Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:49:56 (6908): wrapper (7.7.26015): starting
07:49:56 (6908): wrapper: running run_atlas (--nthreads 8)
[2025-10-16 07:49:56] Arguments: --nthreads 8
[2025-10-16 07:49:56] Threads: 8
[2025-10-16 07:49:56] Checking for CVMFS
[2025-10-16 07:49:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-16 07:49:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-16 07:49:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-16 07:49:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-16 07:49:59] 2.11.2.0 25755 225951 140332 151760 2 108 24459029 25165824 4632 130560 0 129361565 99.881 69579069 3533 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-16 07:49:59] CVMFS is ok
[2025-10-16 07:49:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-16 07:49:59] Checking for apptainer binary...
[2025-10-16 07:49:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-16 07:49:59] Running /usr/bin/apptainer --version
[2025-10-16 07:50:00] apptainer version 1.3.2-1.el7
[2025-10-16 07:50:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-16 07:50:33] cg-vwn458.simple-grid.lan
[2025-10-16 07:50:33] apptainer works
[2025-10-16 07:50:33] Set ATHENA_PROC_NUMBER=8
[2025-10-16 07:50:33] Set ATHENA_CORE_NUMBER=8
[2025-10-16 07:50:33] Starting ATLAS job with PandaID=6846771913
[2025-10-16 07:50:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-16 11:51:40]  *** The last 200 lines of the pilot log: ***
[2025-10-16 11:51:40] 2025-10-16 09:50:29,540 | INFO     | time since job start (14183s) is within the limit (172800.0s)
[2025-10-16 11:51:40] 2025-10-16 09:50:29,757 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-16 11:51:40] 2025-10-16 09:50:29,758 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,760 | INFO     | using path: /var/lib/boinc/slots/20/PanDA_Pilot-6846771913/memory_monitor_summary.json (trf name=prmon)
[2025-10-16 11:51:40] 2025-10-16 09:50:29,760 | INFO     | extracted standard info from prmon json
[2025-10-16 11:51:40] 2025-10-16 09:50:29,760 | INFO     | extracted standard memory fields from prmon json
[2025-10-16 11:51:40] 2025-10-16 09:50:29,760 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-16 11:51:40] 2025-10-16 09:50:29,761 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-16 11:51:40] 2025-10-16 09:50:29,761 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-16 11:51:40] 2025-10-16 09:50:29,764 | INFO     | fitting pss+swap vs Time
[2025-10-16 11:51:40] 2025-10-16 09:50:29,765 | INFO     | sum of square deviations: 3438620752.0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,766 | INFO     | sum of deviations: 79710591915.0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,766 | INFO     | mean x: 1760601297.0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,767 | INFO     | mean y: 2434474.3094170406
[2025-10-16 11:51:40] 2025-10-16 09:50:29,767 | INFO     | -- intersect: -40810025413.441154
[2025-10-16 11:51:40] 2025-10-16 09:50:29,767 | INFO     | intersect: -40810025413.441154
[2025-10-16 11:51:40] 2025-10-16 09:50:29,767 | INFO     | chi2: 4.871569554143359
[2025-10-16 11:51:40] 2025-10-16 09:50:29,767 | INFO     | sum of square deviations: 3212467674.5
[2025-10-16 11:51:40] 2025-10-16 09:50:29,769 | INFO     | sum of deviations: 92722784558.50003
[2025-10-16 11:51:40] 2025-10-16 09:50:29,769 | INFO     | mean x: 1760601144.5
[2025-10-16 11:51:40] 2025-10-16 09:50:29,772 | INFO     | mean y: 2443061.9954128442
[2025-10-16 11:51:40] 2025-10-16 09:50:29,772 | INFO     | -- intersect: -50814516719.656105
