Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:49:07 (317616): wrapper (7.7.26015): starting
11:49:07 (317616): wrapper: running run_atlas (--nthreads 3)
[2025-10-15 11:49:07] Arguments: --nthreads 3
[2025-10-15 11:49:07] Threads: 3
[2025-10-15 11:49:07] Checking for CVMFS
[2025-10-15 11:49:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 11:49:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 11:49:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 11:49:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 11:49:11] 2.9.2.0 317812 0 30028 151729 3 1 29202877 36864000 0 130560 0 0 0.000 1291 2587 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-15 11:49:11] CVMFS is ok
[2025-10-15 11:49:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-15 11:49:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-15 11:49:11] Further information can be found at the LHC@home message board.
[2025-10-15 11:49:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 11:49:11] Checking for apptainer binary...
[2025-10-15 11:49:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 11:49:11] Running /usr/bin/apptainer --version
[2025-10-15 11:49:11] apptainer version 1.4.1-1.1
[2025-10-15 11:49:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 11:49:11] cosA133a
[2025-10-15 11:49:11] apptainer works
[2025-10-15 11:49:11] Set ATHENA_PROC_NUMBER=3
[2025-10-15 11:49:11] Set ATHENA_CORE_NUMBER=3
[2025-10-15 11:49:11] Starting ATLAS job with PandaID=6845685573
[2025-10-15 11:49:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 13:25:44]  *** The last 200 lines of the pilot log: ***
[2025-10-15 13:25:44] 2025-10-15 11:25:00,317 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6845685573/log.46776533._002195.job.log.tgz.1 /local/data/boinc/slots/0/log.46776533._0021
[2025-10-15 13:25:44] 2025-10-15 11:25:00,329 | INFO     | adding to output.list: log.46776533._002195.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/fb/log.46776533._002195.job.log.tg
[2025-10-15 13:25:44] 2025-10-15 11:25:00,329 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-15 13:25:44] 2025-10-15 11:25:00,329 | INFO     | summary of transferred files:
[2025-10-15 13:25:44] 2025-10-15 11:25:00,329 | INFO     |  -- lfn=log.46776533._002195.job.log.tgz.1, status_code=0, status=transferred
[2025-10-15 13:25:44] 2025-10-15 11:25:00,330 | INFO     | stage-out finished correctly
[2025-10-15 13:25:44] 2025-10-15 11:25:00,360 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-15 13:25:44] 2025-10-15 11:25:00,388 | INFO     | job 6845685573 has state=finished
[2025-10-15 13:25:44] 2025-10-15 11:25:00,388 | INFO     | preparing for final server update for job 6845685573 in state='finished'
[2025-10-15 13:25:44] 2025-10-15 11:25:00,434 | INFO     | time since job start (5730s) is within the limit (172800.0s)
[2025-10-15 13:25:44] 2025-10-15 11:25:01,003 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-15 13:25:44] 2025-10-15 11:25:01,003 | INFO     | this job has now completed (state=finished)
[2025-10-15 13:25:44] 2025-10-15 11:25:01,003 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-15 13:25:44] 2025-10-15 11:25:01,003 | INFO     | log transfer has been attempted: DONE
[2025-10-15 13:25:44] 2025-10-15 11:25:01,003 | INFO     | job 6845685573 has finished - writing final server update
[2025-10-15 13:25:44] 2025-10-15 11:25:01,003 | INFO     | total number of processed events: 400 (read)
[2025-10-15 13:25:44] 2025-10-15 11:25:01,004 | INFO     | executing command: lscpu
[2025-10-15 13:25:44] 2025-10-15 11:25:01,018 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-15 13:25:44] 2025-10-15 11:25:02,439 | INFO     | time since job start (5732s) is within the limit (172800.0s)
[2025-10-15 13:25:44] 2025-10-15 11:25:04,445 | INFO     | time since job start (5734s) is within the limit (172800.0s)
[2025-10-15 13:25:44] 2025-10-15 11:25:05,854 | WARNING  | process 328344 can no longer be monitored (due to stat problems) - aborting
[2025-10-15 13:25:44] 2025-10-15 11:25:05,854 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6845685573/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 13:25:44] 2025-10-15 11:25:05,855 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6845685573/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 13:25:44] 2025-10-15 11:25:05,855 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-15 13:25:44] 2025-10-15 11:25:05,855 | WARNING  | maxPSS not found in memory monitor output
