Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:15:59 (85256): wrapper (7.7.26015): starting
04:15:59 (85256): wrapper: running run_atlas (--nthreads 4)
[2025-10-16 04:15:59] Arguments: --nthreads 4
[2025-10-16 04:15:59] Threads: 4
[2025-10-16 04:15:59] Checking for CVMFS
[2025-10-16 04:16:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-16 04:16:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-16 04:16:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-16 04:16:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-16 04:16:01] 2.9.2.0 85452 0 30056 151756 3 1 22740656 36864001 0 130560 0 0 0.000 1291 2954 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-16 04:16:01] CVMFS is ok
[2025-10-16 04:16:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-16 04:16:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-16 04:16:01] Further information can be found at the LHC@home message board.
[2025-10-16 04:16:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-16 04:16:01] Checking for apptainer binary...
[2025-10-16 04:16:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-16 04:16:01] Running /usr/bin/apptainer --version
[2025-10-16 04:16:01] apptainer version 1.4.1-1.1
[2025-10-16 04:16:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-16 04:16:01] thA373a
[2025-10-16 04:16:01] apptainer works
[2025-10-16 04:16:01] Set ATHENA_PROC_NUMBER=4
[2025-10-16 04:16:01] Set ATHENA_CORE_NUMBER=4
[2025-10-16 04:16:01] Starting ATLAS job with PandaID=6846778585
[2025-10-16 04:16:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-16 04:20:18]  *** The last 200 lines of the pilot log: ***
[2025-10-16 04:20:18] 2025-10-16 02:19:25,191 | INFO     | all payload control threads have been joined
[2025-10-16 04:20:18] 2025-10-16 02:19:25,362 | INFO     | all job control threads have been joined
[2025-10-16 04:20:18] 2025-10-16 02:19:25,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-16 04:20:18] 2025-10-16 02:19:25,471 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:25,562 | INFO     | [data] control thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:25,607 | INFO     | [payload] validate_post thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:26,016 | INFO     | [payload] execute_payloads thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:26,196 | INFO     | [job] validate thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:26,196 | INFO     | [payload] control thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:26,299 | INFO     | [job] create_data_payload thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:26,368 | INFO     | [job] control thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:26,380 | INFO     | [payload] failed_post thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:26,622 | INFO     | [data] copytool_out thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:29,377 | INFO     | [data] queue_monitor thread has finished
[2025-10-16 04:20:18] 2025-10-16 02:19:53,366 | INFO     | PID=89608 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-16 04:20:18] 2025-10-16 02:19:53,366 | INFO     | found 0 job(s) in 20 queues
[2025-10-16 04:20:18] 2025-10-16 02:19:53,366 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-16 04:20:18] 2025-10-16 02:19:53,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-16 04:20:18] 2025-10-16 02:20:12,402 | INFO     | [monitor] cgroup control has ended
[2025-10-16 04:20:18] 2025-10-16 02:20:13,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140577161914176)>', '<ExcThread(monitor, started 140576653551360)>']
[2025-10-16 04:20:18] 2025-10-16 02:20:13,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-16 04:20:18] 2025-10-16 02:20:13,471 | INFO     | [monitor] control thread has ended
[2025-10-16 04:20:18] 2025-10-16 02:20:18,433 | INFO     | all workflow threads have been joined
[2025-10-16 04:20:18] 2025-10-16 02:20:18,434 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-16 04:20:18] 2025-10-16 02:20:18,434 | INFO     | traces error code: 0
[2025-10-16 04:20:18] 2025-10-16 02:20:18,434 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-16 04:20:18] 2025-10-16 02:20:18,510 [wrapper] ==== pilot stdout END ====
[2025-10-16 04:20:18] 2025-10-16 02:20:18,514 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-16 04:20:18] 2025-10-16 02:20:18,518 [wrapper] pilotpid: 89608
[2025-10-16 04:20:18] 2025-10-16 02:20:18,522 [wrapper] Pilot exit status: 0
