Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:24:32 (2693890): wrapper (7.7.26015): starting
13:24:32 (2693890): wrapper: running run_atlas (--nthreads 4)
[2025-10-15 13:24:32] Arguments: --nthreads 4
[2025-10-15 13:24:32] Threads: 4
[2025-10-15 13:24:32] Checking for CVMFS
[2025-10-15 13:24:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 13:24:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 13:24:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 13:24:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 13:24:32] 2.9.2.0 2647668 88 57452 151731 3 188 22668876 36864001 0 130560 0 122912 99.984 5487 1431 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-15 13:24:32] CVMFS is ok
[2025-10-15 13:24:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-15 13:24:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-15 13:24:32] Further information can be found at the LHC@home message board.
[2025-10-15 13:24:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 13:24:32] Checking for apptainer binary...
[2025-10-15 13:24:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 13:24:32] Running /usr/bin/apptainer --version
[2025-10-15 13:24:32] apptainer version 1.4.1-1.1
[2025-10-15 13:24:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 13:24:32] thA373a
[2025-10-15 13:24:32] apptainer works
[2025-10-15 13:24:32] Set ATHENA_PROC_NUMBER=4
[2025-10-15 13:24:32] Set ATHENA_CORE_NUMBER=4
[2025-10-15 13:24:32] Starting ATLAS job with PandaID=6845709821
[2025-10-15 13:24:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 14:40:51]  *** The last 200 lines of the pilot log: ***
[2025-10-15 14:40:51] 2025-10-15 12:40:22,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-15 14:40:51] 2025-10-15 12:40:22,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-15 14:40:51] 2025-10-15 12:40:22,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-15 14:40:51] 2025-10-15 12:40:22,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-15 14:40:51] 2025-10-15 12:40:22,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-15 14:40:51] 2025-10-15 12:40:22,701 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-15 14:40:51] 2025-10-15 12:40:22,701 | INFO     | job 6845709821 has completed (purged errors)
[2025-10-15 14:40:51] 2025-10-15 12:40:22,701 | INFO     | overall cleanup function is called
[2025-10-15 14:40:51] 2025-10-15 12:40:23,708 | INFO     | --- collectZombieJob: --- 10, [2704251]
[2025-10-15 14:40:51] 2025-10-15 12:40:23,708 | INFO     | zombie collector waiting for pid 2704251
[2025-10-15 14:40:51] 2025-10-15 12:40:23,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-15 14:40:51] 2025-10-15 12:40:23,708 | INFO     | collected zombie processes
[2025-10-15 14:40:51] 2025-10-15 12:40:23,708 | INFO     | will attempt to kill all subprocesses of pid=2704251
[2025-10-15 14:40:51] 2025-10-15 12:40:23,761 | INFO     | process IDs to be killed: [2704251] (in reverse order)
[2025-10-15 14:40:51] 2025-10-15 12:40:23,797 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 14:40:51] 2025-10-15 12:40:23,797 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 14:40:51] 2025-10-15 12:40:23,800 | INFO     | did not find any defunct processes belonging to 2704251
[2025-10-15 14:40:51] 2025-10-15 12:40:23,801 | INFO     | did not find any defunct processes belonging to 2704251
[2025-10-15 14:40:51] 2025-10-15 12:40:23,801 | INFO     | ready for new job
[2025-10-15 14:40:51] 2025-10-15 12:40:23,801 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 14:40:51] 2025-10-15 12:40:23,802 | INFO     | ***************************************
[2025-10-15 14:40:51] 2025-10-15 12:40:23,802 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-15 14:40:51] 2025-10-15 12:40:23,802 | INFO     | ***************************************
[2025-10-15 14:40:51] 2025-10-15 12:40:23,802 | INFO     | 
[2025-10-15 14:40:51] 2025-10-15 12:40:23,803 | INFO     | architecture information:
[2025-10-15 14:40:51] 2025-10-15 12:40:23,803 | INFO     | executing command: cat /etc/os-release
[2025-10-15 14:40:51] 2025-10-15 12:40:23,817 | INFO     | cat /etc/os-release:
[2025-10-15 14:40:51] NAME="CentOS Linux"
[2025-10-15 14:40:51] VERSION="7 (Core)"
[2025-10-15 14:40:51] ID="centos"
[2025-10-15 14:40:51] ID_LIKE="rhel fedora"
[2025-10-15 14:40:51] VERSION_ID="7"
[2025-10-15 14:40:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 14:40:51] ANSI_COLOR="0;31"
[2025-10-15 14:40:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 14:40:51] HOME_URL="https://www.centos.org/"
[2025-10-15 14:40:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 14:40:51] 
[2025-10-15 14:40:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 14:40:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 14:40:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 14:40:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 14:40:51] 
[2025-10-15 14:40:51] 2025-10-15 12:40:23,818 | INFO     | ***************************************
[2025-10-15 14:40:51] 2025-10-15 12:40:24,321 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-15 14:40:51] 2025-10-15 12:40:24,339 | INFO     | sufficient remaining disk space (338375475200 B)
[2025-10-15 14:40:51] 2025-10-15 12:40:24,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 14:40:51] 2025-10-15 12:40:24,339 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 14:40:51] 2025-10-15 12:40:24,339 | INFO     | update_server=False
[2025-10-15 14:40:51] 2025-10-15 12:40:24,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 14:40:51] 2025-10-15 12:40:24,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 14:40:51] 2025-10-15 12:40:24,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 14:40:51] 2025-10-15 12:40:24,339 | INFO     | aborting loop
[2025-10-15 14:40:51] 2025-10-15 12:40:24,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 14:40:51] 2025-10-15 12:40:24,340 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-15 14:40:51] 2025-10-15 12:40:24,340 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 14:40:51] 2025-10-15 12:40:24,340 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 14:40:51] 2025-10-15 12:40:24,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 14:40:51] 2025-10-15 12:40:24,777 | INFO     | all data control threads have been joined
[2025-10-15 14:40:51] 2025-10-15 12:40:25,175 | INFO     | all job control threads have been joined
[2025-10-15 14:40:51] 2025-10-15 12:40:25,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 14:40:51] 2025-10-15 12:40:25,345 | INFO     | [job] retrieve thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:25,345 | INFO     | [job] queue monitor thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:25,345 | INFO     | [job] job monitor thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:25,400 | INFO     | [payload] validate_post thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:25,781 | INFO     | all payload control threads have been joined
[2025-10-15 14:40:51] 2025-10-15 12:40:25,783 | INFO     | [data] control thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:25,999 | INFO     | [job] validate thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:26,078 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:26,129 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:26,181 | INFO     | [job] control thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:26,253 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:26,444 | INFO     | [payload] failed_post thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:26,746 | INFO     | [data] copytool_in thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:26,787 | INFO     | [payload] control thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:27,243 | INFO     | [data] copytool_out thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:28,342 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:35,028 | INFO     | job.realtimelogging is not enabled
[2025-10-15 14:40:51] 2025-10-15 12:40:36,033 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 14:40:51] 2025-10-15 12:40:45,193 | INFO     | [monitor] cgroup control has ended
[2025-10-15 14:40:51] 2025-10-15 12:40:46,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140621456709440)>', '<ExcThread(monitor, started 140620358207232)>']
[2025-10-15 14:40:51] 2025-10-15 12:40:46,452 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 14:40:51] 2025-10-15 12:40:46,452 | INFO     | [monitor] control thread has ended
[2025-10-15 14:40:51] 2025-10-15 12:40:51,218 | INFO     | all workflow threads have been joined
[2025-10-15 14:40:51] 2025-10-15 12:40:51,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 14:40:51] 2025-10-15 12:40:51,219 | INFO     | traces error code: 0
[2025-10-15 14:40:51] 2025-10-15 12:40:51,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 14:40:51] 2025-10-15 12:40:51,300 [wrapper] ==== pilot stdout END ====
[2025-10-15 14:40:51] 2025-10-15 12:40:51,304 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 14:40:51] 2025-10-15 12:40:51,307 [wrapper] pilotpid: 2697681
[2025-10-15 14:40:51] 2025-10-15 12:40:51,311 [wrapper] Pilot exit status: 0
[2025-10-15 14:40:51] 2025-10-15 12:40:51,323 [wrapper] pandaids: 6845709821
[2025-10-15 14:40:51] 2025-10-15 12:40:51,347 [wrapper] cleanup supervisor_pilot 2717887 2697682
[2025-10-15 14:40:51] 2025-10-15 12:40:51,351 [wrapper] Test setup, not cleaning
[2025-10-15 14:40:51] 2025-10-15 12:40:51,355 [wrapper] apfmon messages muted
[2025-10-15 14:40:51] 2025-10-15 12:40:51,359 [wrapper] ==== wrapper stdout END ====
[2025-10-15 14:40:51] 2025-10-15 12:40:51,363 [wrapper] ==== wrapper stderr END ====
[2025-10-15 14:40:51]  *** Error codes and diagnostics ***
[2025-10-15 14:40:51]     "exeErrorCode": 0,
[2025-10-15 14:40:51]     "exeErrorDiag": "",
[2025-10-15 14:40:51]     "pilotErrorCode": 0,
[2025-10-15 14:40:51]     "pilotErrorDiag": "",
[2025-10-15 14:40:51]  *** Listing of results directory ***
[2025-10-15 14:40:51] total 420976
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc    557409 Oct 15 11:36 pilot3.tar.gz
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc      5112 Oct 15 12:20 queuedata.json
[2025-10-15 14:40:51] -rwx------ 1 boinc boinc     36292 Oct 15 12:20 runpilot2-wrapper.sh
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc       100 Oct 15 13:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 14:40:51] -rwxr-xr-x 1 boinc boinc      7986 Oct 15 13:24 run_atlas
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc       105 Oct 15 13:24 job.xml
[2025-10-15 14:40:51] -rw-r--r-- 2 boinc boinc 226108635 Oct 15 13:24 EVNT.46776529._000268.pool.root.1
[2025-10-15 14:40:51] -rw-r--r-- 2 boinc boinc    569680 Oct 15 13:24 input.tar.gz
[2025-10-15 14:40:51] -rw-r--r-- 2 boinc boinc     15120 Oct 15 13:24 start_atlas.sh
[2025-10-15 14:40:51] drwxrwx--x 2 boinc boinc      4096 Oct 15 13:24 shared
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc         0 Oct 15 13:24 boinc_setup_complete
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc      6376 Oct 15 13:24 init_data.xml
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc         0 Oct 15 13:24 boinc_lockfile
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc      2559 Oct 15 13:24 pandaJob.out
[2025-10-15 14:40:51] -rw------- 1 boinc boinc    973999 Oct 15 13:24 agis_schedconf.cvmfs.json
[2025-10-15 14:40:51] -rw------- 1 boinc boinc   1560740 Oct 15 13:24 agis_ddmendpoints.agis.ALL.json
[2025-10-15 14:40:51] drwx------ 5 boinc boinc      4096 Oct 15 13:24 pilot3
[2025-10-15 14:40:51] -rw------- 1 boinc boinc 199193422 Oct 15 14:39 HITS.46776533._005348.pool.root.1
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc       529 Oct 15 14:40 boinc_task_state.xml
[2025-10-15 14:40:51] -rw------- 1 boinc boinc        95 Oct 15 14:40 pilot_heartbeat.json
[2025-10-15 14:40:51] -rw------- 1 boinc boinc      1020 Oct 15 14:40 memory_monitor_summary.json
[2025-10-15 14:40:51] -rw------- 1 boinc boinc    273847 Oct 15 14:40 log.46776533._005348.job.log.tgz.1
[2025-10-15 14:40:51] -rw------- 1 boinc boinc      7759 Oct 15 14:40 heartbeat.json
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc        27 Oct 15 14:40 wrapper_checkpoint.txt
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc      8192 Oct 15 14:40 boinc_mmap_file
[2025-10-15 14:40:51] -rw------- 1 boinc boinc      4628 Oct 15 14:40 pilotlog.txt
[2025-10-15 14:40:51] -rw------- 1 boinc boinc    670890 Oct 15 14:40 log.46776533._005348.job.log.1
[2025-10-15 14:40:51] -rw------- 1 boinc boinc       357 Oct 15 14:40 output.list
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc       620 Oct 15 14:40 runtime_log
[2025-10-15 14:40:51] -rw------- 1 boinc boinc    962560 Oct 15 14:40 result.tar.gz
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc      8782 Oct 15 14:40 runtime_log.err
[2025-10-15 14:40:51] -rw------- 1 boinc boinc       659 Oct 15 14:40 rIENDmLnDT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmcOWMDmDM4Mcm.diag
[2025-10-15 14:40:51] -rw-r--r-- 1 boinc boinc     11431 Oct 15 14:40 stderr.txt
[2025-10-15 14:40:51] HITS file was successfully produced:
[2025-10-15 14:40:51] -rw------- 1 boinc boinc 199193422 Oct 15 14:39 shared/HITS.pool.root.1
[2025-10-15 14:40:51]  *** Contents of shared directory: ***
[2025-10-15 14:40:51] total 416864
[2025-10-15 14:40:51] -rw-r--r-- 2 boinc boinc 226108635 Oct 15 13:24 ATLAS.root_0
[2025-10-15 14:40:51] -rw-r--r-- 2 boinc boinc    569680 Oct 15 13:24 input.tar.gz
[2025-10-15 14:40:51] -rw-r--r-- 2 boinc boinc     15120 Oct 15 13:24 start_atlas.sh
[2025-10-15 14:40:51] -rw------- 1 boinc boinc 199193422 Oct 15 14:39 HITS.pool.root.1
[2025-10-15 14:40:51] -rw------- 1 boinc boinc    962560 Oct 15 14:40 result.tar.gz
14:40:53 (2693890): run_atlas exited; CPU time 17152.966545
14:40:53 (2693890): called boinc_finish(0)

</stderr_txt>
]]>

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