Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:26:38 (618380): wrapper (7.7.26015): starting
20:26:38 (618380): wrapper: running run_atlas (--nthreads 12)
[2025-10-15 20:26:38] Arguments: --nthreads 12
[2025-10-15 20:26:38] Threads: 12
[2025-10-15 20:26:38] Checking for CVMFS
[2025-10-15 20:26:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 20:26:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 20:26:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 20:26:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 20:26:39] 2.13.2.0 1918225 2976 219668 151745 0 103 27647778 46080000 44596 130560 0 12737366 99.917 2920478 22080 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-15 20:26:39] CVMFS is ok
[2025-10-15 20:26:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-15 20:26:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-15 20:26:39] Further information can be found at the LHC@home message board.
[2025-10-15 20:26:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 20:26:39] Checking for apptainer binary...
[2025-10-15 20:26:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 20:26:39] Running /usr/bin/apptainer --version
[2025-10-15 20:26:39] apptainer version 1.4.2-1.el9
[2025-10-15 20:26:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 20:26:39] mff2104.farm.particle.cz
[2025-10-15 20:26:39] apptainer works
[2025-10-15 20:26:39] Set ATHENA_PROC_NUMBER=12
[2025-10-15 20:26:39] Set ATHENA_CORE_NUMBER=12
[2025-10-15 20:26:39] Starting ATLAS job with PandaID=6845706342
[2025-10-15 20:26:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 22:33:59]  *** The last 200 lines of the pilot log: ***
[2025-10-15 22:33:59] 2025-10-15 19:31:44,003 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-15 22:33:59] 2025-10-15 19:31:44,003 | INFO     | summary of transferred files:
[2025-10-15 22:33:59] 2025-10-15 19:31:44,003 | INFO     |  -- lfn=log.46776533._004467.job.log.tgz.1, status_code=0, status=transferred
[2025-10-15 22:33:59] 2025-10-15 19:31:44,003 | INFO     | stage-out finished correctly
[2025-10-15 22:33:59] 2025-10-15 19:31:44,089 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-15 22:33:59] 2025-10-15 19:31:44,176 | INFO     | job 6845706342 has state=finished
[2025-10-15 22:33:59] 2025-10-15 19:31:44,177 | INFO     | preparing for final server update for job 6845706342 in state='finished'
[2025-10-15 22:33:59] 2025-10-15 19:31:44,750 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-15 22:33:59] 2025-10-15 19:31:44,751 | INFO     | this job has now completed (state=finished)
[2025-10-15 22:33:59] 2025-10-15 19:31:44,751 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-15 22:33:59] 2025-10-15 19:31:44,751 | INFO     | log transfer has been attempted: DONE
[2025-10-15 22:33:59] 2025-10-15 19:31:44,751 | INFO     | job 6845706342 has finished - writing final server update
[2025-10-15 22:33:59] 2025-10-15 19:31:44,751 | INFO     | total number of processed events: 400 (read)
[2025-10-15 22:33:59] 2025-10-15 19:31:44,752 | INFO     | executing command: lscpu
[2025-10-15 22:33:59] 2025-10-15 19:31:44,828 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-15 22:33:59] 2025-10-15 19:31:45,424 | INFO     | time since job start (3891s) is within the limit (172800.0s)
[2025-10-15 22:33:59] 2025-10-15 19:31:46,914 | WARNING  | process 644478 can no longer be monitored (due to stat problems) - aborting
[2025-10-15 22:33:59] 2025-10-15 19:31:46,914 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6845706342/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 22:33:59] 2025-10-15 19:31:46,915 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6845706342/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 22:33:59] 2025-10-15 19:31:46,915 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-15 22:33:59] 2025-10-15 19:31:46,916 | WARNING  | maxPSS not found in memory monitor output
[2025-10-15 22:33:59] 2025-10-15 19:31:46,916 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4317505 B
[2025-10-15 22:33:59] 2025-10-15 19:31:46,916 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15299 B
[2025-10-15 22:33:59] 2025-10-15 19:31:46,916 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-10-15 22:33:59] 2025-10-15 19:31:47,430 | INFO     | time since job start (3893s) is within the limit (172800.0s)
[2025-10-15 22:33:59] 2025-10-15 19:31:49,436 | INFO     | time since job start (3895s) is within the limit (172800.0s)
[2025-10-15 22:33:59] 2025-10-15 19:31:51,442 | INFO     | time since job start (3897s) is within the limit (172800.0s)
[2025-10-15 22:33:59] 2025-10-15 19:31:51,992 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-15 22:33:59] 2025-10-15 19:31:52,013 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2960.3822499999987
[2025-10-15 22:33:59] 2025-10-15 19:31:52,022 | INFO     | sufficient remaining disk space (1675944263680 B)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,022 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,024 | INFO     | size of work directory /scratch/.boinc/slots/1/PanDA_Pilot-6845706342: 4628818 B (within 2537553920 B limit)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,025 | INFO     | pfn file=/scratch/.boinc/slots/1/PanDA_Pilot-6845706342/HITS.46776533._004467.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,025 | INFO     | total size of present files: 0 B (workdir size: 4628818 B)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,025 | INFO     | output file size check: skipping output file /scratch/.boinc/slots/1/PanDA_Pilot-6845706342/HITS.46776533._004467.pool.root.1 since it does not exist
[2025-10-15 22:33:59] 2025-10-15 19:31:52,033 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6845706342/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,034 | INFO     | extracted standard info from prmon json
[2025-10-15 22:33:59] 2025-10-15 19:31:52,034 | INFO     | extracted standard memory fields from prmon json
[2025-10-15 22:33:59] 2025-10-15 19:31:52,034 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-15 22:33:59] 2025-10-15 19:31:52,034 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-15 22:33:59] 2025-10-15 19:31:52,034 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-15 22:33:59] 2025-10-15 19:31:52,036 | INFO     | fitting pss+swap vs Time
[2025-10-15 22:33:59] 2025-10-15 19:31:52,036 | INFO     | sum of square deviations: 57407588.0
[2025-10-15 22:33:59] 2025-10-15 19:31:52,036 | INFO     | sum of deviations: -1651035638.0
[2025-10-15 22:33:59] 2025-10-15 19:31:52,037 | INFO     | mean x: 1760554862.0
[2025-10-15 22:33:59] 2025-10-15 19:31:52,037 | INFO     | mean y: 2793330.947368421
[2025-10-15 22:33:59] 2025-10-15 19:31:52,037 | INFO     | -- intersect: 50636148974.04061
[2025-10-15 22:33:59] 2025-10-15 19:31:52,037 | INFO     | intersect: 50636148974.04061
[2025-10-15 22:33:59] 2025-10-15 19:31:52,037 | INFO     | chi2: 0.015732246729368696
[2025-10-15 22:33:59] 2025-10-15 19:31:52,037 | INFO     | -- intersect: 50636148974.04061
[2025-10-15 22:33:59] 2025-10-15 19:31:52,037 | INFO     | current memory leak: -28.76 B/s (using 57 data points, chi2=0.02)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,041 | INFO     | could have reported an average CPU frequency of 2932 MHz (6 samples)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,042 | INFO     | ..............................
[2025-10-15 22:33:59] 2025-10-15 19:31:52,042 | INFO     | . Timing measurements:
[2025-10-15 22:33:59] 2025-10-15 19:31:52,042 | INFO     | . get job = 0 s
[2025-10-15 22:33:59] 2025-10-15 19:31:52,042 | INFO     | . initial setup = 1 s
[2025-10-15 22:33:59] 2025-10-15 19:31:52,042 | INFO     | . payload setup = 9 s
[2025-10-15 22:33:59] 2025-10-15 19:31:52,042 | INFO     | . stage-in = 0 s
[2025-10-15 22:33:59] 2025-10-15 19:31:52,043 | INFO     | . payload execution = 3857 s
[2025-10-15 22:33:59] 2025-10-15 19:31:52,043 | INFO     | . stage-out = 0 s
[2025-10-15 22:33:59] 2025-10-15 19:31:52,043 | INFO     | . log creation = 0 s
[2025-10-15 22:33:59] 2025-10-15 19:31:52,043 | INFO     | ..............................
[2025-10-15 22:33:59] 2025-10-15 19:31:52,137 | INFO     | 
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | job summary report
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | --------------------------------------------------
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | PanDA job id: 6845706342
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | task id: 46776533
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | errors: (none)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | pilot state: finished 
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | transexitcode: 0
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | exeerrorcode: 0
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | exeerrordiag: 
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | exitcode: 0
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | exitmsg: OK
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | cpuconsumptiontime: 40521 s
[2025-10-15 22:33:59] 2025-10-15 19:31:52,138 | INFO     | nevents: 400
[2025-10-15 22:33:59] 2025-10-15 19:31:52,139 | INFO     | neventsw: 0
[2025-10-15 22:33:59] 2025-10-15 19:31:52,139 | INFO     | pid: 644478
[2025-10-15 22:33:59] 2025-10-15 19:31:52,139 | INFO     | pgrp: 644478
[2025-10-15 22:33:59] 2025-10-15 19:31:52,139 | INFO     | corecount: 12
[2025-10-15 22:33:59] 2025-10-15 19:31:52,139 | INFO     | event service: False
[2025-10-15 22:33:59] 2025-10-15 19:31:52,139 | INFO     | sizes: {0: 2348757, 1: 2348956, 8: 2349218, 11: 2349246, 3871: 2375091, 3872: 2384275, 3880: 2384441}
[2025-10-15 22:33:59] 2025-10-15 19:31:52,139 | INFO     | --------------------------------------------------
[2025-10-15 22:33:59] 2025-10-15 19:31:52,139 | INFO     | 
[2025-10-15 22:33:59] 2025-10-15 19:31:52,139 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-10-15 22:33:59] 2025-10-15 19:31:52,169 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,169 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,169 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,169 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,169 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,170 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,170 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,170 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,171 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,171 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-15 22:33:59] 2025-10-15 19:31:52,172 | INFO     | job 6845706342 has completed (purged errors)
[2025-10-15 22:33:59] 2025-10-15 19:31:52,172 | INFO     | overall cleanup function is called
[2025-10-15 22:33:59] 2025-10-15 19:31:52,728 | INFO     | number of running child processes to parent process 644478: 1
[2025-10-15 22:33:59] 2025-10-15 19:31:52,729 | INFO     | maximum number of monitored processes: 6
[2025-10-15 22:33:59] 2025-10-15 19:31:52,729 | INFO     | aborting job monitoring since job object (job id=6845706342) has expired
[2025-10-15 22:33:59] 2025-10-15 19:31:53,181 | INFO     | --- collectZombieJob: --- 10, [644478]
[2025-10-15 22:33:59] 2025-10-15 19:31:53,185 | INFO     | zombie collector waiting for pid 644478
[2025-10-15 22:33:59] 2025-10-15 19:31:53,185 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-15 22:33:59] 2025-10-15 19:31:53,185 | INFO     | collected zombie processes
[2025-10-15 22:33:59] 2025-10-15 19:31:53,185 | INFO     | will attempt to kill all subprocesses of pid=644478
[2025-10-15 22:33:59] 2025-10-15 19:31:53,756 | INFO     | process IDs to be killed: [644478] (in reverse order)
[2025-10-15 22:33:59] 2025-10-15 19:31:53,963 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 22:33:59] 2025-10-15 19:31:53,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 22:33:59] 2025-10-15 19:31:53,991 | INFO     | did not find any defunct processes belonging to 644478
[2025-10-15 22:33:59] 2025-10-15 19:31:54,019 | INFO     | did not find any defunct processes belonging to 644478
[2025-10-15 22:33:59] 2025-10-15 19:31:54,020 | INFO     | ready for new job
[2025-10-15 22:33:59] 2025-10-15 19:31:54,020 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 22:33:59] 2025-10-15 19:31:54,021 | INFO     | ***************************************
[2025-10-15 22:33:59] 2025-10-15 19:31:54,022 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-15 22:33:59] 2025-10-15 19:31:54,022 | INFO     | ***************************************
[2025-10-15 22:33:59] 2025-10-15 19:31:54,022 | INFO     | 
[2025-10-15 22:33:59] 2025-10-15 19:31:54,028 | INFO     | architecture information:
[2025-10-15 22:33:59] 2025-10-15 19:31:54,028 | INFO     | executing command: cat /etc/os-release
[2025-10-15 22:33:59] 2025-10-15 19:31:54,052 | INFO     | cat /etc/os-release:
[2025-10-15 22:33:59] NAME="CentOS Linux"
[2025-10-15 22:33:59] VERSION="7 (Core)"
[2025-10-15 22:33:59] ID="centos"
[2025-10-15 22:33:59] ID_LIKE="rhel fedora"
[2025-10-15 22:33:59] VERSION_ID="7"
[2025-10-15 22:33:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 22:33:59] ANSI_COLOR="0;31"
[2025-10-15 22:33:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 22:33:59] HOME_URL="https://www.centos.org/"
[2025-10-15 22:33:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 22:33:59] 
[2025-10-15 22:33:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 22:33:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 22:33:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 22:33:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 22:33:59] 
[2025-10-15 22:33:59] 2025-10-15 19:31:54,055 | INFO     | ***************************************
[2025-10-15 22:33:59] 2025-10-15 19:31:54,557 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-10-15 22:33:59] 2025-10-15 19:31:54,582 | INFO     | sufficient remaining disk space (1675948457984 B)
[2025-10-15 22:33:59] 2025-10-15 19:31:54,583 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 22:33:59] 2025-10-15 19:31:54,583 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 22:33:59] 2025-10-15 19:31:54,583 | INFO     | update_server=False
[2025-10-15 22:33:59] 2025-10-15 19:31:54,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 22:33:59] 2025-10-15 19:31:54,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 22:33:59] 2025-10-15 19:31:54,584 | INFO     | aborting loop
[2025-10-15 22:33:59] 2025-10-15 19:31:54,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 22:33:59] 2025-10-15 19:31:54,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 22:33:59] 2025-10-15 19:31:55,588 | INFO     | [job] retrieve thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:55,589 | INFO     | [job] job monitor thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:55,608 | INFO     | all data control threads have been joined
[2025-10-15 22:33:59] 2025-10-15 19:31:55,634 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:55,667 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:55,704 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:55,710 | INFO     | all job control threads have been joined
[2025-10-15 22:33:59] 2025-10-15 19:31:55,735 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:55,983 | INFO     | [payload] failed_post thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:56,025 | INFO     | all payload control threads have been joined
[2025-10-15 22:33:59] 2025-10-15 19:31:56,580 | INFO     | [payload] validate_post thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:56,605 | INFO     | [data] copytool_in thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:56,611 | INFO     | [job] validate thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:56,613 | INFO     | [data] control thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:56,618 | INFO     | [data] copytool_out thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:56,715 | INFO     | [job] control thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:57,030 | INFO     | [payload] control thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:57,146 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 22:33:59] 2025-10-15 19:31:58,151 | INFO     | [job] queue monitor thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:31:58,692 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 22:33:59] 2025-10-15 19:32:00,173 | INFO     | [monitor] cgroup control has ended
[2025-10-15 22:33:59] 2025-10-15 19:32:01,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139667593480000)>', '<ExcThread(monitor, started 139666808358656)>']
[2025-10-15 22:33:59] 2025-10-15 19:32:06,475 | INFO     | all workflow threads have been joined
[2025-10-15 22:33:59] 2025-10-15 19:32:06,475 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 22:33:59] 2025-10-15 19:32:06,476 | INFO     | traces error code: 0
[2025-10-15 22:33:59] 2025-10-15 19:32:06,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 22:33:59] 2025-10-15 19:32:25,225 | INFO     | PID=625579 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-15 22:33:59] 2025-10-15 19:32:25,226 | INFO     | .. there are 78 such processes running
[2025-10-15 22:33:59] 2025-10-15 19:32:25,226 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 22:33:59] 2025-10-15 19:32:25,226 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 22:33:59] 2025-10-15 19:32:25,227 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 22:33:59] 2025-10-15 19:32:25,227 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 22:33:59] 2025-10-15 19:32:25,227 | INFO     | [monitor] control thread has ended
[2025-10-15 22:33:59] 2025-10-15 19:32:25,471 [wrapper] ==== pilot stdout END ====
[2025-10-15 22:33:59] 2025-10-15 19:32:25,475 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 22:33:59] 2025-10-15 19:32:25,479 [wrapper] pilotpid: 625579
[2025-10-15 22:33:59] 2025-10-15 19:32:25,484 [wrapper] Pilot exit status: 0
[2025-10-15 22:33:59] 2025-10-15 19:32:25,499 [wrapper] pandaids: 6845706342
[2025-10-15 22:33:59] 2025-10-15 19:32:25,628 [wrapper] cleanup supervisor_pilot  885784 625580
[2025-10-15 22:33:59] 2025-10-15 19:32:25,633 [wrapper] Test setup, not cleaning
[2025-10-15 22:33:59] 2025-10-15 19:32:25,637 [wrapper] apfmon messages muted
[2025-10-15 22:33:59] 2025-10-15 19:32:25,643 [wrapper] ==== wrapper stdout END ====
[2025-10-15 22:33:59] 2025-10-15 19:32:25,647 [wrapper] ==== wrapper stderr END ====
[2025-10-15 22:33:59]  *** Error codes and diagnostics ***
[2025-10-15 22:33:59]     "exeErrorCode": 0,
[2025-10-15 22:33:59]     "exeErrorDiag": "",
[2025-10-15 22:33:59]     "pilotErrorCode": 0,
[2025-10-15 22:33:59]     "pilotErrorDiag": "",
[2025-10-15 22:33:59]  *** Listing of results directory ***
[2025-10-15 22:33:59] total 425996
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc    557409 Oct 15 11:36 pilot3.tar.gz
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc      5112 Oct 15 11:54 queuedata.json
[2025-10-15 22:33:59] -rwx------ 1 boinc boinc     36292 Oct 15 11:55 runpilot2-wrapper.sh
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc       100 Oct 15 20:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 22:33:59] -rwxr-xr-x 1 boinc boinc      7986 Oct 15 20:26 run_atlas
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc       105 Oct 15 20:26 job.xml
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc      6665 Oct 15 20:26 init_data.xml
[2025-10-15 22:33:59] -rw-r--r-- 2 boinc boinc 228125574 Oct 15 20:26 EVNT.46776529._000233.pool.root.1
[2025-10-15 22:33:59] -rw-r--r-- 2 boinc boinc     15120 Oct 15 20:26 start_atlas.sh
[2025-10-15 22:33:59] drwxrwx--x 2 boinc boinc      4096 Oct 15 20:26 shared
[2025-10-15 22:33:59] -rw-r--r-- 2 boinc boinc    569678 Oct 15 20:26 input.tar.gz
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc         0 Oct 15 20:26 boinc_lockfile
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc      2559 Oct 15 20:26 pandaJob.out
[2025-10-15 22:33:59] -rw------- 1 boinc boinc    974310 Oct 15 20:26 agis_schedconf.cvmfs.json
[2025-10-15 22:33:59] -rw------- 1 boinc boinc   1560740 Oct 15 20:26 agis_ddmendpoints.agis.ALL.json
[2025-10-15 22:33:59] drwx------ 5 boinc boinc      4096 Oct 15 20:26 pilot3
[2025-10-15 22:33:59] -rw------- 1 boinc boinc 202313421 Oct 15 21:31 HITS.46776533._004467.pool.root.1
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc       528 Oct 15 21:31 boinc_task_state.xml
[2025-10-15 22:33:59] -rw------- 1 boinc boinc      1023 Oct 15 21:31 memory_monitor_summary.json
[2025-10-15 22:33:59] -rw------- 1 boinc boinc    377085 Oct 15 21:31 log.46776533._004467.job.log.tgz.1
[2025-10-15 22:33:59] -rw------- 1 boinc boinc      7781 Oct 15 21:31 heartbeat.json
[2025-10-15 22:33:59] -rw------- 1 boinc boinc       822 Oct 15 21:32 pilotlog.txt
[2025-10-15 22:33:59] -rw------- 1 boinc boinc        95 Oct 15 21:32 pilot_heartbeat.json
[2025-10-15 22:33:59] -rw------- 1 boinc boinc    563193 Oct 15 21:32 log.46776533._004467.job.log.1
[2025-10-15 22:33:59] -rw------- 1 boinc boinc       357 Oct 15 21:32 output.list
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc       620 Oct 15 21:32 runtime_log
[2025-10-15 22:33:59] -rw------- 1 boinc boinc    962560 Oct 15 21:32 result.tar.gz
[2025-10-15 22:33:59] -rw------- 1 boinc boinc       664 Oct 15 21:32 WaJNDmYPDT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrXnNDmMDxrKn.diag
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc      8764 Oct 15 21:32 runtime_log.err
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc        26 Oct 15 22:33 wrapper_checkpoint.txt
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc      8192 Oct 15 22:33 boinc_mmap_file
[2025-10-15 22:33:59] -rw-r--r-- 1 boinc boinc     22443 Oct 15 22:33 stderr.txt
[2025-10-15 22:33:59] HITS file was successfully produced:
[2025-10-15 22:33:59] -rw------- 1 boinc boinc 202313421 Oct 15 21:31 shared/HITS.pool.root.1
[2025-10-15 22:33:59]  *** Contents of shared directory: ***
[2025-10-15 22:33:59] total 421876
[2025-10-15 22:33:59] -rw-r--r-- 2 boinc boinc 228125574 Oct 15 20:26 ATLAS.root_0
[2025-10-15 22:33:59] -rw-r--r-- 2 boinc boinc     15120 Oct 15 20:26 start_atlas.sh
[2025-10-15 22:33:59] -rw-r--r-- 2 boinc boinc    569678 Oct 15 20:26 input.tar.gz
[2025-10-15 22:33:59] -rw------- 1 boinc boinc 202313421 Oct 15 21:31 HITS.pool.root.1
[2025-10-15 22:33:59] -rw------- 1 boinc boinc    962560 Oct 15 21:32 result.tar.gz
22:34:00 (618380): run_atlas exited; CPU time 40703.815039
22:34:00 (618380): called boinc_finish(0)

</stderr_txt>
]]>

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