[2025-10-16 11:51:40] 2025-10-16 09:50:29,772 | INFO     | intersect: -50814516719.656105
[2025-10-16 11:51:40] 2025-10-16 09:50:29,773 | INFO     | chi2: 4.084583216133473
[2025-10-16 11:51:40] 2025-10-16 09:50:29,773 | INFO     | current chi2=4.084583216133473 (change=16.154677240326773 %)
[2025-10-16 11:51:40] 2025-10-16 09:50:29,773 | INFO     | right removable region: 217
[2025-10-16 11:51:40] 2025-10-16 09:50:29,773 | INFO     | sum of square deviations: 3212467674.5
[2025-10-16 11:51:40] 2025-10-16 09:50:29,775 | INFO     | sum of deviations: 9130227704.000013
[2025-10-16 11:51:40] 2025-10-16 09:50:29,775 | INFO     | mean x: 1760601449.5
[2025-10-16 11:51:40] 2025-10-16 09:50:29,775 | INFO     | mean y: 2481976.9541284405
[2025-10-16 11:51:40] 2025-10-16 09:50:29,775 | INFO     | -- intersect: -5001363589.34543
[2025-10-16 11:51:40] 2025-10-16 09:50:29,775 | INFO     | intersect: -5001363589.34543
[2025-10-16 11:51:40] 2025-10-16 09:50:29,775 | INFO     | chi2: 0.9584958735194777
[2025-10-16 11:51:40] 2025-10-16 09:50:29,775 | INFO     | current chi2=0.9584958735194777 (change=80.32470104621088 %)
[2025-10-16 11:51:40] 2025-10-16 09:50:29,776 | INFO     | sum of square deviations: 2996454322.0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,777 | INFO     | sum of deviations: -3069532077.999996
[2025-10-16 11:51:40] 2025-10-16 09:50:29,777 | INFO     | mean x: 1760601602.0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,777 | INFO     | mean y: 2490570.3755868543
[2025-10-16 11:51:40] 2025-10-16 09:50:29,777 | INFO     | -- intersect: 1806029858.2063131
[2025-10-16 11:51:40] 2025-10-16 09:50:29,778 | INFO     | intersect: 1806029858.2063131
[2025-10-16 11:51:40] 2025-10-16 09:50:29,778 | INFO     | chi2: 0.8545360588199762
[2025-10-16 11:51:40] 2025-10-16 09:50:29,778 | INFO     | current chi2=0.8545360588199762 (change=10.846141081210297 %)
[2025-10-16 11:51:40] 2025-10-16 09:50:29,778 | INFO     | left removable region: 20
[2025-10-16 11:51:40] 2025-10-16 09:50:29,778 | INFO     | sum of square deviations: 2370641658.0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,779 | INFO     | sum of deviations: 6568831299.000001
[2025-10-16 11:51:40] 2025-10-16 09:50:29,780 | INFO     | mean x: 1760601724.0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,780 | INFO     | mean y: 2504427.2842639596
[2025-10-16 11:51:40] 2025-10-16 09:50:29,780 | INFO     | -- intersect: -4875961987.349442
[2025-10-16 11:51:40] 2025-10-16 09:50:29,780 | INFO     | intersect: -4875961987.349442
[2025-10-16 11:51:40] 2025-10-16 09:50:29,780 | INFO     | chi2: 0.0009633901887437394
[2025-10-16 11:51:40] 2025-10-16 09:50:29,780 | INFO     | -- intersect: -4875961987.349442
[2025-10-16 11:51:40] 2025-10-16 09:50:29,780 | INFO     | current memory leak: 2.77 B/s (using 197 data points, chi2=0.00)
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | ..............................
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | . Timing measurements:
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | . get job = 0 s
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | . initial setup = 9 s
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | . payload setup = 134 s
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | . stage-in = 0 s
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | . payload execution = 13757 s
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | . stage-out = 3 s
[2025-10-16 11:51:40] 2025-10-16 09:50:29,781 | INFO     | . log creation = 1 s
[2025-10-16 11:51:40] 2025-10-16 09:50:29,782 | INFO     | ..............................
[2025-10-16 11:51:40] 2025-10-16 09:50:29,926 | INFO     | 
[2025-10-16 11:51:40] 2025-10-16 09:50:29,926 | INFO     | job summary report
[2025-10-16 11:51:40] 2025-10-16 09:50:29,926 | INFO     | --------------------------------------------------
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | PanDA job id: 6846771913
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | task id: 46771637
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | errors: (none)
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | pilot state: finished 
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | transexitcode: 0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | exeerrorcode: 0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | exeerrordiag: 
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | exitcode: 0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | exitmsg: OK
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | cpuconsumptiontime: 51153 s
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | nevents: 400
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | neventsw: 0
[2025-10-16 11:51:40] 2025-10-16 09:50:29,927 | INFO     | pid: 17611
[2025-10-16 11:51:40] 2025-10-16 09:50:29,928 | INFO     | pgrp: 17611
[2025-10-16 11:51:40] 2025-10-16 09:50:29,928 | INFO     | corecount: 8
[2025-10-16 11:51:40] 2025-10-16 09:50:29,928 | INFO     | event service: False
[2025-10-16 11:51:40] 2025-10-16 09:50:29,928 | INFO     | sizes: {0: 2348923, 11: 2348923, 22: 2348951, 33: 2348979, 43: 2349035, 54: 2349063, 65: 2349219, 75: 2349247, 86: 2349275, 94: 2349565, 97: 2349593, 13895: 237985
[2025-10-16 11:51:40] 2025-10-16 09:50:29,928 | INFO     | --------------------------------------------------
[2025-10-16 11:51:40] 2025-10-16 09:50:29,928 | INFO     | 
[2025-10-16 11:51:40] 2025-10-16 09:50:29,928 | INFO     | executing command: ls -lF /var/lib/boinc/slots/20
[2025-10-16 11:51:40] 2025-10-16 09:50:30,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,311 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,311 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,311 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-16 11:51:40] 2025-10-16 09:50:30,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-16 11:51:40] 2025-10-16 09:50:30,313 | INFO     | job 6846771913 has completed (purged errors)
[2025-10-16 11:51:40] 2025-10-16 09:50:30,313 | INFO     | overall cleanup function is called
[2025-10-16 11:51:40] 2025-10-16 09:50:31,321 | INFO     | --- collectZombieJob: --- 10, [17611]
[2025-10-16 11:51:40] 2025-10-16 09:50:31,321 | INFO     | zombie collector waiting for pid 17611
[2025-10-16 11:51:40] 2025-10-16 09:50:31,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-16 11:51:40] 2025-10-16 09:50:31,322 | INFO     | collected zombie processes
[2025-10-16 11:51:40] 2025-10-16 09:50:31,322 | INFO     | will attempt to kill all subprocesses of pid=17611
[2025-10-16 11:51:40] 2025-10-16 09:50:31,436 | INFO     | process IDs to be killed: [17611] (in reverse order)
[2025-10-16 11:51:40] 2025-10-16 09:50:32,164 | WARNING  | found no corresponding commands to process id(s)
[2025-10-16 11:51:40] 2025-10-16 09:50:32,164 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-16 11:51:40] 2025-10-16 09:50:32,167 | INFO     | did not find any defunct processes belonging to 17611
[2025-10-16 11:51:40] 2025-10-16 09:50:32,169 | INFO     | did not find any defunct processes belonging to 17611
[2025-10-16 11:51:40] 2025-10-16 09:50:32,170 | INFO     | ready for new job
[2025-10-16 11:51:40] 2025-10-16 09:50:32,170 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-16 11:51:40] 2025-10-16 09:50:32,172 | INFO     | ***************************************
[2025-10-16 11:51:40] 2025-10-16 09:50:32,172 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-16 11:51:40] 2025-10-16 09:50:32,172 | INFO     | ***************************************
[2025-10-16 11:51:40] 2025-10-16 09:50:32,172 | INFO     | 
[2025-10-16 11:51:40] 2025-10-16 09:50:32,172 | INFO     | pilot is running in a VM
[2025-10-16 11:51:40] 2025-10-16 09:50:32,173 | INFO     | architecture information:
[2025-10-16 11:51:40] 2025-10-16 09:50:32,184 | INFO     | executing command: cat /etc/os-release
[2025-10-16 11:51:40] 2025-10-16 09:50:32,389 | INFO     | cat /etc/os-release:
[2025-10-16 11:51:40] NAME="CentOS Linux"
[2025-10-16 11:51:40] VERSION="7 (Core)"
[2025-10-16 11:51:40] ID="centos"
[2025-10-16 11:51:40] ID_LIKE="rhel fedora"
[2025-10-16 11:51:40] VERSION_ID="7"
[2025-10-16 11:51:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-16 11:51:40] ANSI_COLOR="0;31"
[2025-10-16 11:51:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-16 11:51:40] HOME_URL="https://www.centos.org/"
[2025-10-16 11:51:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-16 11:51:40] 
[2025-10-16 11:51:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-16 11:51:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-16 11:51:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-16 11:51:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-16 11:51:40] 
[2025-10-16 11:51:40] 2025-10-16 09:50:32,389 | INFO     | ***************************************
[2025-10-16 11:51:40] 2025-10-16 09:50:32,892 | INFO     | executing command: df -mP /var/lib/boinc/slots/20
[2025-10-16 11:51:40] 2025-10-16 09:50:33,077 | INFO     | sufficient remaining disk space (495986933760 B)
[2025-10-16 11:51:40] 2025-10-16 09:50:33,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-16 11:51:40] 2025-10-16 09:50:33,077 | INFO     | current server update state: UPDATING_FINAL
[2025-10-16 11:51:40] 2025-10-16 09:50:33,077 | INFO     | update_server=False
[2025-10-16 11:51:40] 2025-10-16 09:50:33,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-16 11:51:40] 2025-10-16 09:50:33,084 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-16 11:51:40] 2025-10-16 09:50:33,493 | INFO     | all payload control threads have been joined
[2025-10-16 11:51:40] 2025-10-16 09:50:33,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-16 11:51:40] 2025-10-16 09:50:33,948 | INFO     | aborting loop
[2025-10-16 11:51:40] 2025-10-16 09:50:34,083 | INFO     | [job] retrieve thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:34,134 | INFO     | all job control threads have been joined
[2025-10-16 11:51:40] 2025-10-16 09:50:34,158 | INFO     | all data control threads have been joined
[2025-10-16 11:51:40] 2025-10-16 09:50:34,422 | INFO     | [job] create_data_payload thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:34,499 | INFO     | [payload] control thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:34,511 | INFO     | [payload] execute_payloads thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:34,653 | INFO     | [job] validate thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:34,847 | INFO     | [payload] failed_post thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:34,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-16 11:51:40] 2025-10-16 09:50:34,953 | INFO     | [job] job monitor thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:35,090 | INFO     | [data] copytool_out thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:35,140 | INFO     | [job] control thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:35,165 | INFO     | [data] control thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:35,289 | INFO     | [payload] validate_post thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:35,451 | INFO     | [payload] validate_pre thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:35,584 | INFO     | [data] copytool_in thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:35,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-16 11:51:40] 2025-10-16 09:50:35,948 | INFO     | [job] queue monitor thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:39,807 | INFO     | [data] queue_monitor thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:50:43,803 | INFO     | job.realtimelogging is not enabled
[2025-10-16 11:51:40] 2025-10-16 09:50:44,809 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-16 11:51:40] 2025-10-16 09:51:02,728 | INFO     | PID=11023 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-16 11:51:40] 2025-10-16 09:51:02,728 | INFO     | .. there are 9 such processes running
[2025-10-16 11:51:40] 2025-10-16 09:51:02,729 | INFO     | found 0 job(s) in 20 queues
[2025-10-16 11:51:40] 2025-10-16 09:51:02,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-16 11:51:40] 2025-10-16 09:51:02,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-16 11:51:40] 2025-10-16 09:51:30,573 | INFO     | [monitor] cgroup control has ended
[2025-10-16 11:51:40] 2025-10-16 09:51:31,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140104605271872)>', '<ExcThread(monitor, started 140104039393024)>']
[2025-10-16 11:51:40] 2025-10-16 09:51:31,901 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-16 11:51:40] 2025-10-16 09:51:31,901 | INFO     | [monitor] control thread has ended
[2025-10-16 11:51:40] 2025-10-16 09:51:36,151 | INFO     | all workflow threads have been joined
[2025-10-16 11:51:40] 2025-10-16 09:51:36,151 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-16 11:51:40] 2025-10-16 09:51:36,152 | INFO     | traces error code: 0
[2025-10-16 11:51:40] 2025-10-16 09:51:36,152 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-16 11:51:40] 2025-10-16 09:51:36,599 [wrapper] ==== pilot stdout END ====
[2025-10-16 11:51:40] 2025-10-16 09:51:36,651 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-16 11:51:40] 2025-10-16 09:51:36,740 [wrapper] pilotpid: 11023
[2025-10-16 11:51:40] 2025-10-16 09:51:36,792 [wrapper] Pilot exit status: 0
[2025-10-16 11:51:40] 2025-10-16 09:51:37,236 [wrapper] pandaids: 6846771913
[2025-10-16 11:51:40] 2025-10-16 09:51:37,593 [wrapper] cleanup supervisor_pilot  7011 11024
[2025-10-16 11:51:40] 2025-10-16 09:51:37,618 [wrapper] Test setup, not cleaning
[2025-10-16 11:51:40] 2025-10-16 09:51:37,685 [wrapper] apfmon messages muted
[2025-10-16 11:51:40] 2025-10-16 09:51:37,805 [wrapper] ==== wrapper stdout END ====
[2025-10-16 11:51:40] 2025-10-16 09:51:37,826 [wrapper] ==== wrapper stderr END ====
[2025-10-16 11:51:40]  *** Error codes and diagnostics ***
[2025-10-16 11:51:40]     "exeErrorCode": 0,
[2025-10-16 11:51:40]     "exeErrorDiag": "",
[2025-10-16 11:51:40]     "pilotErrorCode": 0,
[2025-10-16 11:51:40]     "pilotErrorDiag": "",
[2025-10-16 11:51:40]  *** Listing of results directory ***
[2025-10-16 11:51:40] total 438008
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc    557409 Oct 16 01:33 pilot3.tar.gz
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc      5112 Oct 16 01:55 queuedata.json
[2025-10-16 11:51:40] -rwx------. 1 boinc boinc     36292 Oct 16 01:56 runpilot2-wrapper.sh
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc       100 Oct 16 07:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-16 11:51:40] -rwxr-xr-x. 1 boinc boinc      7986 Oct 16 07:49 run_atlas
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc       105 Oct 16 07:49 job.xml
[2025-10-16 11:51:40] -rw-r--r--. 2 boinc boinc 228799812 Oct 16 07:49 EVNT.46771634._000204.pool.root.1
[2025-10-16 11:51:40] -rw-r--r--. 2 boinc boinc     15120 Oct 16 07:49 start_atlas.sh
[2025-10-16 11:51:40] drwxrwx--x. 2 boinc boinc        68 Oct 16 07:49 shared
[2025-10-16 11:51:40] -rw-r--r--. 2 boinc boinc    569680 Oct 16 07:49 input.tar.gz
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc      6391 Oct 16 07:49 init_data.xml
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc         0 Oct 16 07:49 boinc_lockfile
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc      2554 Oct 16 07:50 pandaJob.out
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc    973556 Oct 16 07:53 agis_schedconf.cvmfs.json
[2025-10-16 11:51:40] drwx------. 5 boinc boinc      4096 Oct 16 07:54 pilot3
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc 211079379 Oct 16 11:47 HITS.46771637._002564.pool.root.1
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc       531 Oct 16 11:47 boinc_task_state.xml
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc      1018 Oct 16 11:48 memory_monitor_summary.json
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc   1560740 Oct 16 11:48 agis_ddmendpoints.agis.ALL.json
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc    458290 Oct 16 11:48 log.46771637._002564.job.log.tgz.1
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc      7780 Oct 16 11:50 heartbeat.json
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc        95 Oct 16 11:51 pilot_heartbeat.json
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc        28 Oct 16 11:51 wrapper_checkpoint.txt
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc      8192 Oct 16 11:51 boinc_mmap_file
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc      4957 Oct 16 11:51 pilotlog.txt
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc   1917397 Oct 16 11:51 log.46771637._002564.job.log.1
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc       357 Oct 16 11:51 output.list
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc       620 Oct 16 11:51 runtime_log
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc   2396160 Oct 16 11:51 result.tar.gz
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc      8717 Oct 16 11:51 runtime_log.err
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc       657 Oct 16 11:51 0pkMDmFXQT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmlqWMDmRCy7Nn.diag
[2025-10-16 11:51:40] -rw-r--r--. 1 boinc boinc     20779 Oct 16 11:51 stderr.txt
[2025-10-16 11:51:40] HITS file was successfully produced:
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc 211079379 Oct 16 11:47 shared/HITS.pool.root.1
[2025-10-16 11:51:40]  *** Contents of shared directory: ***
[2025-10-16 11:51:40] total 432492
[2025-10-16 11:51:40] -rw-r--r--. 2 boinc boinc 228799812 Oct 16 07:49 ATLAS.root_0
[2025-10-16 11:51:40] -rw-r--r--. 2 boinc boinc     15120 Oct 16 07:49 start_atlas.sh
[2025-10-16 11:51:40] -rw-r--r--. 2 boinc boinc    569680 Oct 16 07:49 input.tar.gz
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc 211079379 Oct 16 11:47 HITS.pool.root.1
[2025-10-16 11:51:40] -rw-------. 1 boinc boinc   2396160 Oct 16 11:51 result.tar.gz
11:51:42 (6908): run_atlas exited; CPU time 51307.217640
11:51:42 (6908): called boinc_finish(0)

</stderr_txt>
]]>

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