Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
04:40:08 (312963): wrapper (7.7.26015): starting
04:40:08 (312963): wrapper: running run_atlas (--nthreads 6)
[2025-10-16 04:40:08] Arguments: --nthreads 6
[2025-10-16 04:40:08] Threads: 6
[2025-10-16 04:40:08] Checking for CVMFS
[2025-10-16 04:40:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-16 04:40:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-16 04:40:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-16 04:40:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-16 04:40:11] 2.11.5.0 55760 157 51444 151756 0 188 3025377 4194305 1836 130560 0 577920 99.996 8062 95 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2025-10-16 04:40:11] CVMFS is ok
[2025-10-16 04:40:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-16 04:40:11] Checking for apptainer binary...
[2025-10-16 04:40:11] apptainer is not installed, using version from CVMFS
[2025-10-16 04:40:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-16 04:40:11] boinc-b450f
[2025-10-16 04:40:11] apptainer works
[2025-10-16 04:40:11] Set ATHENA_PROC_NUMBER=6
[2025-10-16 04:40:11] Set ATHENA_CORE_NUMBER=6
[2025-10-16 04:40:11] Starting ATLAS job with PandaID=6846769962
[2025-10-16 04:40:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-16 05:54:45]  *** The last 200 lines of the pilot log: ***
[2025-10-16 05:54:45]  protocol_id=None
[2025-10-16 05:54:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-16 05:54:45]  replicas=None
[2025-10-16 05:54:45]  scope=mc23_13p6TeV
[2025-10-16 05:54:45]  status=None
[2025-10-16 05:54:45]  status_code=0
[2025-10-16 05:54:45]  storage_token=
[2025-10-16 05:54:45]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6846769962/log.46771637._001768.job.log.tgz.1
[2025-10-16 05:54:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/79/log.46771637._001768.job.log.tgz.1
[2025-10-16 05:54:45]  workdir=None
[2025-10-16 05:54:45] ]
[2025-10-16 05:54:45] 2025-10-16 03:53:40,805 | INFO     | transferring file log.46771637._001768.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6846769962/log.46771637._001768.job.log.tgz.1 to /var/lib/boinc
[2025-10-16 05:54:45] 2025-10-16 03:53:40,805 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6846769962/log.46771637._001768.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.467716
[2025-10-16 05:54:45] 2025-10-16 03:53:40,814 | INFO     | adding to output.list: log.46771637._001768.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/79/log.46771637._001768.job.log.tg
[2025-10-16 05:54:45] 2025-10-16 03:53:40,815 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-16 05:54:45] 2025-10-16 03:53:40,815 | INFO     | summary of transferred files:
[2025-10-16 05:54:45] 2025-10-16 03:53:40,815 | INFO     |  -- lfn=log.46771637._001768.job.log.tgz.1, status_code=0, status=transferred
[2025-10-16 05:54:45] 2025-10-16 03:53:40,815 | INFO     | stage-out finished correctly
[2025-10-16 05:54:45] 2025-10-16 03:53:42,454 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-16 05:54:45] 2025-10-16 03:53:42,577 | INFO     | job 6846769962 has state=finished
[2025-10-16 05:54:45] 2025-10-16 03:53:42,577 | INFO     | preparing for final server update for job 6846769962 in state='finished'
[2025-10-16 05:54:45] 2025-10-16 03:53:42,578 | INFO     | this job has now completed (state=finished)
[2025-10-16 05:54:45] 2025-10-16 03:53:42,578 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-16 05:54:45] 2025-10-16 03:53:42,578 | INFO     | log transfer has been attempted: DONE
[2025-10-16 05:54:45] 2025-10-16 03:53:42,578 | INFO     | job 6846769962 has finished - writing final server update
