Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:44:20 (1792879): wrapper (7.7.26015): starting
03:44:20 (1792879): wrapper: running run_atlas (--nthreads 12)
[2025-10-15 03:44:20] Arguments: --nthreads 12
[2025-10-15 03:44:20] Threads: 12
[2025-10-15 03:44:20] Checking for CVMFS
[2025-10-15 03:44:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 03:44:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 03:44:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 03:44:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 03:44:22] 2.13.2.0 403710 15297 208404 151726 0 323 20884209 32935936 18542 16776704 0 40441644 99.659 35135938 28631 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-15 03:44:22] CVMFS is ok
[2025-10-15 03:44:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-15 03:44:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-15 03:44:22] Further information can be found at the LHC@home message board.
[2025-10-15 03:44:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 03:44:22] Checking for apptainer binary...
[2025-10-15 03:44:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 03:44:22] Running /usr/bin/apptainer --version
[2025-10-15 03:44:22] apptainer version 1.4.3-1.el9
[2025-10-15 03:44:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 03:44:23] c-4-40.aglt2.org
[2025-10-15 03:44:23] apptainer works
[2025-10-15 03:44:23] Set ATHENA_PROC_NUMBER=12
[2025-10-15 03:44:23] Set ATHENA_CORE_NUMBER=12
[2025-10-15 03:44:23] Starting ATLAS job with PandaID=6845499648
[2025-10-15 03:44:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:48:45 (3831471): wrapper (7.7.26015): starting
08:48:45 (3831471): wrapper: running run_atlas (--nthreads 8)
[2025-10-15 08:48:45] Arguments: --nthreads 8
[2025-10-15 08:48:45] Threads: 8
[2025-10-15 08:48:45] This job has been restarted, cleaning up previous attempt
[2025-10-15 08:48:45] Checking for CVMFS
[2025-10-15 08:48:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 08:48:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 08:48:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 08:48:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 08:48:45] 2.13.2.0 403710 15602 209488 151734 0 224 25788569 32935936 17809 16776704 0 43459370 99.666 36689950 28769 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-15 08:48:45] CVMFS is ok
[2025-10-15 08:48:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-15 08:48:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-15 08:48:45] Further information can be found at the LHC@home message board.
[2025-10-15 08:48:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 08:48:45] Checking for apptainer binary...
[2025-10-15 08:48:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 08:48:45] Running /usr/bin/apptainer --version
[2025-10-15 08:48:45] apptainer version 1.4.3-1.el9
[2025-10-15 08:48:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 08:48:46] c-4-40.aglt2.org
[2025-10-15 08:48:46] apptainer works
[2025-10-15 08:48:46] Set ATHENA_PROC_NUMBER=8
[2025-10-15 08:48:46] Set ATHENA_CORE_NUMBER=8
[2025-10-15 08:48:46] Starting ATLAS job with PandaID=6845499648
[2025-10-15 08:48:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 16:01:58]  *** The last 200 lines of the pilot log: ***
[2025-10-15 16:01:58] 2025-10-15 20:01:08,437 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-15 16:01:58] 2025-10-15 20:01:08,437 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-15 16:01:58] 2025-10-15 20:01:08,462 | INFO     | fitting pss+swap vs Time
[2025-10-15 16:01:58] 2025-10-15 20:01:08,463 | INFO     | sum of square deviations: 23635612996.431553
[2025-10-15 16:01:58] 2025-10-15 20:01:08,477 | INFO     | sum of deviations: 87140812237.04723
[2025-10-15 16:01:58] 2025-10-15 20:01:08,485 | INFO     | mean x: 1760545500.82783
[2025-10-15 16:01:58] 2025-10-15 20:01:08,485 | INFO     | mean y: 2134983.8773584906
[2025-10-15 16:01:58] 2025-10-15 20:01:08,485 | INFO     | -- intersect: -6488721206.126197