[2025-10-15 13:25:44] 2025-10-15 11:25:05,855 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2415190 B
[2025-10-15 13:25:44] 2025-10-15 11:25:05,855 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16020 B
[2025-10-15 13:25:44] 2025-10-15 11:25:05,855 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-15 13:25:44] 2025-10-15 11:25:06,143 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-15 13:25:44] 2025-10-15 11:25:06,146 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4299.8623333333335
[2025-10-15 13:25:44] 2025-10-15 11:25:06,148 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6845685573/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,148 | INFO     | extracted standard info from prmon json
[2025-10-15 13:25:44] 2025-10-15 11:25:06,148 | INFO     | extracted standard memory fields from prmon json
[2025-10-15 13:25:44] 2025-10-15 11:25:06,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-15 13:25:44] 2025-10-15 11:25:06,149 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-15 13:25:44] 2025-10-15 11:25:06,149 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-15 13:25:44] 2025-10-15 11:25:06,150 | INFO     | fitting pss+swap vs Time
[2025-10-15 13:25:44] 2025-10-15 11:25:06,150 | INFO     | sum of square deviations: 204163828.0
[2025-10-15 13:25:44] 2025-10-15 11:25:06,151 | INFO     | sum of deviations: -2488693859.9999995
[2025-10-15 13:25:44] 2025-10-15 11:25:06,151 | INFO     | mean x: 1760524724.0
[2025-10-15 13:25:44] 2025-10-15 11:25:06,151 | INFO     | mean y: 2397661.011494253
[2025-10-15 13:25:44] 2025-10-15 11:25:06,151 | INFO     | -- intersect: 21462649038.140816
[2025-10-15 13:25:44] 2025-10-15 11:25:06,151 | INFO     | intersect: 21462649038.140816
[2025-10-15 13:25:44] 2025-10-15 11:25:06,151 | INFO     | chi2: 0.06956554491044435
[2025-10-15 13:25:44] 2025-10-15 11:25:06,151 | INFO     | -- intersect: 21462649038.140816
[2025-10-15 13:25:44] 2025-10-15 11:25:06,151 | INFO     | current memory leak: -12.19 B/s (using 87 data points, chi2=0.07)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | could have reported an average CPU frequency of 4271 MHz (7 samples)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | ..............................
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | . Timing measurements:
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | . get job = 0 s
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | . initial setup = 1 s
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | . payload setup = 6 s
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | . stage-in = 0 s
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | sufficient remaining disk space (332098699264 B)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | . payload execution = 5703 s
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | . stage-out = 0 s
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | . log creation = 0 s
[2025-10-15 13:25:44] 2025-10-15 11:25:06,152 | INFO     | ..............................
[2025-10-15 13:25:44] 2025-10-15 11:25:06,184 | INFO     | 
[2025-10-15 13:25:44] 2025-10-15 11:25:06,184 | INFO     | job summary report
[2025-10-15 13:25:44] 2025-10-15 11:25:06,184 | INFO     | --------------------------------------------------
[2025-10-15 13:25:44] 2025-10-15 11:25:06,184 | INFO     | PanDA job id: 6845685573
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | task id: 46776533
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | errors: (none)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | pilot state: finished 
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | transexitcode: 0
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | exeerrorcode: 0
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | exeerrordiag: 
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | exitcode: 0
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | exitmsg: OK
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | cpuconsumptiontime: 16503 s
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | nevents: 400
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | neventsw: 0
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | pid: 328344
[2025-10-15 13:25:44] 2025-10-15 11:25:06,185 | INFO     | pgrp: 328344
[2025-10-15 13:25:44] 2025-10-15 11:25:06,186 | INFO     | corecount: 3
[2025-10-15 13:25:44] 2025-10-15 11:25:06,186 | INFO     | event service: False
[2025-10-15 13:25:44] 2025-10-15 11:25:06,186 | INFO     | sizes: {0: 2348930, 7: 2349192, 11: 2349220, 5713: 2375975, 5714: 2385035, 5720: 2385173}
[2025-10-15 13:25:44] 2025-10-15 11:25:06,186 | INFO     | --------------------------------------------------
[2025-10-15 13:25:44] 2025-10-15 11:25:06,186 | INFO     | 
[2025-10-15 13:25:44] 2025-10-15 11:25:06,186 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6845685573: 2744158 B (within 2537553920 B limit)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,186 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-15 13:25:44] 2025-10-15 11:25:06,186 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6845685573/HITS.46776533._002195.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,186 | INFO     | total size of present files: 0 B (workdir size: 2744158 B)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,188 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6845685573/HITS.46776533._002195.pool.root.1 since it does not exist
[2025-10-15 13:25:44] 2025-10-15 11:25:06,197 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,197 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,197 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,197 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | job 6845685573 has completed (purged errors)
[2025-10-15 13:25:44] 2025-10-15 11:25:06,198 | INFO     | overall cleanup function is called
[2025-10-15 13:25:44] 2025-10-15 11:25:06,228 | INFO     | number of running child processes to parent process 328344: 1
[2025-10-15 13:25:44] 2025-10-15 11:25:06,228 | INFO     | maximum number of monitored processes: 6
[2025-10-15 13:25:44] 2025-10-15 11:25:06,228 | INFO     | aborting job monitoring since job object (job id=6845685573) has expired
[2025-10-15 13:25:44] 2025-10-15 11:25:07,205 | INFO     | --- collectZombieJob: --- 10, [328344]
[2025-10-15 13:25:44] 2025-10-15 11:25:07,205 | INFO     | zombie collector waiting for pid 328344
[2025-10-15 13:25:44] 2025-10-15 11:25:07,205 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-15 13:25:44] 2025-10-15 11:25:07,206 | INFO     | collected zombie processes
[2025-10-15 13:25:44] 2025-10-15 11:25:07,206 | INFO     | will attempt to kill all subprocesses of pid=328344
[2025-10-15 13:25:44] 2025-10-15 11:25:07,242 | INFO     | process IDs to be killed: [328344] (in reverse order)
[2025-10-15 13:25:44] 2025-10-15 11:25:07,267 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 13:25:44] 2025-10-15 11:25:07,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 13:25:44] 2025-10-15 11:25:07,268 | INFO     | did not find any defunct processes belonging to 328344
[2025-10-15 13:25:44] 2025-10-15 11:25:07,268 | INFO     | did not find any defunct processes belonging to 328344
[2025-10-15 13:25:44] 2025-10-15 11:25:07,269 | INFO     | ready for new job
[2025-10-15 13:25:44] 2025-10-15 11:25:07,269 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 13:25:44] 2025-10-15 11:25:07,269 | INFO     | ***************************************
[2025-10-15 13:25:44] 2025-10-15 11:25:07,269 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-15 13:25:44] 2025-10-15 11:25:07,269 | INFO     | ***************************************
[2025-10-15 13:25:44] 2025-10-15 11:25:07,269 | INFO     | 
[2025-10-15 13:25:44] 2025-10-15 11:25:07,270 | INFO     | architecture information:
[2025-10-15 13:25:44] 2025-10-15 11:25:07,270 | INFO     | executing command: cat /etc/os-release
[2025-10-15 13:25:44] 2025-10-15 11:25:07,280 | INFO     | cat /etc/os-release:
[2025-10-15 13:25:44] NAME="CentOS Linux"
[2025-10-15 13:25:44] VERSION="7 (Core)"
[2025-10-15 13:25:44] ID="centos"
[2025-10-15 13:25:44] ID_LIKE="rhel fedora"
[2025-10-15 13:25:44] VERSION_ID="7"
[2025-10-15 13:25:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 13:25:44] ANSI_COLOR="0;31"
[2025-10-15 13:25:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 13:25:44] HOME_URL="https://www.centos.org/"
[2025-10-15 13:25:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 13:25:44] 
[2025-10-15 13:25:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 13:25:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 13:25:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 13:25:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 13:25:44] 
[2025-10-15 13:25:44] 2025-10-15 11:25:07,280 | INFO     | ***************************************
[2025-10-15 13:25:44] 2025-10-15 11:25:07,783 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-15 13:25:44] 2025-10-15 11:25:07,796 | INFO     | sufficient remaining disk space (332101844992 B)
[2025-10-15 13:25:44] 2025-10-15 11:25:07,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 13:25:44] 2025-10-15 11:25:07,796 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 13:25:44] 2025-10-15 11:25:07,796 | INFO     | update_server=False
[2025-10-15 13:25:44] 2025-10-15 11:25:07,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 13:25:44] 2025-10-15 11:25:07,796 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 13:25:44] 2025-10-15 11:25:07,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 13:25:44] 2025-10-15 11:25:07,796 | INFO     | aborting loop
[2025-10-15 13:25:44] 2025-10-15 11:25:07,848 | INFO     | all payload control threads have been joined
[2025-10-15 13:25:44] 2025-10-15 11:25:08,122 | INFO     | all job control threads have been joined
[2025-10-15 13:25:44] 2025-10-15 11:25:08,291 | INFO     | all data control threads have been joined
[2025-10-15 13:25:44] 2025-10-15 11:25:08,371 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 13:25:44] 2025-10-15 11:25:08,802 | INFO     | [job] queue monitor thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:08,802 | INFO     | [job] retrieve thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:08,803 | INFO     | [job] job monitor thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:08,854 | INFO     | [payload] control thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:09,128 | INFO     | [job] control thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:09,296 | INFO     | [data] control thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:09,363 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:09,468 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:09,557 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:09,744 | INFO     | [job] validate thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:09,835 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:09,996 | INFO     | [payload] validate_post thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:10,059 | INFO     | [payload] failed_post thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:10,285 | INFO     | [data] copytool_in thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:10,377 | INFO     | [data] copytool_out thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:10,898 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 13:25:44] 2025-10-15 11:25:14,905 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 13:25:44] 2025-10-15 11:25:37,561 | INFO     | PID=321899 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-15 13:25:44] 2025-10-15 11:25:37,561 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 13:25:44] 2025-10-15 11:25:37,561 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 13:25:44] 2025-10-15 11:25:37,561 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 13:25:44] 2025-10-15 11:25:38,318 | INFO     | [monitor] cgroup control has ended
[2025-10-15 13:25:44] 2025-10-15 11:25:39,011 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140673767126848)>', '<ExcThread(monitor, started 140672929625856)>']
[2025-10-15 13:25:44] 2025-10-15 11:25:39,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 13:25:44] 2025-10-15 11:25:39,572 | INFO     | [monitor] control thread has ended
[2025-10-15 13:25:44] 2025-10-15 11:25:44,037 | INFO     | all workflow threads have been joined
[2025-10-15 13:25:44] 2025-10-15 11:25:44,038 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 13:25:44] 2025-10-15 11:25:44,038 | INFO     | traces error code: 0
[2025-10-15 13:25:44] 2025-10-15 11:25:44,039 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 13:25:44] 2025-10-15 11:25:44,083 [wrapper] ==== pilot stdout END ====
[2025-10-15 13:25:44] 2025-10-15 11:25:44,086 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 13:25:44] 2025-10-15 11:25:44,089 [wrapper] pilotpid: 321899
[2025-10-15 13:25:44] 2025-10-15 11:25:44,092 [wrapper] Pilot exit status: 0
[2025-10-15 13:25:44] 2025-10-15 11:25:44,100 [wrapper] pandaids: 6845685573
[2025-10-15 13:25:44] 2025-10-15 11:25:44,116 [wrapper] cleanup supervisor_pilot  340900 321900
[2025-10-15 13:25:44] 2025-10-15 11:25:44,119 [wrapper] Test setup, not cleaning
[2025-10-15 13:25:44] 2025-10-15 11:25:44,121 [wrapper] apfmon messages muted
[2025-10-15 13:25:44] 2025-10-15 11:25:44,124 [wrapper] ==== wrapper stdout END ====
[2025-10-15 13:25:44] 2025-10-15 11:25:44,126 [wrapper] ==== wrapper stderr END ====
[2025-10-15 13:25:44]  *** Error codes and diagnostics ***
[2025-10-15 13:25:44]     "exeErrorCode": 0,
[2025-10-15 13:25:44]     "exeErrorDiag": "",
[2025-10-15 13:25:44]     "pilotErrorCode": 0,
[2025-10-15 13:25:44]     "pilotErrorDiag": "",
[2025-10-15 13:25:44]  *** Listing of results directory ***
[2025-10-15 13:25:44] total 426628
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc    557409 Oct 15 11:36 pilot3.tar.gz
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc      5112 Oct 15 11:40 queuedata.json
[2025-10-15 13:25:44] -rwx------ 1 boinc boinc     36292 Oct 15 11:42 runpilot2-wrapper.sh
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc       100 Oct 15 11:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 13:25:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 15 11:49 run_atlas
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc       105 Oct 15 11:49 job.xml
[2025-10-15 13:25:44] -rw-r--r-- 2 boinc boinc 227551793 Oct 15 11:49 EVNT.46776529._000142.pool.root.1
[2025-10-15 13:25:44] -rw-r--r-- 2 boinc boinc    569680 Oct 15 11:49 input.tar.gz
[2025-10-15 13:25:44] -rw-r--r-- 2 boinc boinc     15120 Oct 15 11:49 start_atlas.sh
[2025-10-15 13:25:44] drwxrwx--x 2 boinc boinc      4096 Oct 15 11:49 shared
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc         0 Oct 15 11:49 boinc_setup_complete
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc      6200 Oct 15 11:49 init_data.xml
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc         0 Oct 15 11:49 boinc_lockfile
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc      2560 Oct 15 11:49 pandaJob.out
[2025-10-15 13:25:44] -rw------- 1 boinc boinc    973999 Oct 15 11:49 agis_schedconf.cvmfs.json
[2025-10-15 13:25:44] -rw------- 1 boinc boinc   1560740 Oct 15 11:49 agis_ddmendpoints.agis.ALL.json
[2025-10-15 13:25:44] drwx------ 5 boinc boinc      4096 Oct 15 11:49 pilot3
[2025-10-15 13:25:44] -rw------- 1 boinc boinc 203203127 Oct 15 13:24 HITS.46776533._002195.pool.root.1
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc       529 Oct 15 13:24 boinc_task_state.xml
[2025-10-15 13:25:44] -rw------- 1 boinc boinc      1012 Oct 15 13:24 memory_monitor_summary.json
[2025-10-15 13:25:44] -rw------- 1 boinc boinc        95 Oct 15 13:24 pilot_heartbeat.json
[2025-10-15 13:25:44] -rw------- 1 boinc boinc    270165 Oct 15 13:25 log.46776533._002195.job.log.tgz.1
[2025-10-15 13:25:44] -rw------- 1 boinc boinc      7756 Oct 15 13:25 heartbeat.json
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc        27 Oct 15 13:25 wrapper_checkpoint.txt
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc      8192 Oct 15 13:25 boinc_mmap_file
[2025-10-15 13:25:44] -rw------- 1 boinc boinc      4751 Oct 15 13:25 pilotlog.txt
[2025-10-15 13:25:44] -rw------- 1 boinc boinc    834923 Oct 15 13:25 log.46776533._002195.job.log.1
[2025-10-15 13:25:44] -rw------- 1 boinc boinc       357 Oct 15 13:25 output.list
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc       620 Oct 15 13:25 runtime_log
[2025-10-15 13:25:44] -rw------- 1 boinc boinc   1126400 Oct 15 13:25 result.tar.gz
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc      8787 Oct 15 13:25 runtime_log.err
[2025-10-15 13:25:44] -rw------- 1 boinc boinc       660 Oct 15 13:25 1IuLDmXCDT8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0FnNDmk0IWtm.diag
[2025-10-15 13:25:44] -rw-r--r-- 1 boinc boinc     22621 Oct 15 13:25 stderr.txt
[2025-10-15 13:25:44] HITS file was successfully produced:
[2025-10-15 13:25:44] -rw------- 1 boinc boinc 203203127 Oct 15 13:24 shared/HITS.pool.root.1
[2025-10-15 13:25:44]  *** Contents of shared directory: ***
[2025-10-15 13:25:44] total 422348
[2025-10-15 13:25:44] -rw-r--r-- 2 boinc boinc 227551793 Oct 15 11:49 ATLAS.root_0
[2025-10-15 13:25:44] -rw-r--r-- 2 boinc boinc    569680 Oct 15 11:49 input.tar.gz
[2025-10-15 13:25:44] -rw-r--r-- 2 boinc boinc     15120 Oct 15 11:49 start_atlas.sh
[2025-10-15 13:25:44] -rw------- 1 boinc boinc 203203127 Oct 15 13:24 HITS.pool.root.1
[2025-10-15 13:25:44] -rw------- 1 boinc boinc   1126400 Oct 15 13:25 result.tar.gz
13:25:45 (317616): run_atlas exited; CPU time 16531.447510
13:25:45 (317616): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN