Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:16:30 (274142): wrapper (7.7.26015): starting
12:16:30 (274142): wrapper: running run_atlas (--nthreads 4)
[2025-10-15 12:16:30] Arguments: --nthreads 4
[2025-10-15 12:16:30] Threads: 4
[2025-10-15 12:16:30] Checking for CVMFS
[2025-10-15 12:16:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 12:16:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 12:16:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 12:16:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 12:16:30] 2.9.2.0 249724 61 50824 151731 2 56 28941693 36864001 0 130560 0 64708 99.971 5416 1325 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-15 12:16:30] CVMFS is ok
[2025-10-15 12:16:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-15 12:16:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-15 12:16:30] Further information can be found at the LHC@home message board.
[2025-10-15 12:16:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 12:16:30] Checking for apptainer binary...
[2025-10-15 12:16:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 12:16:30] Running /usr/bin/apptainer --version
[2025-10-15 12:16:30] apptainer version 1.4.1-1.1
[2025-10-15 12:16:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 12:16:30] thA325
[2025-10-15 12:16:30] apptainer works
[2025-10-15 12:16:30] Set ATHENA_PROC_NUMBER=4
[2025-10-15 12:16:30] Set ATHENA_CORE_NUMBER=4
[2025-10-15 12:16:30] Starting ATLAS job with PandaID=6833167428
[2025-10-15 12:16:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 13:21:47]  *** The last 200 lines of the pilot log: ***
[2025-10-15 13:21:47] 2025-10-15 11:20:41,079 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 13:21:47] 2025-10-15 11:20:41,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 13:21:47] 2025-10-15 11:20:41,081 | INFO     | did not find any defunct processes belonging to 284481
[2025-10-15 13:21:47] 2025-10-15 11:20:41,082 | INFO     | did not find any defunct processes belonging to 284481
[2025-10-15 13:21:47] 2025-10-15 11:20:41,082 | INFO     | ready for new job
[2025-10-15 13:21:47] 2025-10-15 11:20:41,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 13:21:47] 2025-10-15 11:20:41,083 | INFO     | ***************************************
[2025-10-15 13:21:47] 2025-10-15 11:20:41,083 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-15 13:21:47] 2025-10-15 11:20:41,083 | INFO     | ***************************************
[2025-10-15 13:21:47] 2025-10-15 11:20:41,083 | INFO     | 
[2025-10-15 13:21:47] 2025-10-15 11:20:41,083 | INFO     | architecture information:
[2025-10-15 13:21:47] 2025-10-15 11:20:41,083 | INFO     | executing command: cat /etc/os-release
[2025-10-15 13:21:47] 2025-10-15 11:20:41,095 | INFO     | cat /etc/os-release:
[2025-10-15 13:21:47] NAME="CentOS Linux"
[2025-10-15 13:21:47] VERSION="7 (Core)"
[2025-10-15 13:21:47] ID="centos"
[2025-10-15 13:21:47] ID_LIKE="rhel fedora"
[2025-10-15 13:21:47] VERSION_ID="7"
[2025-10-15 13:21:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 13:21:47] ANSI_COLOR="0;31"
[2025-10-15 13:21:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 13:21:47] HOME_URL="https://www.centos.org/"
[2025-10-15 13:21:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 13:21:47] 
[2025-10-15 13:21:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 13:21:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 13:21:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 13:21:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 13:21:47] 
[2025-10-15 13:21:47] 2025-10-15 11:20:41,095 | INFO     | ***************************************
[2025-10-15 13:21:47] 2025-10-15 11:20:41,598 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-15 13:21:47] 2025-10-15 11:20:41,614 | INFO     | sufficient remaining disk space (231454277632 B)
[2025-10-15 13:21:47] 2025-10-15 11:20:41,614 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 13:21:47] 2025-10-15 11:20:41,614 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 13:21:47] 2025-10-15 11:20:41,614 | INFO     | update_server=False