[2025-10-16 05:54:45] 2025-10-16 03:53:42,578 | INFO     | total number of processed events: 400 (read)
[2025-10-16 05:54:45] 2025-10-16 03:53:42,614 | INFO     | executing command: lscpu
[2025-10-16 05:54:45] 2025-10-16 03:53:42,686 | INFO     | time since job start (4388s) is within the limit (172800.0s)
[2025-10-16 05:54:45] 2025-10-16 03:53:42,701 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-16 05:54:45] 2025-10-16 03:53:44,687 | INFO     | time since job start (4390s) is within the limit (172800.0s)
[2025-10-16 05:54:45] 2025-10-16 03:53:45,041 | WARNING  | process 324608 can no longer be monitored (due to stat problems) - aborting
[2025-10-16 05:54:45] 2025-10-16 03:53:45,042 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6846769962/memory_monitor_summary.json (trf name=prmon)
[2025-10-16 05:54:45] 2025-10-16 03:53:45,118 | INFO     | number of running child processes to parent process 324608: 1
[2025-10-16 05:54:45] 2025-10-16 03:53:45,118 | INFO     | maximum number of monitored processes: 6
[2025-10-16 05:54:45] 2025-10-16 03:53:45,672 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-16 05:54:45] 2025-10-16 03:53:45,674 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3968.604416666667
[2025-10-16 05:54:45] 2025-10-16 03:53:45,677 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6846769962/memory_monitor_summary.json (trf name=prmon)
[2025-10-16 05:54:45] 2025-10-16 03:53:45,677 | INFO     | extracted standard info from prmon json
[2025-10-16 05:54:45] 2025-10-16 03:53:45,677 | INFO     | extracted standard memory fields from prmon json
[2025-10-16 05:54:45] 2025-10-16 03:53:45,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-16 05:54:45] 2025-10-16 03:53:45,677 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-16 05:54:45] 2025-10-16 03:53:45,678 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-16 05:54:45] 2025-10-16 03:53:45,679 | INFO     | fitting pss+swap vs Time
[2025-10-16 05:54:45] 2025-10-16 03:53:45,679 | INFO     | sum of square deviations: 85136480.0
[2025-10-16 05:54:45] 2025-10-16 03:53:45,679 | INFO     | sum of deviations: -1343486447.9999998
[2025-10-16 05:54:45] 2025-10-16 03:53:45,679 | INFO     | mean x: 1760584709.0
[2025-10-16 05:54:45] 2025-10-16 03:53:45,679 | INFO     | mean y: 2454601.2
[2025-10-16 05:54:45] 2025-10-16 03:53:45,679 | INFO     | -- intersect: 27785159466.347385
[2025-10-16 05:54:45] 2025-10-16 03:53:45,679 | INFO     | intersect: 27785159466.347385
[2025-10-16 05:54:45] 2025-10-16 03:53:45,679 | INFO     | chi2: 0.10270041077732044
[2025-10-16 05:54:45] 2025-10-16 03:53:45,679 | INFO     | -- intersect: 27785159466.347385
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | current memory leak: -15.78 B/s (using 65 data points, chi2=0.10)
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | could have reported an average CPU frequency of 3952 MHz (6 samples)
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | ..............................
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | . Timing measurements:
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | . get job = 0 s
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | . initial setup = 18 s
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | . payload setup = 2 s
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | . stage-in = 0 s
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | . payload execution = 4365 s
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | . stage-out = 0 s
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | . log creation = 0 s
[2025-10-16 05:54:45] 2025-10-16 03:53:45,680 | INFO     | ..............................
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | 
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | job summary report
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | --------------------------------------------------
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | PanDA job id: 6846769962
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | task id: 46771637
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | errors: (none)
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | pilot state: finished 
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | transexitcode: 0
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | exeerrorcode: 0
[2025-10-16 05:54:45] 2025-10-16 03:53:45,744 | INFO     | exeerrordiag: 
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | exitcode: 0
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | exitmsg: OK
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | cpuconsumptiontime: 23567 s
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | nevents: 400
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | neventsw: 0
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | pid: 324608
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | pgrp: 324608
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | corecount: 6
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | event service: False
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | sizes: {0: 2348756, 1: 2348955, 3: 2349217, 11: 2349245, 4372: 2375502, 4374: 2384514, 4376: 2384698, 4379: 2384892}
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | --------------------------------------------------
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | 
[2025-10-16 05:54:45] 2025-10-16 03:53:45,745 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-10-16 05:54:45] 2025-10-16 03:53:45,754 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,755 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,756 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,756 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,756 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,756 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,756 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-16 05:54:45] 2025-10-16 03:53:45,756 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,756 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-16 05:54:45] 2025-10-16 03:53:45,756 | INFO     | job 6846769962 has completed (purged errors)
[2025-10-16 05:54:45] 2025-10-16 03:53:45,756 | INFO     | overall cleanup function is called
[2025-10-16 05:54:45] 2025-10-16 03:53:46,762 | INFO     | --- collectZombieJob: --- 10, [324608]
[2025-10-16 05:54:45] 2025-10-16 03:53:46,762 | INFO     | zombie collector waiting for pid 324608
[2025-10-16 05:54:45] 2025-10-16 03:53:46,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-16 05:54:45] 2025-10-16 03:53:46,763 | INFO     | collected zombie processes
[2025-10-16 05:54:45] 2025-10-16 03:53:46,763 | INFO     | will attempt to kill all subprocesses of pid=324608
[2025-10-16 05:54:45] 2025-10-16 03:53:46,842 | INFO     | process IDs to be killed: [324608] (in reverse order)
[2025-10-16 05:54:45] 2025-10-16 03:53:46,866 | WARNING  | found no corresponding commands to process id(s)
[2025-10-16 05:54:45] 2025-10-16 03:53:46,866 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-16 05:54:45] 2025-10-16 03:53:46,869 | INFO     | did not find any defunct processes belonging to 324608
[2025-10-16 05:54:45] 2025-10-16 03:53:46,870 | INFO     | did not find any defunct processes belonging to 324608
[2025-10-16 05:54:45] 2025-10-16 03:53:46,871 | INFO     | ready for new job
[2025-10-16 05:54:45] 2025-10-16 03:53:46,871 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-16 05:54:45] 2025-10-16 03:53:46,871 | INFO     | ***************************************
[2025-10-16 05:54:45] 2025-10-16 03:53:46,871 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-16 05:54:45] 2025-10-16 03:53:46,871 | INFO     | ***************************************
[2025-10-16 05:54:45] 2025-10-16 03:53:46,871 | INFO     | 
[2025-10-16 05:54:45] 2025-10-16 03:53:46,872 | INFO     | architecture information:
[2025-10-16 05:54:45] 2025-10-16 03:53:46,872 | INFO     | executing command: cat /etc/os-release
[2025-10-16 05:54:45] 2025-10-16 03:53:46,879 | INFO     | cat /etc/os-release:
[2025-10-16 05:54:45] NAME="CentOS Linux"
[2025-10-16 05:54:45] VERSION="7 (Core)"
[2025-10-16 05:54:45] ID="centos"
[2025-10-16 05:54:45] ID_LIKE="rhel fedora"
[2025-10-16 05:54:45] VERSION_ID="7"
[2025-10-16 05:54:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-16 05:54:45] ANSI_COLOR="0;31"
[2025-10-16 05:54:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-16 05:54:45] HOME_URL="https://www.centos.org/"
