[2025-10-16 04:27:37] -rw------- 1 boinc boinc     88753 Oct 16 04:24 log.46771637._005894.job.log.tgz.1
[2025-10-16 04:27:37] -rw------- 1 boinc boinc        95 Oct 16 04:26 pilot_heartbeat.json
[2025-10-16 04:27:37] -rw------- 1 boinc boinc      9704 Oct 16 04:26 heartbeat.json
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc        23 Oct 16 04:27 wrapper_checkpoint.txt
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc      8192 Oct 16 04:27 boinc_mmap_file
[2025-10-16 04:27:37] -rw------- 1 boinc boinc      4751 Oct 16 04:27 pilotlog.txt
[2025-10-16 04:27:37] -rw------- 1 boinc boinc    109944 Oct 16 04:27 log.46771637._005894.job.log.1
[2025-10-16 04:27:37] -rw------- 1 boinc boinc       188 Oct 16 04:27 output.list
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc       620 Oct 16 04:27 runtime_log
[2025-10-16 04:27:37] -rw------- 1 boinc boinc    215040 Oct 16 04:27 result.tar.gz
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc      8629 Oct 16 04:27 runtime_log.err
[2025-10-16 04:27:37] -rw------- 1 boinc boinc       651 Oct 16 04:27 ck9NDmYdRT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmuBXMDmm7SpGn.diag
[2025-10-16 04:27:37] -rw-r--r-- 1 boinc boinc      7840 Oct 16 04:27 stderr.txt
[2025-10-16 04:27:37] No HITS result produced
[2025-10-16 04:27:37]  *** Contents of shared directory: ***
[2025-10-16 04:27:37] total 221788
[2025-10-16 04:27:37] -rw-r--r-- 2 boinc boinc 226298817 Oct 16 04:20 ATLAS.root_0
[2025-10-16 04:27:37] -rw-r--r-- 2 boinc boinc    569678 Oct 16 04:20 input.tar.gz
[2025-10-16 04:27:37] -rw-r--r-- 2 boinc boinc     15120 Oct 16 04:20 start_atlas.sh
[2025-10-16 04:27:37] -rw------- 1 boinc boinc    215040 Oct 16 04:27 result.tar.gz
04:27:39 (106233): run_atlas exited; CPU time 105.754213
04:27:39 (106233): called boinc_finish(0)

</stderr_txt>
]]>

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