[2025-10-15 16:01:58] 2025-10-15 20:01:08,486 | INFO     | intersect: -6488721206.126197
[2025-10-15 16:01:58] 2025-10-15 20:01:08,486 | INFO     | chi2: 2.8343011756160683
[2025-10-15 16:01:58] 2025-10-15 20:01:08,487 | INFO     | sum of square deviations: 22809269846.54892
[2025-10-15 16:01:58] 2025-10-15 20:01:08,508 | INFO     | sum of deviations: 115358139479.2674
[2025-10-15 16:01:58] 2025-10-15 20:01:08,508 | INFO     | mean x: 1760545348.3293557
[2025-10-15 16:01:58] 2025-10-15 20:01:08,509 | INFO     | mean y: 2140147.3603818617
[2025-10-15 16:01:58] 2025-10-15 20:01:08,509 | INFO     | -- intersect: -8901837806.273306
[2025-10-15 16:01:58] 2025-10-15 20:01:08,509 | INFO     | intersect: -8901837806.273306
[2025-10-15 16:01:58] 2025-10-15 20:01:08,510 | INFO     | chi2: 1.9447258934152711
[2025-10-15 16:01:58] 2025-10-15 20:01:08,510 | INFO     | current chi2=1.9447258934152711 (change=31.386053460159808 %)
[2025-10-15 16:01:58] 2025-10-15 20:01:08,510 | INFO     | sum of square deviations: 22002440993.500042
[2025-10-15 16:01:58] 2025-10-15 20:01:08,523 | INFO     | sum of deviations: 115129851855.50003
[2025-10-15 16:01:58] 2025-10-15 20:01:08,524 | INFO     | mean x: 1760545195.8333333
[2025-10-15 16:01:58] 2025-10-15 20:01:08,524 | INFO     | mean y: 2140107.384057971
[2025-10-15 16:01:58] 2025-10-15 20:01:08,524 | INFO     | -- intersect: -9210079011.443848
[2025-10-15 16:01:58] 2025-10-15 20:01:08,524 | INFO     | intersect: -9210079011.443848
[2025-10-15 16:01:58] 2025-10-15 20:01:08,533 | INFO     | chi2: 1.9409780621985755
[2025-10-15 16:01:58] 2025-10-15 20:01:08,533 | INFO     | current chi2=1.9409780621985755 (change=0.1927177104694075 %)
[2025-10-15 16:01:58] 2025-10-15 20:01:08,534 | INFO     | right removable region: 413
[2025-10-15 16:01:58] 2025-10-15 20:01:08,534 | INFO     | sum of square deviations: 22809210920.88759
[2025-10-15 16:01:58] 2025-10-15 20:01:08,549 | INFO     | sum of deviations: 16782926710.527473
[2025-10-15 16:01:58] 2025-10-15 20:01:08,549 | INFO     | mean x: 1760545653.3317423
[2025-10-15 16:01:58] 2025-10-15 20:01:08,549 | INFO     | mean y: 2147925.291169451
[2025-10-15 16:01:58] 2025-10-15 20:01:08,550 | INFO     | -- intersect: -1293254566.8374166
[2025-10-15 16:01:58] 2025-10-15 20:01:08,550 | INFO     | intersect: -1293254566.8374166
[2025-10-15 16:01:58] 2025-10-15 20:01:08,550 | INFO     | chi2: 1.1619766554068638
[2025-10-15 16:01:58] 2025-10-15 20:01:08,550 | INFO     | current chi2=1.1619766554068638 (change=59.00306342164592 %)
[2025-10-15 16:01:58] 2025-10-15 20:01:08,551 | INFO     | sum of square deviations: 22002297582.830856
[2025-10-15 16:01:58] 2025-10-15 20:01:08,566 | INFO     | sum of deviations: 16159165137.879261
[2025-10-15 16:01:58] 2025-10-15 20:01:08,567 | INFO     | mean x: 1760545805.835749
[2025-10-15 16:01:58] 2025-10-15 20:01:08,567 | INFO     | mean y: 2148031.95410628
[2025-10-15 16:01:58] 2025-10-15 20:01:08,567 | INFO     | -- intersect: -1290851042.4471176
[2025-10-15 16:01:58] 2025-10-15 20:01:08,567 | INFO     | intersect: -1290851042.4471176
[2025-10-15 16:01:58] 2025-10-15 20:01:08,568 | INFO     | chi2: 1.134527475497805
[2025-10-15 16:01:58] 2025-10-15 20:01:08,568 | INFO     | current chi2=1.134527475497805 (change=2.3622832508151848 %)
[2025-10-15 16:01:58] 2025-10-15 20:01:08,568 | INFO     | left removable region: 20
[2025-10-15 16:01:58] 2025-10-15 20:01:08,569 | INFO     | sum of square deviations: 18821017496.62603
[2025-10-15 16:01:58] 2025-10-15 20:01:08,581 | INFO     | sum of deviations: 55742745602.221375
[2025-10-15 16:01:58] 2025-10-15 20:01:08,582 | INFO     | mean x: 1760545775.3435113
[2025-10-15 16:01:58] 2025-10-15 20:01:08,587 | INFO     | mean y: 2151509.6946564885
[2025-10-15 16:01:58] 2025-10-15 20:01:08,587 | INFO     | -- intersect: -5212107246.168659
[2025-10-15 16:01:58] 2025-10-15 20:01:08,587 | INFO     | intersect: -5212107246.168659
[2025-10-15 16:01:58] 2025-10-15 20:01:08,588 | INFO     | chi2: 0.19517567322264034