[2025-10-16 05:54:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-16 05:54:45] 
[2025-10-16 05:54:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-16 05:54:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-16 05:54:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-16 05:54:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-16 05:54:45] 
[2025-10-16 05:54:45] 2025-10-16 03:53:46,879 | INFO     | ***************************************
[2025-10-16 05:54:45] 2025-10-16 03:53:47,382 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-10-16 05:54:45] 2025-10-16 03:53:47,390 | INFO     | sufficient remaining disk space (16971202560 B)
[2025-10-16 05:54:45] 2025-10-16 03:53:47,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-16 05:54:45] 2025-10-16 03:53:47,390 | INFO     | current server update state: UPDATING_FINAL
[2025-10-16 05:54:45] 2025-10-16 03:53:47,390 | INFO     | update_server=False
[2025-10-16 05:54:45] 2025-10-16 03:53:47,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-16 05:54:45] 2025-10-16 03:53:47,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-16 05:54:45] 2025-10-16 03:53:47,554 | INFO     | all data control threads have been joined
[2025-10-16 05:54:45] 2025-10-16 03:53:47,621 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-16 05:54:45] 2025-10-16 03:53:47,621 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-16 05:54:45] 2025-10-16 03:53:47,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-16 05:54:45] 2025-10-16 03:53:47,622 | INFO     | will abort loop
[2025-10-16 05:54:45] 2025-10-16 03:53:47,707 | INFO     | all job control threads have been joined
[2025-10-16 05:54:45] 2025-10-16 03:53:48,357 | INFO     | all payload control threads have been joined
[2025-10-16 05:54:45] 2025-10-16 03:53:48,396 | INFO     | [job] retrieve thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:48,396 | INFO     | [job] queue monitor thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:48,560 | INFO     | [data] control thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:48,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-16 05:54:45] 2025-10-16 03:53:48,627 | INFO     | [job] job monitor thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:48,712 | INFO     | [job] control thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:48,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-16 05:54:45] 2025-10-16 03:53:49,018 | INFO     | [data] copytool_in thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:49,033 | INFO     | [payload] failed_post thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:49,090 | INFO     | [payload] execute_payloads thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:49,363 | INFO     | [payload] control thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:49,592 | INFO     | [job] validate thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:49,610 | INFO     | [job] create_data_payload thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:49,746 | INFO     | [payload] validate_post thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:49,754 | INFO     | [payload] validate_pre thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:49,784 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:50,890 | INFO     | [data] copytool_out thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:53:52,588 | INFO     | [data] queue_monitor thread has finished
[2025-10-16 05:54:45] 2025-10-16 03:54:17,904 | INFO     | PID=316765 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-16 05:54:45] 2025-10-16 03:54:17,904 | INFO     | .. there are 3 such processes running
[2025-10-16 05:54:45] 2025-10-16 03:54:17,904 | INFO     | found 0 job(s) in 20 queues
[2025-10-16 05:54:45] 2025-10-16 03:54:17,904 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-16 05:54:45] 2025-10-16 03:54:17,904 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-16 05:54:45] 2025-10-16 03:54:40,106 | INFO     | [monitor] cgroup control has ended
[2025-10-16 05:54:45] 2025-10-16 03:54:40,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140207138404160)>', '<ExcThread(monitor, started 140206749492992)>']
[2025-10-16 05:54:45] 2025-10-16 03:54:41,013 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-16 05:54:45] 2025-10-16 03:54:41,013 | INFO     | [monitor] control thread has ended
[2025-10-16 05:54:45] 2025-10-16 03:54:45,546 | INFO     | all workflow threads have been joined
[2025-10-16 05:54:45] 2025-10-16 03:54:45,546 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-16 05:54:45] 2025-10-16 03:54:45,546 | INFO     | traces error code: 0
[2025-10-16 05:54:45] 2025-10-16 03:54:45,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-16 05:54:45] 2025-10-16 03:54:45,605 [wrapper] ==== pilot stdout END ====
[2025-10-16 05:54:45] 2025-10-16 03:54:45,607 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-16 05:54:45] 2025-10-16 03:54:45,608 [wrapper] pilotpid: 316765
[2025-10-16 05:54:45] 2025-10-16 03:54:45,609 [wrapper] Pilot exit status: 0
[2025-10-16 05:54:45] 2025-10-16 03:54:45,614 [wrapper] pandaids: 6846769962
[2025-10-16 05:54:45] 2025-10-16 03:54:45,630 [wrapper] cleanup supervisor_pilot  363610 316766
[2025-10-16 05:54:45] 2025-10-16 03:54:45,632 [wrapper] Test setup, not cleaning
[2025-10-16 05:54:45] 2025-10-16 03:54:45,633 [wrapper] apfmon messages muted
[2025-10-16 05:54:45] 2025-10-16 03:54:45,634 [wrapper] ==== wrapper stdout END ====
[2025-10-16 05:54:45] 2025-10-16 03:54:45,636 [wrapper] ==== wrapper stderr END ====
[2025-10-16 05:54:45]  *** Error codes and diagnostics ***
[2025-10-16 05:54:45]     "exeErrorCode": 0,
[2025-10-16 05:54:45]     "exeErrorDiag": "",
[2025-10-16 05:54:45]     "pilotErrorCode": 0,
[2025-10-16 05:54:45]     "pilotErrorDiag": "",
[2025-10-16 05:54:45]  *** Listing of results directory ***
[2025-10-16 05:54:45] total 422415
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc    557409 Oct 16 01:33 pilot3.tar.gz
[2025-10-16 05:54:45] -rwx------ 1 boinc boinc     36292 Oct 16 01:43 runpilot2-wrapper.sh
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc      5112 Oct 16 01:44 queuedata.json
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc       100 Oct 16 04:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-16 05:54:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 16 04:40 run_atlas
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc       105 Oct 16 04:40 job.xml
[2025-10-16 05:54:45] -rw-r--r-- 2 boinc boinc     15120 Oct 16 04:40 start_atlas.sh
[2025-10-16 05:54:45] drwxrwx--x 2 boinc boinc         5 Oct 16 04:40 shared
[2025-10-16 05:54:45] -rw-r--r-- 2 boinc boinc    569673 Oct 16 04:40 input.tar.gz
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc      6795 Oct 16 04:40 init_data.xml
[2025-10-16 05:54:45] -rw-r--r-- 2 boinc boinc 228779791 Oct 16 04:40 EVNT.46771634._000172.pool.root.1
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc         0 Oct 16 04:40 boinc_lockfile
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc      2553 Oct 16 04:40 pandaJob.out
[2025-10-16 05:54:45] -rw------- 1 boinc boinc    974318 Oct 16 04:40 agis_schedconf.cvmfs.json
[2025-10-16 05:54:45] -rw------- 1 boinc boinc   1560740 Oct 16 04:40 agis_ddmendpoints.agis.ALL.json
[2025-10-16 05:54:45] drwx------ 5 boinc boinc        22 Oct 16 04:40 pilot3
[2025-10-16 05:54:45] -rw------- 1 boinc boinc 201835978 Oct 16 05:53 HITS.46771637._001768.pool.root.1
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc       529 Oct 16 05:53 boinc_task_state.xml
[2025-10-16 05:54:45] -rw------- 1 boinc boinc      1037 Oct 16 05:53 memory_monitor_summary.json
[2025-10-16 05:54:45] -rw------- 1 boinc boinc    300396 Oct 16 05:53 log.46771637._001768.job.log.tgz.1
[2025-10-16 05:54:45] -rw------- 1 boinc boinc      7761 Oct 16 05:53 heartbeat.json
[2025-10-16 05:54:45] -rw------- 1 boinc boinc        95 Oct 16 05:53 pilot_heartbeat.json
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc      8192 Oct 16 05:54 boinc_mmap_file
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc        27 Oct 16 05:54 wrapper_checkpoint.txt
[2025-10-16 05:54:45] -rw------- 1 boinc boinc      5015 Oct 16 05:54 pilotlog.txt
[2025-10-16 05:54:45] -rw------- 1 boinc boinc    664824 Oct 16 05:54 log.46771637._001768.job.log.1
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc       620 Oct 16 05:54 runtime_log
[2025-10-16 05:54:45] -rw------- 1 boinc boinc    983040 Oct 16 05:54 result.tar.gz
[2025-10-16 05:54:45] -rw------- 1 boinc boinc       357 Oct 16 05:54 output.list
[2025-10-16 05:54:45] -rw------- 1 boinc boinc       657 Oct 16 05:54 X2tLDmTKQT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmplWMDmGOyrVm.diag
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc      8802 Oct 16 05:54 runtime_log.err
[2025-10-16 05:54:45] -rw-r--r-- 1 boinc boinc     21507 Oct 16 05:54 stderr.txt
[2025-10-16 05:54:45] HITS file was successfully produced:
[2025-10-16 05:54:45] -rw------- 1 boinc boinc 201835978 Oct 16 05:53 shared/HITS.pool.root.1
[2025-10-16 05:54:45]  *** Contents of shared directory: ***
[2025-10-16 05:54:45] total 421351
[2025-10-16 05:54:45] -rw-r--r-- 2 boinc boinc     15120 Oct 16 04:40 start_atlas.sh
[2025-10-16 05:54:45] -rw-r--r-- 2 boinc boinc    569673 Oct 16 04:40 input.tar.gz
[2025-10-16 05:54:45] -rw-r--r-- 2 boinc boinc 228779791 Oct 16 04:40 ATLAS.root_0
[2025-10-16 05:54:45] -rw------- 1 boinc boinc 201835978 Oct 16 05:53 HITS.pool.root.1
[2025-10-16 05:54:45] -rw------- 1 boinc boinc    983040 Oct 16 05:54 result.tar.gz
05:54:47 (312963): run_atlas exited; CPU time 23624.006519
05:54:47 (312963): called boinc_finish(0)

</stderr_txt>
]]>

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