[2025-10-16 04:20:18] 2025-10-16 02:20:18,533 [wrapper] pandaids: 6846778585
[2025-10-16 04:20:18] 2025-10-16 02:20:18,555 [wrapper] cleanup supervisor_pilot   89614 89609
[2025-10-16 04:20:18] 2025-10-16 02:20:18,559 [wrapper] Test setup, not cleaning
[2025-10-16 04:20:18] 2025-10-16 02:20:18,562 [wrapper] apfmon messages muted
[2025-10-16 04:20:18] 2025-10-16 02:20:18,566 [wrapper] ==== wrapper stdout END ====
[2025-10-16 04:20:18] 2025-10-16 02:20:18,569 [wrapper] ==== wrapper stderr END ====
[2025-10-16 04:20:18]  *** Error codes and diagnostics ***
[2025-10-16 04:20:18]     "exeErrorCode": 0,
[2025-10-16 04:20:18]     "exeErrorDiag": "",
[2025-10-16 04:20:18]     "pilotErrorCode": 1305,
[2025-10-16 04:20:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
[2025-10-16 04:20:18]  *** Listing of results directory ***
[2025-10-16 04:20:18] total 225012
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc    557409 Oct 16 02:32 pilot3.tar.gz
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc      5112 Oct 16 03:04 queuedata.json
[2025-10-16 04:20:18] -rwx------ 1 boinc boinc     36292 Oct 16 03:07 runpilot2-wrapper.sh
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc       100 Oct 16 04:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-16 04:20:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 16 04:15 run_atlas
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc       105 Oct 16 04:15 job.xml
[2025-10-16 04:20:18] -rw-r--r-- 2 boinc boinc 226298817 Oct 16 04:15 EVNT.46771634._000067.pool.root.1
[2025-10-16 04:20:18] -rw-r--r-- 2 boinc boinc    569677 Oct 16 04:15 input.tar.gz
[2025-10-16 04:20:18] -rw-r--r-- 2 boinc boinc     15120 Oct 16 04:15 start_atlas.sh
[2025-10-16 04:20:18] drwxrwx--x 2 boinc boinc      4096 Oct 16 04:15 shared
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc         0 Oct 16 04:15 boinc_setup_complete
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc      6376 Oct 16 04:15 init_data.xml
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc         0 Oct 16 04:15 boinc_lockfile
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc      2552 Oct 16 04:16 pandaJob.out
[2025-10-16 04:20:18] -rw------- 1 boinc boinc    974318 Oct 16 04:16 agis_schedconf.cvmfs.json
[2025-10-16 04:20:18] -rw------- 1 boinc boinc   1560740 Oct 16 04:16 agis_ddmendpoints.agis.ALL.json
[2025-10-16 04:20:18] drwx------ 5 boinc boinc      4096 Oct 16 04:16 pilot3
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc       523 Oct 16 04:17 boinc_task_state.xml
[2025-10-16 04:20:18] -rw------- 1 boinc boinc       953 Oct 16 04:17 memory_monitor_summary.json
[2025-10-16 04:20:18] -rw------- 1 boinc boinc     28542 Oct 16 04:17 log.46771637._005888.job.log.tgz.1
[2025-10-16 04:20:18] -rw------- 1 boinc boinc        95 Oct 16 04:19 pilot_heartbeat.json
[2025-10-16 04:20:18] -rw------- 1 boinc boinc      8367 Oct 16 04:19 heartbeat.json
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc        23 Oct 16 04:20 wrapper_checkpoint.txt
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc      8192 Oct 16 04:20 boinc_mmap_file
[2025-10-16 04:20:18] -rw------- 1 boinc boinc      4750 Oct 16 04:20 pilotlog.txt
[2025-10-16 04:20:18] -rw------- 1 boinc boinc     86310 Oct 16 04:20 log.46771637._005888.job.log.1
[2025-10-16 04:20:18] -rw------- 1 boinc boinc       188 Oct 16 04:20 output.list
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc       620 Oct 16 04:20 runtime_log
[2025-10-16 04:20:18] -rw------- 1 boinc boinc    133120 Oct 16 04:20 result.tar.gz
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc      8629 Oct 16 04:20 runtime_log.err
[2025-10-16 04:20:18] -rw------- 1 boinc boinc       649 Oct 16 04:20 4hzNDmYdRT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmoBXMDmXwBJLm.diag
[2025-10-16 04:20:18] -rw-r--r-- 1 boinc boinc      6300 Oct 16 04:20 stderr.txt
[2025-10-16 04:20:18] No HITS result produced
[2025-10-16 04:20:18]  *** Contents of shared directory: ***
[2025-10-16 04:20:18] total 221708
[2025-10-16 04:20:18] -rw-r--r-- 2 boinc boinc 226298817 Oct 16 04:15 ATLAS.root_0
[2025-10-16 04:20:18] -rw-r--r-- 2 boinc boinc    569677 Oct 16 04:15 input.tar.gz
[2025-10-16 04:20:18] -rw-r--r-- 2 boinc boinc     15120 Oct 16 04:15 start_atlas.sh
[2025-10-16 04:20:18] -rw------- 1 boinc boinc    133120 Oct 16 04:20 result.tar.gz
04:20:20 (85256): run_atlas exited; CPU time 34.220310
04:20:20 (85256): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN