Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
05:48:07 (391183): wrapper (7.7.26015): starting
05:48:07 (391183): wrapper: running run_atlas (--nthreads 6)
[2025-10-16 05:48:07] Arguments: --nthreads 6
[2025-10-16 05:48:07] Threads: 6
[2025-10-16 05:48:07] Checking for CVMFS
[2025-10-16 05:48:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-16 05:48:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-16 05:48:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-16 05:48:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-16 05:48:07] 2.11.5.0 55760 225 53092 151758 0 188 3040848 4194304 1827 130560 0 746785 99.995 12069 130 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2025-10-16 05:48:07] CVMFS is ok
[2025-10-16 05:48:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-16 05:48:07] Checking for apptainer binary...
[2025-10-16 05:48:07] apptainer is not installed, using version from CVMFS
[2025-10-16 05:48:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-16 05:48:07] boinc-b450f
[2025-10-16 05:48:07] apptainer works
[2025-10-16 05:48:07] Set ATHENA_PROC_NUMBER=6
[2025-10-16 05:48:07] Set ATHENA_CORE_NUMBER=6
[2025-10-16 05:48:07] Starting ATLAS job with PandaID=6846770874
[2025-10-16 05:48:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-16 06:56:23]  *** The last 200 lines of the pilot log: ***
[2025-10-16 06:56:23]  scope=mc23_13p6TeV
[2025-10-16 06:56:23]  status=None
[2025-10-16 06:56:23]  status_code=0
[2025-10-16 06:56:23]  storage_token=
[2025-10-16 06:56:23]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6846770874/log.46771637._002006.job.log.tgz.1
[2025-10-16 06:56:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/07/log.46771637._002006.job.log.tgz.1
[2025-10-16 06:56:23]  workdir=None
[2025-10-16 06:56:23] ]
[2025-10-16 06:56:23] 2025-10-16 04:55:21,728 | INFO     | transferring file log.46771637._002006.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6846770874/log.46771637._002006.job.log.tgz.1 to /var/lib/boinc
[2025-10-16 06:56:23] 2025-10-16 04:55:21,728 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6846770874/log.46771637._002006.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.467716
[2025-10-16 06:56:23] 2025-10-16 04:55:21,737 | INFO     | adding to output.list: log.46771637._002006.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/07/log.46771637._002006.job.log.tg
[2025-10-16 06:56:23] 2025-10-16 04:55:21,737 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-16 06:56:23] 2025-10-16 04:55:21,737 | INFO     | summary of transferred files:
[2025-10-16 06:56:23] 2025-10-16 04:55:21,737 | INFO     |  -- lfn=log.46771637._002006.job.log.tgz.1, status_code=0, status=transferred
[2025-10-16 06:56:23] 2025-10-16 04:55:21,738 | INFO     | stage-out finished correctly
[2025-10-16 06:56:23] 2025-10-16 04:55:21,855 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-16 06:56:23] 2025-10-16 04:55:23,201 | INFO     | time since job start (4031s) is within the limit (172800.0s)
[2025-10-16 06:56:23] 2025-10-16 04:55:23,555 | WARNING  | process 403814 can no longer be monitored (due to stat problems) - aborting
[2025-10-16 06:56:23] 2025-10-16 04:55:23,555 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6846770874/memory_monitor_summary.json (trf name=prmon)
[2025-10-16 06:56:23] 2025-10-16 04:55:23,635 | INFO     | number of running child processes to parent process 403814: 1
[2025-10-16 06:56:23] 2025-10-16 04:55:23,635 | INFO     | maximum number of monitored processes: 6
[2025-10-16 06:56:23] 2025-10-16 04:55:24,258 | INFO     | job 6846770874 has state=finished
[2025-10-16 06:56:23] 2025-10-16 04:55:24,258 | INFO     | preparing for final server update for job 6846770874 in state='finished'
[2025-10-16 06:56:23] 2025-10-16 04:55:24,259 | INFO     | this job has now completed (state=finished)
[2025-10-16 06:56:23] 2025-10-16 04:55:24,259 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-16 06:56:23] 2025-10-16 04:55:24,259 | INFO     | log transfer has been attempted: DONE
[2025-10-16 06:56:23] 2025-10-16 04:55:24,259 | INFO     | job 6846770874 has finished - writing final server update
[2025-10-16 06:56:23] 2025-10-16 04:55:24,259 | INFO     | total number of processed events: 400 (read)
[2025-10-16 06:56:23] 2025-10-16 04:55:24,259 | INFO     | executing command: lscpu
[2025-10-16 06:56:23] 2025-10-16 04:55:24,273 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-16 06:56:23] 2025-10-16 04:55:24,312 | INFO     | PID=395007 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-16 06:56:23] 2025-10-16 04:55:24,312 | INFO     | .. there are 3 such processes running
[2025-10-16 06:56:23] 2025-10-16 04:55:25,313 | INFO     | time since job start (4033s) is within the limit (172800.0s)
[2025-10-16 06:56:23] 2025-10-16 04:55:26,138 | INFO     | monitor loop #309: job 0:6846770874 is in state 'finished'
[2025-10-16 06:56:23] 2025-10-16 04:55:26,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-16 06:56:23] 2025-10-16 04:55:26,293 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-16 06:56:23] 2025-10-16 04:55:26,295 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3847.3970000000004
[2025-10-16 06:56:23] 2025-10-16 04:55:26,298 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6846770874/memory_monitor_summary.json (trf name=prmon)
[2025-10-16 06:56:23] 2025-10-16 04:55:26,298 | INFO     | extracted standard info from prmon json
[2025-10-16 06:56:23] 2025-10-16 04:55:26,298 | INFO     | extracted standard memory fields from prmon json
[2025-10-16 06:56:23] 2025-10-16 04:55:26,299 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-16 06:56:23] 2025-10-16 04:55:26,299 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-16 06:56:23] 2025-10-16 04:55:26,299 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-16 06:56:23] 2025-10-16 04:55:26,300 | INFO     | fitting pss+swap vs Time
[2025-10-16 06:56:23] 2025-10-16 04:55:26,300 | INFO     | sum of square deviations: 63666310.0
[2025-10-16 06:56:23] 2025-10-16 04:55:26,300 | INFO     | sum of deviations: -2882656930.9999995
[2025-10-16 06:56:23] 2025-10-16 04:55:26,300 | INFO     | mean x: 1760588582.0
[2025-10-16 06:56:23] 2025-10-16 04:55:26,300 | INFO     | mean y: 2459267.2881355933
[2025-10-16 06:56:23] 2025-10-16 04:55:26,300 | INFO     | -- intersect: 79717663093.95503
[2025-10-16 06:56:23] 2025-10-16 04:55:26,300 | INFO     | intersect: 79717663093.95503
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | chi2: 0.016007978563217826
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | -- intersect: 79717663093.95503
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | current memory leak: -45.28 B/s (using 59 data points, chi2=0.02)
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | could have reported an average CPU frequency of 3992 MHz (6 samples)
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | ..............................
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | . Timing measurements:
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | . get job = 0 s
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | . initial setup = 1 s
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | . payload setup = 1 s
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | . stage-in = 0 s
[2025-10-16 06:56:23] 2025-10-16 04:55:26,301 | INFO     | . payload execution = 4010 s
[2025-10-16 06:56:23] 2025-10-16 04:55:26,302 | INFO     | . stage-out = 0 s
[2025-10-16 06:56:23] 2025-10-16 04:55:26,302 | INFO     | . log creation = 0 s
[2025-10-16 06:56:23] 2025-10-16 04:55:26,302 | INFO     | ..............................
[2025-10-16 06:56:23] 2025-10-16 04:55:26,363 | INFO     | 
[2025-10-16 06:56:23] 2025-10-16 04:55:26,363 | INFO     | job summary report
[2025-10-16 06:56:23] 2025-10-16 04:55:26,363 | INFO     | --------------------------------------------------
[2025-10-16 06:56:23] 2025-10-16 04:55:26,363 | INFO     | PanDA job id: 6846770874
[2025-10-16 06:56:23] 2025-10-16 04:55:26,363 | INFO     | task id: 46771637
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | errors: (none)
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | pilot state: finished 
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | transexitcode: 0
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | exeerrorcode: 0
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | exeerrordiag: 
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | exitcode: 0
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | exitmsg: OK
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | cpuconsumptiontime: 22668 s
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | nevents: 400
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | neventsw: 0
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | pid: 403814
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | pgrp: 403814
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | corecount: 6
[2025-10-16 06:56:23] 2025-10-16 04:55:26,364 | INFO     | event service: False
[2025-10-16 06:56:23] 2025-10-16 04:55:26,365 | INFO     | sizes: {0: 2348091, 1: 2348954, 2: 2349216, 11: 2349244, 4015: 2375237, 4017: 2384433, 4021: 2384571}
[2025-10-16 06:56:23] 2025-10-16 04:55:26,365 | INFO     | --------------------------------------------------
[2025-10-16 06:56:23] 2025-10-16 04:55:26,365 | INFO     | 
[2025-10-16 06:56:23] 2025-10-16 04:55:26,365 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,373 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | job 6846770874 has completed (purged errors)
[2025-10-16 06:56:23] 2025-10-16 04:55:26,374 | INFO     | overall cleanup function is called
[2025-10-16 06:56:23] 2025-10-16 04:55:27,380 | INFO     | --- collectZombieJob: --- 10, [403814]
[2025-10-16 06:56:23] 2025-10-16 04:55:27,381 | INFO     | zombie collector waiting for pid 403814
[2025-10-16 06:56:23] 2025-10-16 04:55:27,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-16 06:56:23] 2025-10-16 04:55:27,381 | INFO     | collected zombie processes
[2025-10-16 06:56:23] 2025-10-16 04:55:27,381 | INFO     | will attempt to kill all subprocesses of pid=403814
[2025-10-16 06:56:23] 2025-10-16 04:55:27,461 | INFO     | process IDs to be killed: [403814] (in reverse order)
[2025-10-16 06:56:23] 2025-10-16 04:55:27,485 | WARNING  | found no corresponding commands to process id(s)
[2025-10-16 06:56:23] 2025-10-16 04:55:27,485 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-16 06:56:23] 2025-10-16 04:55:27,487 | INFO     | did not find any defunct processes belonging to 403814
[2025-10-16 06:56:23] 2025-10-16 04:55:27,489 | INFO     | did not find any defunct processes belonging to 403814
[2025-10-16 06:56:23] 2025-10-16 04:55:27,489 | INFO     | ready for new job
[2025-10-16 06:56:23] 2025-10-16 04:55:27,489 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-16 06:56:23] 2025-10-16 04:55:27,489 | INFO     | ***************************************
[2025-10-16 06:56:23] 2025-10-16 04:55:27,489 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-16 06:56:23] 2025-10-16 04:55:27,490 | INFO     | ***************************************
[2025-10-16 06:56:23] 2025-10-16 04:55:27,490 | INFO     | 
[2025-10-16 06:56:23] 2025-10-16 04:55:27,490 | INFO     | architecture information:
[2025-10-16 06:56:23] 2025-10-16 04:55:27,490 | INFO     | executing command: cat /etc/os-release
[2025-10-16 06:56:23] 2025-10-16 04:55:27,497 | INFO     | cat /etc/os-release:
[2025-10-16 06:56:23] NAME="CentOS Linux"
[2025-10-16 06:56:23] VERSION="7 (Core)"
[2025-10-16 06:56:23] ID="centos"
[2025-10-16 06:56:23] ID_LIKE="rhel fedora"
[2025-10-16 06:56:23] VERSION_ID="7"
[2025-10-16 06:56:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-16 06:56:23] ANSI_COLOR="0;31"
[2025-10-16 06:56:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-16 06:56:23] HOME_URL="https://www.centos.org/"
[2025-10-16 06:56:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-16 06:56:23] 
[2025-10-16 06:56:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-16 06:56:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-16 06:56:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-16 06:56:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-16 06:56:23] 
[2025-10-16 06:56:23] 2025-10-16 04:55:27,497 | INFO     | ***************************************
[2025-10-16 06:56:23] 2025-10-16 04:55:27,999 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-16 06:56:23] 2025-10-16 04:55:28,007 | INFO     | sufficient remaining disk space (16804478976 B)
[2025-10-16 06:56:23] 2025-10-16 04:55:28,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-16 06:56:23] 2025-10-16 04:55:28,008 | INFO     | current server update state: UPDATING_FINAL
[2025-10-16 06:56:23] 2025-10-16 04:55:28,008 | INFO     | update_server=False
[2025-10-16 06:56:23] 2025-10-16 04:55:28,008 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-16 06:56:23] 2025-10-16 04:55:28,008 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-16 06:56:23] 2025-10-16 04:55:28,008 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-16 06:56:23] 2025-10-16 04:55:28,008 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-16 06:56:23] 2025-10-16 04:55:28,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-16 06:56:23] 2025-10-16 04:55:28,008 | INFO     | aborting loop
[2025-10-16 06:56:23] 2025-10-16 04:55:28,271 | INFO     | all job control threads have been joined
[2025-10-16 06:56:23] 2025-10-16 04:55:28,468 | INFO     | all data control threads have been joined
[2025-10-16 06:56:23] 2025-10-16 04:55:29,013 | INFO     | [job] retrieve thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,013 | INFO     | [job] queue monitor thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,014 | INFO     | [job] job monitor thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,184 | INFO     | [payload] validate_pre thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,194 | INFO     | [job] validate thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,277 | INFO     | [job] control thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,284 | INFO     | [data] copytool_in thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,287 | INFO     | [job] create_data_payload thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,474 | INFO     | [data] control thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,484 | INFO     | all payload control threads have been joined
[2025-10-16 06:56:23] 2025-10-16 04:55:29,612 | INFO     | [payload] execute_payloads thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:29,953 | INFO     | [payload] failed_post thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:30,009 | INFO     | [data] copytool_out thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:30,283 | INFO     | [payload] validate_post thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:30,490 | INFO     | [payload] control thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:32,014 | INFO     | [data] queue_monitor thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:38,324 | INFO     | job.realtimelogging is not enabled
[2025-10-16 06:56:23] 2025-10-16 04:55:39,330 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-16 06:56:23] 2025-10-16 04:55:58,482 | INFO     | PID=395007 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-16 06:56:23] 2025-10-16 04:55:58,482 | INFO     | .. there are 3 such processes running
[2025-10-16 06:56:23] 2025-10-16 04:55:58,483 | INFO     | found 0 job(s) in 20 queues
[2025-10-16 06:56:23] 2025-10-16 04:55:58,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-16 06:56:23] 2025-10-16 04:55:58,483 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-16 06:56:23] 2025-10-16 04:56:17,784 | INFO     | [monitor] cgroup control has ended
[2025-10-16 06:56:23] 2025-10-16 04:56:17,964 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140318648141632)>', '<ExcThread(monitor, started 140318116669184)>']
[2025-10-16 06:56:23] 2025-10-16 04:56:18,569 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-16 06:56:23] 2025-10-16 04:56:18,569 | INFO     | [monitor] control thread has ended
[2025-10-16 06:56:23] 2025-10-16 04:56:22,973 | INFO     | all workflow threads have been joined
[2025-10-16 06:56:23] 2025-10-16 04:56:22,973 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-16 06:56:23] 2025-10-16 04:56:22,973 | INFO     | traces error code: 0
[2025-10-16 06:56:23] 2025-10-16 04:56:22,974 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-16 06:56:23] 2025-10-16 04:56:23,031 [wrapper] ==== pilot stdout END ====
[2025-10-16 06:56:23] 2025-10-16 04:56:23,032 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-16 06:56:23] 2025-10-16 04:56:23,033 [wrapper] pilotpid: 395007
[2025-10-16 06:56:23] 2025-10-16 04:56:23,034 [wrapper] Pilot exit status: 0
[2025-10-16 06:56:23] 2025-10-16 04:56:23,039 [wrapper] pandaids: 6846770874
[2025-10-16 06:56:23] 2025-10-16 04:56:23,072 [wrapper] cleanup supervisor_pilot  466250 395008
[2025-10-16 06:56:23] 2025-10-16 04:56:23,073 [wrapper] Test setup, not cleaning
[2025-10-16 06:56:23] 2025-10-16 04:56:23,074 [wrapper] apfmon messages muted
[2025-10-16 06:56:23] 2025-10-16 04:56:23,076 [wrapper] ==== wrapper stdout END ====
[2025-10-16 06:56:23] 2025-10-16 04:56:23,077 [wrapper] ==== wrapper stderr END ====
[2025-10-16 06:56:23]  *** Error codes and diagnostics ***
[2025-10-16 06:56:23]     "exeErrorCode": 0,
[2025-10-16 06:56:23]     "exeErrorDiag": "",
[2025-10-16 06:56:23]     "pilotErrorCode": 0,
[2025-10-16 06:56:23]     "pilotErrorDiag": "",
[2025-10-16 06:56:23]  *** Listing of results directory ***
[2025-10-16 06:56:23] total 425171
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc    557409 Oct 16 01:33 pilot3.tar.gz
[2025-10-16 06:56:23] -rwx------ 1 boinc boinc     36292 Oct 16 01:46 runpilot2-wrapper.sh
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc      5112 Oct 16 01:49 queuedata.json
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc       100 Oct 16 05:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-16 06:56:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 16 05:48 run_atlas
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc       105 Oct 16 05:48 job.xml
[2025-10-16 06:56:23] -rw-r--r-- 2 boinc boinc     15120 Oct 16 05:48 start_atlas.sh
[2025-10-16 06:56:23] drwxrwx--x 2 boinc boinc         5 Oct 16 05:48 shared
[2025-10-16 06:56:23] -rw-r--r-- 2 boinc boinc    569669 Oct 16 05:48 input.tar.gz
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc      6795 Oct 16 05:48 init_data.xml
[2025-10-16 06:56:23] -rw-r--r-- 2 boinc boinc 230424567 Oct 16 05:48 EVNT.46771634._000182.pool.root.1
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc         0 Oct 16 05:48 boinc_lockfile
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc      2552 Oct 16 05:48 pandaJob.out
[2025-10-16 06:56:23] -rw------- 1 boinc boinc    974318 Oct 16 05:48 agis_schedconf.cvmfs.json
[2025-10-16 06:56:23] -rw------- 1 boinc boinc   1560740 Oct 16 05:48 agis_ddmendpoints.agis.ALL.json
[2025-10-16 06:56:23] drwx------ 5 boinc boinc        22 Oct 16 05:48 pilot3
[2025-10-16 06:56:23] -rw------- 1 boinc boinc 203010771 Oct 16 06:54 HITS.46771637._002006.pool.root.1
[2025-10-16 06:56:23] -rw------- 1 boinc boinc      1035 Oct 16 06:55 memory_monitor_summary.json
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc       530 Oct 16 06:55 boinc_task_state.xml
[2025-10-16 06:56:23] -rw------- 1 boinc boinc    280987 Oct 16 06:55 log.46771637._002006.job.log.tgz.1
[2025-10-16 06:56:23] -rw------- 1 boinc boinc      7764 Oct 16 06:55 heartbeat.json
[2025-10-16 06:56:23] -rw------- 1 boinc boinc        95 Oct 16 06:55 pilot_heartbeat.json
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc        27 Oct 16 06:56 wrapper_checkpoint.txt
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc      8192 Oct 16 06:56 boinc_mmap_file
[2025-10-16 06:56:23] -rw------- 1 boinc boinc      4901 Oct 16 06:56 pilotlog.txt
[2025-10-16 06:56:23] -rw------- 1 boinc boinc    615226 Oct 16 06:56 log.46771637._002006.job.log.1
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc      8802 Oct 16 06:56 runtime_log.err
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc       620 Oct 16 06:56 runtime_log
[2025-10-16 06:56:23] -rw------- 1 boinc boinc    911360 Oct 16 06:56 result.tar.gz
[2025-10-16 06:56:23] -rw------- 1 boinc boinc       357 Oct 16 06:56 output.list
[2025-10-16 06:56:23] -rw------- 1 boinc boinc       657 Oct 16 06:56 HxINDm9MQT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrEoNDmlSdUZm.diag
[2025-10-16 06:56:23] -rw-r--r-- 1 boinc boinc     21714 Oct 16 06:56 stderr.txt
[2025-10-16 06:56:23] HITS file was successfully produced:
[2025-10-16 06:56:23] -rw------- 1 boinc boinc 203010771 Oct 16 06:54 shared/HITS.pool.root.1
[2025-10-16 06:56:23]  *** Contents of shared directory: ***
[2025-10-16 06:56:23] total 424108
[2025-10-16 06:56:23] -rw-r--r-- 2 boinc boinc     15120 Oct 16 05:48 start_atlas.sh
[2025-10-16 06:56:23] -rw-r--r-- 2 boinc boinc    569669 Oct 16 05:48 input.tar.gz
[2025-10-16 06:56:23] -rw-r--r-- 2 boinc boinc 230424567 Oct 16 05:48 ATLAS.root_0
[2025-10-16 06:56:23] -rw------- 1 boinc boinc 203010771 Oct 16 06:54 HITS.pool.root.1
[2025-10-16 06:56:23] -rw------- 1 boinc boinc    911360 Oct 16 06:56 result.tar.gz
06:56:24 (391183): run_atlas exited; CPU time 22719.271540
06:56:24 (391183): called boinc_finish(0)

</stderr_txt>
]]>

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