[2025-10-15 13:21:47] 2025-10-15 11:20:41,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 13:21:47] 2025-10-15 11:20:41,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 13:21:47] 2025-10-15 11:20:41,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 13:21:47] 2025-10-15 11:20:41,615 | INFO     | aborting loop
[2025-10-15 13:21:47] 2025-10-15 11:20:41,615 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 13:21:47] 2025-10-15 11:20:41,845 | INFO     | all payload control threads have been joined
[2025-10-15 13:21:47] 2025-10-15 11:20:42,040 | INFO     | all data control threads have been joined
[2025-10-15 13:21:47] 2025-10-15 11:20:42,176 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 13:21:47] 2025-10-15 11:20:42,620 | INFO     | [job] retrieve thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:42,621 | INFO     | [job] job monitor thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:42,621 | INFO     | [job] queue monitor thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:42,676 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:42,849 | INFO     | [payload] control thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:43,046 | INFO     | [data] control thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:43,241 | INFO     | [payload] validate_post thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:43,306 | INFO     | all job control threads have been joined
[2025-10-15 13:21:47] 2025-10-15 11:20:43,621 | INFO     | [data] copytool_out thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:44,007 | INFO     | [job] validate thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:44,073 | INFO     | [payload] failed_post thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:44,078 | INFO     | [data] copytool_in thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:44,112 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:44,121 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:44,312 | INFO     | [job] control thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:46,183 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:20:52,593 | INFO     | job.realtimelogging is not enabled
[2025-10-15 13:21:47] 2025-10-15 11:20:53,599 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 13:21:47] 2025-10-15 11:21:12,483 | INFO     | PID=277934 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-15 13:21:47] 2025-10-15 11:21:12,484 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 13:21:47] 2025-10-15 11:21:12,484 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 13:21:47] 2025-10-15 11:21:12,484 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 13:21:47] 2025-10-15 11:21:41,425 | INFO     | [monitor] cgroup control has ended
[2025-10-15 13:21:47] 2025-10-15 11:21:42,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085371594560)>', '<ExcThread(monitor, started 140085014013696)>']
[2025-10-15 13:21:47] 2025-10-15 11:21:42,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 13:21:47] 2025-10-15 11:21:42,645 | INFO     | [monitor] control thread has ended
[2025-10-15 13:21:47] 2025-10-15 11:21:47,237 | INFO     | all workflow threads have been joined
[2025-10-15 13:21:47] 2025-10-15 11:21:47,238 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 13:21:47] 2025-10-15 11:21:47,238 | INFO     | traces error code: 0
[2025-10-15 13:21:47] 2025-10-15 11:21:47,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 13:21:47] 2025-10-15 11:21:47,303 [wrapper] ==== pilot stdout END ====
[2025-10-15 13:21:47] 2025-10-15 11:21:47,307 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 13:21:47] 2025-10-15 11:21:47,310 [wrapper] pilotpid: 277934
[2025-10-15 13:21:47] 2025-10-15 11:21:47,314 [wrapper] Pilot exit status: 0
[2025-10-15 13:21:47] 2025-10-15 11:21:47,325 [wrapper] pandaids: 6833167428
[2025-10-15 13:21:47] 2025-10-15 11:21:47,345 [wrapper] cleanup supervisor_pilot  293937 277935
[2025-10-15 13:21:47] 2025-10-15 11:21:47,348 [wrapper] Test setup, not cleaning
[2025-10-15 13:21:47] 2025-10-15 11:21:47,352 [wrapper] apfmon messages muted
[2025-10-15 13:21:47] 2025-10-15 11:21:47,355 [wrapper] ==== wrapper stdout END ====
[2025-10-15 13:21:47] 2025-10-15 11:21:47,358 [wrapper] ==== wrapper stderr END ====
[2025-10-15 13:21:47]  *** Error codes and diagnostics ***
[2025-10-15 13:21:47]     "exeErrorCode": 0,
[2025-10-15 13:21:47]     "exeErrorDiag": "",
[2025-10-15 13:21:47]     "pilotErrorCode": 0,
[2025-10-15 13:21:47]     "pilotErrorDiag": "",
[2025-10-15 13:21:47]  *** Listing of results directory ***
[2025-10-15 13:21:47] total 396732
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc    552446 Oct  7 05:46 pilot3.tar.gz
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc      5112 Oct  7 06:14 queuedata.json
[2025-10-15 13:21:47] -rwx------ 1 boinc boinc     36292 Oct  7 06:15 runpilot2-wrapper.sh
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc       100 Oct 15 12:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 13:21:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 15 12:16 run_atlas
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc       105 Oct 15 12:16 job.xml
[2025-10-15 13:21:47] -rw-r--r-- 2 boinc boinc 215796001 Oct 15 12:16 EVNT.46376901._004746.pool.root.1
[2025-10-15 13:21:47] -rw-r--r-- 2 boinc boinc    565599 Oct 15 12:16 input.tar.gz
[2025-10-15 13:21:47] -rw-r--r-- 2 boinc boinc     15120 Oct 15 12:16 start_atlas.sh
[2025-10-15 13:21:47] drwxrwx--x 2 boinc boinc      4096 Oct 15 12:16 shared
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc         0 Oct 15 12:16 boinc_setup_complete
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc      6368 Oct 15 12:16 init_data.xml
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc         0 Oct 15 12:16 boinc_lockfile
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc      2521 Oct 15 12:16 pandaJob.out
[2025-10-15 13:21:47] -rw------- 1 boinc boinc    973999 Oct 15 12:16 agis_schedconf.cvmfs.json
[2025-10-15 13:21:47] -rw------- 1 boinc boinc   1560740 Oct 15 12:16 agis_ddmendpoints.agis.ALL.json
[2025-10-15 13:21:47] drwx------ 4 boinc boinc      4096 Oct 15 12:16 pilot3
[2025-10-15 13:21:47] -rw------- 1 boinc boinc 184901005 Oct 15 13:20 HITS.46376905._127706.pool.root.1
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc       529 Oct 15 13:20 boinc_task_state.xml
[2025-10-15 13:21:47] -rw------- 1 boinc boinc      1025 Oct 15 13:20 memory_monitor_summary.json
[2025-10-15 13:21:47] -rw------- 1 boinc boinc    263109 Oct 15 13:20 log.46376905._127706.job.log.tgz.1
[2025-10-15 13:21:47] -rw------- 1 boinc boinc      7766 Oct 15 13:20 heartbeat.json
[2025-10-15 13:21:47] -rw------- 1 boinc boinc        95 Oct 15 13:21 pilot_heartbeat.json
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc        27 Oct 15 13:21 wrapper_checkpoint.txt
[2025-10-15 13:21:47] -rw------- 1 boinc boinc      4823 Oct 15 13:21 pilotlog.txt
[2025-10-15 13:21:47] -rw------- 1 boinc boinc    573723 Oct 15 13:21 log.46376905._127706.job.log.1
[2025-10-15 13:21:47] -rw------- 1 boinc boinc       357 Oct 15 13:21 output.list
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc       620 Oct 15 13:21 runtime_log
[2025-10-15 13:21:47] -rw------- 1 boinc boinc    860160 Oct 15 13:21 result.tar.gz
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc      8777 Oct 15 13:21 runtime_log.err
[2025-10-15 13:21:47] -rw------- 1 boinc boinc       658 Oct 15 13:21 JzFLDmdHEQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5wKMDm2sz4Tm.diag
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc      8192 Oct 15 13:21 boinc_mmap_file
[2025-10-15 13:21:47] -rw-r--r-- 1 boinc boinc     10051 Oct 15 13:21 stderr.txt
[2025-10-15 13:21:47] HITS file was successfully produced:
[2025-10-15 13:21:47] -rw------- 1 boinc boinc 184901005 Oct 15 13:20 shared/HITS.pool.root.1
[2025-10-15 13:21:47]  *** Contents of shared directory: ***
[2025-10-15 13:21:47] total 392728
[2025-10-15 13:21:47] -rw-r--r-- 2 boinc boinc 215796001 Oct 15 12:16 ATLAS.root_0
[2025-10-15 13:21:47] -rw-r--r-- 2 boinc boinc    565599 Oct 15 12:16 input.tar.gz
[2025-10-15 13:21:47] -rw-r--r-- 2 boinc boinc     15120 Oct 15 12:16 start_atlas.sh
[2025-10-15 13:21:47] -rw------- 1 boinc boinc 184901005 Oct 15 13:20 HITS.pool.root.1
[2025-10-15 13:21:47] -rw------- 1 boinc boinc    860160 Oct 15 13:21 result.tar.gz
13:21:48 (274142): run_atlas exited; CPU time 14242.518798
13:21:48 (274142): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN