Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:55:09 (3698238): wrapper (7.7.26015): starting
16:55:09 (3698238): wrapper: running run_atlas (--nthreads 3)
[2025-10-15 16:55:09] Arguments: --nthreads 3
[2025-10-15 16:55:09] Threads: 3
[2025-10-15 16:55:09] Checking for CVMFS
[2025-10-15 16:55:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 16:55:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 16:55:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 16:55:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 16:55:09] 2.9.2.0 3673021 81 51320 151737 2 57 29648788 36864001 0 130560 0 65631 99.971 5419 1185 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-15 16:55:09] CVMFS is ok
[2025-10-15 16:55:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-15 16:55:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-15 16:55:09] Further information can be found at the LHC@home message board.
[2025-10-15 16:55:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 16:55:09] Checking for apptainer binary...
[2025-10-15 16:55:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 16:55:09] Running /usr/bin/apptainer --version
[2025-10-15 16:55:09] apptainer version 1.4.1-1.1
[2025-10-15 16:55:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 16:55:09] thA305b
[2025-10-15 16:55:09] apptainer works
[2025-10-15 16:55:09] Set ATHENA_PROC_NUMBER=3
[2025-10-15 16:55:09] Set ATHENA_CORE_NUMBER=3
[2025-10-15 16:55:09] Starting ATLAS job with PandaID=6832427756
[2025-10-15 16:55:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 18:09:28]  *** The last 200 lines of the pilot log: ***
[2025-10-15 18:09:28] 2025-10-15 16:08:27,768 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-15 18:09:28] 2025-10-15 16:08:27,768 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-15 18:09:28] 2025-10-15 16:08:27,768 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 18:09:28] 2025-10-15 16:08:27,768 | INFO     | will abort loop
[2025-10-15 18:09:28] 2025-10-15 16:08:27,823 | INFO     | all payload control threads have been joined
[2025-10-15 18:09:28] 2025-10-15 16:08:27,887 | INFO     | all data control threads have been joined
[2025-10-15 18:09:28] 2025-10-15 16:08:28,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 18:09:28] 2025-10-15 16:08:28,341 | INFO     | [job] retrieve thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:28,341 | INFO     | [job] queue monitor thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:28,774 | INFO     | [job] job monitor thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:28,829 | INFO     | [payload] control thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:28,853 | INFO     | [payload] validate_post thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:28,893 | INFO     | [data] control thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:28,956 | INFO     | [data] copytool_in thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:28,976 | INFO     | all job control threads have been joined
[2025-10-15 18:09:28] 2025-10-15 16:08:29,079 | INFO     | [payload] failed_post thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:29,216 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:29,217 | INFO     | [job] validate thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:29,313 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:29,826 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:29,981 | INFO     | [job] control thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:30,149 | INFO     | [data] copytool_out thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:30,668 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 18:09:28] 2025-10-15 16:08:34,675 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:37,937 | INFO     | job.realtimelogging is not enabled
[2025-10-15 18:09:28] 2025-10-15 16:08:38,943 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 18:09:28] 2025-10-15 16:08:57,470 | INFO     | PID=3701965 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-15 18:09:28] 2025-10-15 16:08:57,470 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 18:09:28] 2025-10-15 16:08:57,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 18:09:28] 2025-10-15 16:08:57,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 18:09:28] 2025-10-15 16:09:21,188 | INFO     | [monitor] cgroup control has ended
[2025-10-15 18:09:28] 2025-10-15 16:09:22,979 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140507444188992)>', '<ExcThread(monitor, started 140506810009344)>']
[2025-10-15 18:09:28] 2025-10-15 16:09:23,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 18:09:28] 2025-10-15 16:09:23,609 | INFO     | [monitor] control thread has ended
[2025-10-15 18:09:28] 2025-10-15 16:09:27,991 | INFO     | all workflow threads have been joined
[2025-10-15 18:09:28] 2025-10-15 16:09:27,991 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 18:09:28] 2025-10-15 16:09:27,991 | INFO     | traces error code: 0
[2025-10-15 18:09:28] 2025-10-15 16:09:27,991 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 18:09:28] 2025-10-15 16:09:28,044 [wrapper] ==== pilot stdout END ====
[2025-10-15 18:09:28] 2025-10-15 16:09:28,047 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 18:09:28] 2025-10-15 16:09:28,049 [wrapper] pilotpid: 3701965
[2025-10-15 18:09:28] 2025-10-15 16:09:28,051 [wrapper] Pilot exit status: 0
[2025-10-15 18:09:28] 2025-10-15 16:09:28,059 [wrapper] pandaids: 6832427756
[2025-10-15 18:09:28] 2025-10-15 16:09:28,079 [wrapper] cleanup supervisor_pilot 3717947 3701966
[2025-10-15 18:09:28] 2025-10-15 16:09:28,081 [wrapper] Test setup, not cleaning
[2025-10-15 18:09:28] 2025-10-15 16:09:28,084 [wrapper] apfmon messages muted
[2025-10-15 18:09:28] 2025-10-15 16:09:28,086 [wrapper] ==== wrapper stdout END ====
[2025-10-15 18:09:28] 2025-10-15 16:09:28,089 [wrapper] ==== wrapper stderr END ====
[2025-10-15 18:09:28]  *** Error codes and diagnostics ***
[2025-10-15 18:09:28]     "exeErrorCode": 0,
[2025-10-15 18:09:28]     "exeErrorDiag": "",
[2025-10-15 18:09:28]     "pilotErrorCode": 0,
[2025-10-15 18:09:28]     "pilotErrorDiag": "",
[2025-10-15 18:09:28]  *** Listing of results directory ***
[2025-10-15 18:09:28] total 391316
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc    557409 Oct 15 14:51 pilot3.tar.gz
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc      5112 Oct 15 15:11 queuedata.json
[2025-10-15 18:09:28] -rwx------ 1 boinc boinc     36292 Oct 15 15:12 runpilot2-wrapper.sh
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc       100 Oct 15 16:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 18:09:28] -rwxr-xr-x 1 boinc boinc      7986 Oct 15 16:55 run_atlas
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc       105 Oct 15 16:55 job.xml
[2025-10-15 18:09:28] -rw-r--r-- 2 boinc boinc 217630114 Oct 15 16:55 EVNT.46376901._004001.pool.root.1
[2025-10-15 18:09:28] -rw-r--r-- 2 boinc boinc    569673 Oct 15 16:55 input.tar.gz
[2025-10-15 18:09:28] -rw-r--r-- 2 boinc boinc     15120 Oct 15 16:55 start_atlas.sh
[2025-10-15 18:09:28] drwxrwx--x 2 boinc boinc      4096 Oct 15 16:55 shared
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc         0 Oct 15 16:55 boinc_setup_complete
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc      6447 Oct 15 16:55 init_data.xml
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc         0 Oct 15 16:55 boinc_lockfile
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc      2519 Oct 15 16:55 pandaJob.out
[2025-10-15 18:09:28] -rw------- 1 boinc boinc    973863 Oct 15 16:55 agis_schedconf.cvmfs.json
[2025-10-15 18:09:28] -rw------- 1 boinc boinc   1560740 Oct 15 16:55 agis_ddmendpoints.agis.ALL.json
[2025-10-15 18:09:28] drwx------ 5 boinc boinc      4096 Oct 15 16:55 pilot3
[2025-10-15 18:09:28] -rw------- 1 boinc boinc 177403138 Oct 15 18:08 HITS.46376905._107908.pool.root.1
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc       529 Oct 15 18:08 boinc_task_state.xml
[2025-10-15 18:09:28] -rw------- 1 boinc boinc      1014 Oct 15 18:08 memory_monitor_summary.json
[2025-10-15 18:09:28] -rw------- 1 boinc boinc    242953 Oct 15 18:08 log.46376905._107908.job.log.tgz.1
[2025-10-15 18:09:28] -rw------- 1 boinc boinc      7753 Oct 15 18:08 heartbeat.json
[2025-10-15 18:09:28] -rw------- 1 boinc boinc        95 Oct 15 18:08 pilot_heartbeat.json
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc      8192 Oct 15 18:09 boinc_mmap_file
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc        27 Oct 15 18:09 wrapper_checkpoint.txt
[2025-10-15 18:09:28] -rw------- 1 boinc boinc      5010 Oct 15 18:09 pilotlog.txt
[2025-10-15 18:09:28] -rw------- 1 boinc boinc    650552 Oct 15 18:09 log.46376905._107908.job.log.1
[2025-10-15 18:09:28] -rw------- 1 boinc boinc       357 Oct 15 18:09 output.list
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc       620 Oct 15 18:09 runtime_log
[2025-10-15 18:09:28] -rw------- 1 boinc boinc    911360 Oct 15 18:09 result.tar.gz
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc      8782 Oct 15 18:09 runtime_log.err
[2025-10-15 18:09:28] -rw------- 1 boinc boinc       659 Oct 15 18:09 87FKDmLUGT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmqXWMDmxvWx4n.diag
[2025-10-15 18:09:28] -rw-r--r-- 1 boinc boinc      7385 Oct 15 18:09 stderr.txt
[2025-10-15 18:09:28] HITS file was successfully produced:
[2025-10-15 18:09:28] -rw------- 1 boinc boinc 177403138 Oct 15 18:08 shared/HITS.pool.root.1
[2025-10-15 18:09:28]  *** Contents of shared directory: ***
[2025-10-15 18:09:28] total 387256
[2025-10-15 18:09:28] -rw-r--r-- 2 boinc boinc 217630114 Oct 15 16:55 ATLAS.root_0
[2025-10-15 18:09:28] -rw-r--r-- 2 boinc boinc    569673 Oct 15 16:55 input.tar.gz
[2025-10-15 18:09:28] -rw-r--r-- 2 boinc boinc     15120 Oct 15 16:55 start_atlas.sh
[2025-10-15 18:09:28] -rw------- 1 boinc boinc 177403138 Oct 15 18:08 HITS.pool.root.1
[2025-10-15 18:09:28] -rw------- 1 boinc boinc    911360 Oct 15 18:09 result.tar.gz
18:09:29 (3698238): run_atlas exited; CPU time 12466.596701
18:09:29 (3698238): called boinc_finish(0)

</stderr_txt>
]]>

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