[2025-10-15 16:01:58] 2025-10-15 20:01:08,588 | INFO     | -- intersect: -5212107246.168659
[2025-10-15 16:01:58] 2025-10-15 20:01:08,588 | INFO     | current memory leak: 2.96 B/s (using 393 data points, chi2=0.20)
[2025-10-15 16:01:58] 2025-10-15 20:01:08,589 | INFO     | could have reported an average CPU frequency of 2600 MHz (18 samples)
[2025-10-15 16:01:58] 2025-10-15 20:01:08,590 | INFO     | ..............................
[2025-10-15 16:01:58] 2025-10-15 20:01:08,590 | INFO     | . Timing measurements:
[2025-10-15 16:01:58] 2025-10-15 20:01:08,590 | INFO     | . get job = 0 s
[2025-10-15 16:01:58] 2025-10-15 20:01:08,590 | INFO     | . initial setup = 3 s
[2025-10-15 16:01:58] 2025-10-15 20:01:08,590 | INFO     | . payload setup = 11 s
[2025-10-15 16:01:58] 2025-10-15 20:01:08,590 | INFO     | . stage-in = 0 s
[2025-10-15 16:01:58] 2025-10-15 20:01:08,590 | INFO     | . payload execution = 25853 s
[2025-10-15 16:01:58] 2025-10-15 20:01:08,590 | INFO     | . stage-out = 3 s
[2025-10-15 16:01:58] 2025-10-15 20:01:08,590 | INFO     | . log creation = 0 s
[2025-10-15 16:01:58] 2025-10-15 20:01:08,591 | INFO     | ..............................
[2025-10-15 16:01:58] 2025-10-15 20:01:08,835 | INFO     | 
[2025-10-15 16:01:58] 2025-10-15 20:01:08,836 | INFO     | job summary report
[2025-10-15 16:01:58] 2025-10-15 20:01:08,836 | INFO     | --------------------------------------------------
[2025-10-15 16:01:58] 2025-10-15 20:01:08,836 | INFO     | PanDA job id: 6845499648
[2025-10-15 16:01:58] 2025-10-15 20:01:08,836 | INFO     | task id: 46776533
[2025-10-15 16:01:58] 2025-10-15 20:01:08,836 | INFO     | errors: (none)
[2025-10-15 16:01:58] 2025-10-15 20:01:08,836 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-15 16:01:58] 2025-10-15 20:01:08,836 | INFO     | pilot state: finished 
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | transexitcode: 0
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | exeerrorcode: 0
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | exeerrordiag: 
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | exitcode: 0
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | exitmsg: OK
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | cpuconsumptiontime: 55577 s
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | nevents: 400
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | neventsw: 0
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | pid: 3867342
[2025-10-15 16:01:58] 2025-10-15 20:01:08,837 | INFO     | pgrp: 3867342
[2025-10-15 16:01:58] 2025-10-15 20:01:08,838 | INFO     | corecount: 8
[2025-10-15 16:01:58] 2025-10-15 20:01:08,838 | INFO     | event service: False
[2025-10-15 16:01:58] 2025-10-15 20:01:08,838 | INFO     | sizes: {0: 2348752, 1: 2348951, 2: 2348979, 13: 2349297, 24: 2349297, 25868: 2385549, 25873: 2394547, 25875: 2394603, 25890: 2394797}
[2025-10-15 16:01:58] 2025-10-15 20:01:08,838 | INFO     | --------------------------------------------------
[2025-10-15 16:01:58] 2025-10-15 20:01:08,838 | INFO     | 
[2025-10-15 16:01:58] 2025-10-15 20:01:08,838 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-15 16:01:58] 2025-10-15 20:01:08,892 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,892 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,892 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,892 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,893 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,893 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,893 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,893 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,894 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,895 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-15 16:01:58] 2025-10-15 20:01:08,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,895 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-15 16:01:58] 2025-10-15 20:01:08,895 | INFO     | job 6845499648 has completed (purged errors)
[2025-10-15 16:01:58] 2025-10-15 20:01:08,902 | INFO     | overall cleanup function is called
[2025-10-15 16:01:58] 2025-10-15 20:01:09,960 | INFO     | --- collectZombieJob: --- 10, [3867342]
[2025-10-15 16:01:58] 2025-10-15 20:01:09,960 | INFO     | zombie collector waiting for pid 3867342
[2025-10-15 16:01:58] 2025-10-15 20:01:09,960 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-15 16:01:58] 2025-10-15 20:01:09,960 | INFO     | collected zombie processes
[2025-10-15 16:01:58] 2025-10-15 20:01:09,961 | INFO     | will attempt to kill all subprocesses of pid=3867342
[2025-10-15 16:01:58] 2025-10-15 20:01:11,493 | INFO     | process IDs to be killed: [3867342] (in reverse order)
[2025-10-15 16:01:58] 2025-10-15 20:01:11,928 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 16:01:58] 2025-10-15 20:01:11,928 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 16:01:58] 2025-10-15 20:01:11,954 | INFO     | did not find any defunct processes belonging to 3867342
[2025-10-15 16:01:58] 2025-10-15 20:01:11,975 | INFO     | did not find any defunct processes belonging to 3867342
[2025-10-15 16:01:58] 2025-10-15 20:01:11,975 | INFO     | ready for new job
[2025-10-15 16:01:58] 2025-10-15 20:01:11,976 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 16:01:58] 2025-10-15 20:01:11,979 | INFO     | ***************************************
[2025-10-15 16:01:58] 2025-10-15 20:01:11,980 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-15 16:01:58] 2025-10-15 20:01:11,980 | INFO     | ***************************************
[2025-10-15 16:01:58] 2025-10-15 20:01:11,980 | INFO     | 
[2025-10-15 16:01:58] 2025-10-15 20:01:11,998 | INFO     | architecture information:
[2025-10-15 16:01:58] 2025-10-15 20:01:11,998 | INFO     | executing command: cat /etc/os-release
[2025-10-15 16:01:58] 2025-10-15 20:01:12,069 | INFO     | cat /etc/os-release:
[2025-10-15 16:01:58] NAME="CentOS Linux"
[2025-10-15 16:01:58] VERSION="7 (Core)"
[2025-10-15 16:01:58] ID="centos"
[2025-10-15 16:01:58] ID_LIKE="rhel fedora"
[2025-10-15 16:01:58] VERSION_ID="7"
[2025-10-15 16:01:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 16:01:58] ANSI_COLOR="0;31"
[2025-10-15 16:01:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 16:01:58] HOME_URL="https://www.centos.org/"
[2025-10-15 16:01:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 16:01:58] 
[2025-10-15 16:01:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 16:01:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 16:01:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 16:01:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 16:01:58] 
[2025-10-15 16:01:58] 2025-10-15 20:01:12,070 | INFO     | ***************************************
[2025-10-15 16:01:58] 2025-10-15 20:01:12,573 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-15 16:01:58] 2025-10-15 20:01:12,680 | INFO     | sufficient remaining disk space (75869716480 B)
[2025-10-15 16:01:58] 2025-10-15 20:01:12,681 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 16:01:58] 2025-10-15 20:01:12,681 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 16:01:58] 2025-10-15 20:01:12,681 | INFO     | update_server=False
[2025-10-15 16:01:58] 2025-10-15 20:01:12,681 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 16:01:58] 2025-10-15 20:01:12,693 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 16:01:58] 2025-10-15 20:01:12,694 | INFO     | aborting loop
[2025-10-15 16:01:58] 2025-10-15 20:01:12,832 | INFO     | all job control threads have been joined
[2025-10-15 16:01:58] 2025-10-15 20:01:13,114 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 16:01:58] 2025-10-15 20:01:13,650 | INFO     | all payload control threads have been joined
[2025-10-15 16:01:58] 2025-10-15 20:01:13,695 | INFO     | [job] retrieve thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:13,700 | INFO     | [job] job monitor thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:13,802 | INFO     | all data control threads have been joined
[2025-10-15 16:01:58] 2025-10-15 20:01:13,847 | INFO     | [job] control thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:13,887 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 16:01:58] 2025-10-15 20:01:13,914 | INFO     | [job] validate thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:13,959 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:14,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 16:01:58] 2025-10-15 20:01:14,641 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:14,680 | INFO     | [payload] control thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:14,729 | INFO     | [payload] validate_post thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:14,751 | INFO     | [data] copytool_in thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:14,808 | INFO     | [data] control thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:14,893 | INFO     | [job] queue monitor thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:14,919 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:14,964 | INFO     | [payload] failed_post thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:15,146 | INFO     | [data] copytool_out thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:18,267 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:22,958 | INFO     | job.realtimelogging is not enabled
[2025-10-15 16:01:58] 2025-10-15 20:01:23,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 16:01:58] 2025-10-15 20:01:43,535 | INFO     | PID=3841736 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-15 16:01:58] 2025-10-15 20:01:43,535 | INFO     | .. there are 30 such processes running
[2025-10-15 16:01:58] 2025-10-15 20:01:43,536 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 16:01:58] 2025-10-15 20:01:43,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 16:01:58] 2025-10-15 20:01:43,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 16:01:58] 2025-10-15 20:01:52,059 | INFO     | [monitor] cgroup control has ended
[2025-10-15 16:01:58] 2025-10-15 20:01:52,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140179328882496)>', '<ExcThread(monitor, started 140178488268544)>']
[2025-10-15 16:01:58] 2025-10-15 20:01:52,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 16:01:58] 2025-10-15 20:01:52,628 | INFO     | [monitor] control thread has ended
[2025-10-15 16:01:58] 2025-10-15 20:01:57,246 | INFO     | all workflow threads have been joined
[2025-10-15 16:01:58] 2025-10-15 20:01:57,246 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 16:01:58] 2025-10-15 20:01:57,247 | INFO     | traces error code: 0
[2025-10-15 16:01:58] 2025-10-15 20:01:57,247 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 16:01:58] 2025-10-15 20:01:57,886 [wrapper] ==== pilot stdout END ====
[2025-10-15 16:01:58] 2025-10-15 20:01:57,908 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 16:01:58] 2025-10-15 20:01:57,911 [wrapper] pilotpid: 3841736
[2025-10-15 16:01:58] 2025-10-15 20:01:57,914 [wrapper] Pilot exit status: 0
[2025-10-15 16:01:58] 2025-10-15 20:01:58,016 [wrapper] pandaids: 6845499648 6845499648
[2025-10-15 16:01:58] 2025-10-15 20:01:58,185 [wrapper] cleanup supervisor_pilot 2282534 3841737
[2025-10-15 16:01:58] 2025-10-15 20:01:58,190 [wrapper] Test setup, not cleaning
[2025-10-15 16:01:58] 2025-10-15 20:01:58,194 [wrapper] apfmon messages muted
[2025-10-15 16:01:58] 2025-10-15 20:01:58,198 [wrapper] ==== wrapper stdout END ====
[2025-10-15 16:01:58] 2025-10-15 20:01:58,201 [wrapper] ==== wrapper stderr END ====
[2025-10-15 16:01:58]  *** Error codes and diagnostics ***
[2025-10-15 16:01:58]     "exeErrorCode": 0,
[2025-10-15 16:01:58]     "exeErrorDiag": "",
[2025-10-15 16:01:58]     "pilotErrorCode": 0,
[2025-10-15 16:01:58]     "pilotErrorDiag": "",
[2025-10-15 16:01:58]  *** Listing of results directory ***
[2025-10-15 16:01:58] total 657648
[2025-10-15 16:01:58] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas      5112 Oct 15 03:40 queuedata.json
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas    557409 Oct 15 03:40 pilot3.tar.gz
[2025-10-15 16:01:58] -rwx------. 1 boincer umatlas     36292 Oct 15 03:40 runpilot2-wrapper.sh
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas       100 Oct 15 03:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 16:01:58] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 15 03:44 run_atlas
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas       105 Oct 15 03:44 job.xml
[2025-10-15 16:01:58] -rw-r--r--. 3 boincer umatlas 229473128 Oct 15 03:44 EVNT.46776529._000023.pool.root.1
[2025-10-15 16:01:58] -rw-r--r--. 3 boincer umatlas 229473128 Oct 15 03:44 ATLAS.root_0
[2025-10-15 16:01:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 15 03:44 start_atlas.sh
[2025-10-15 16:01:58] drwxrwx--x. 2 boincer umatlas      4096 Oct 15 03:44 shared
[2025-10-15 16:01:58] -rw-r--r--. 2 boincer umatlas    569671 Oct 15 03:44 input.tar.gz
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas         0 Oct 15 03:44 boinc_lockfile
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas      2558 Oct 15 08:48 pandaJob.out
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas    974016 Oct 15 08:49 agis_schedconf.cvmfs.json
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas 202848541 Oct 15 15:59 HITS.46776533._000460.pool.root.1
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas       531 Oct 15 15:59 boinc_task_state.xml
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas      1067 Oct 15 16:00 memory_monitor_summary.json
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas   1560740 Oct 15 16:00 agis_ddmendpoints.agis.ALL.json
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas    609835 Oct 15 16:00 log.46776533._000460.job.log.tgz.1
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas      7837 Oct 15 16:01 heartbeat.json
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas      6659 Oct 15 16:01 init_data.xml
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas        96 Oct 15 16:01 pilot_heartbeat.json
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas        28 Oct 15 16:01 wrapper_checkpoint.txt
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas      8192 Oct 15 16:01 boinc_mmap_file
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas      4896 Oct 15 16:01 pilotlog.txt
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas   3258135 Oct 15 16:01 log.46776533._000460.job.log.1
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas       357 Oct 15 16:01 output.list
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas       620 Oct 15 16:01 runtime_log
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas   3891200 Oct 15 16:01 result.tar.gz
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas       785 Oct 15 16:01 YsDODmvIBT8n9Rq4apOajLDm4fhM0noT9bVof3QYDm3pVMDmBRX1vm.diag
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas      8779 Oct 15 16:01 runtime_log.err
[2025-10-15 16:01:58] -rw-r--r--. 1 boincer umatlas     23163 Oct 15 16:01 stderr.txt
[2025-10-15 16:01:58] HITS file was successfully produced:
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas 202848541 Oct 15 15:59 shared/HITS.pool.root.1
[2025-10-15 16:01:58]  *** Contents of shared directory: ***
[2025-10-15 16:01:58] total 426572
[2025-10-15 16:01:58] -rw-r--r--. 3 boincer umatlas 229473128 Oct 15 03:44 ATLAS.root_0
[2025-10-15 16:01:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 15 03:44 start_atlas.sh
[2025-10-15 16:01:58] -rw-r--r--. 2 boincer umatlas    569671 Oct 15 03:44 input.tar.gz
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas 202848541 Oct 15 15:59 HITS.pool.root.1
[2025-10-15 16:01:58] -rw-------. 1 boincer umatlas   3891200 Oct 15 16:01 result.tar.gz
16:02:20 (3831471): run_atlas exited; CPU time 56676.666826
16:02:20 (3831471): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN