Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:39:42 (26421): wrapper (7.7.26015): starting
18:39:42 (26421): wrapper: running run_atlas (--nthreads 12)
[2025-10-14 18:39:42] Arguments: --nthreads 12
[2025-10-14 18:39:42] Threads: 12
[2025-10-14 18:39:42] Checking for CVMFS
[2025-10-14 18:39:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 18:39:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 18:39:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 18:39:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 18:39:42] 2.11.2.0 2984 226327 98980 151713 2 1 19076144 20275200 1 130560 1 111367254 99.984 13492969 12708 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-14 18:39:42] CVMFS is ok
[2025-10-14 18:39:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 18:39:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 18:39:42] Further information can be found at the LHC@home message board.
[2025-10-14 18:39:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 18:39:42] Checking for apptainer binary...
[2025-10-14 18:39:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 18:39:42] Running /usr/bin/apptainer --version
[2025-10-14 18:39:43] apptainer version 1.3.2-1.el7
[2025-10-14 18:39:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 18:39:44] c-205-26.aglt2.org
[2025-10-14 18:39:44] apptainer works
[2025-10-14 18:39:44] Set ATHENA_PROC_NUMBER=12
[2025-10-14 18:39:44] Set ATHENA_CORE_NUMBER=12
[2025-10-14 18:39:44] Starting ATLAS job with PandaID=6832862873
[2025-10-14 18:39:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 19:46:11]  *** The last 200 lines of the pilot log: ***
[2025-10-14 19:46:11]  status_code=0
[2025-10-14 19:46:11]  storage_token=
[2025-10-14 19:46:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6832862873/log.46376905._116913.job.log.tgz.1
[2025-10-14 19:46:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/3a/log.46376905._116913.job.log.tgz.1
[2025-10-14 19:46:11]  workdir=None
[2025-10-14 19:46:11] ]
[2025-10-14 19:46:11] 2025-10-14 23:45:27,640 | INFO     | transferring file log.46376905._116913.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6832862873/log.46376905._116913.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-14 19:46:11] 2025-10-14 23:45:27,641 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6832862873/log.46376905._116913.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._116913.job
[2025-10-14 19:46:11] 2025-10-14 23:45:27,658 | INFO     | adding to output.list: log.46376905._116913.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/3a/log.46376905._116913.job.log.tg
[2025-10-14 19:46:11] 2025-10-14 23:45:27,659 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-14 19:46:11] 2025-10-14 23:45:27,659 | INFO     | summary of transferred files:
[2025-10-14 19:46:11] 2025-10-14 23:45:27,659 | INFO     |  -- lfn=log.46376905._116913.job.log.tgz.1, status_code=0, status=transferred
[2025-10-14 19:46:11] 2025-10-14 23:45:27,659 | INFO     | stage-out finished correctly
[2025-10-14 19:46:11] 2025-10-14 23:45:29,428 | INFO     | monitor loop #295: job 0:6832862873 is in state 'finished'
[2025-10-14 19:46:11] 2025-10-14 23:45:29,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 19:46:11] 2025-10-14 23:45:29,580 | INFO     | time since job start (3929s) is within the limit (172800.0s)
[2025-10-14 19:46:11] 2025-10-14 23:45:30,480 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 19:46:11] 2025-10-14 23:45:31,585 | INFO     | time since job start (3931s) is within the limit (172800.0s)
[2025-10-14 19:46:11] 2025-10-14 23:45:31,931 | INFO     | monitor loop #296: job 0:6832862873 is in state 'finished'
[2025-10-14 19:46:11] 2025-10-14 23:45:31,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 19:46:11] 2025-10-14 23:45:33,447 | INFO     | job 6832862873 has state=finished
[2025-10-14 19:46:11] 2025-10-14 23:45:33,447 | INFO     | preparing for final server update for job 6832862873 in state='finished'
[2025-10-14 19:46:11] 2025-10-14 23:45:33,448 | INFO     | this job has now completed (state=finished)
[2025-10-14 19:46:11] 2025-10-14 23:45:33,448 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 19:46:11] 2025-10-14 23:45:33,448 | INFO     | log transfer has been attempted: DONE
[2025-10-14 19:46:11] 2025-10-14 23:45:33,448 | INFO     | job 6832862873 has finished - writing final server update
[2025-10-14 19:46:11] 2025-10-14 23:45:33,449 | INFO     | total number of processed events: 400 (read)
[2025-10-14 19:46:11] 2025-10-14 23:45:33,451 | INFO     | executing command: lscpu
[2025-10-14 19:46:11] 2025-10-14 23:45:33,478 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 19:46:11] 2025-10-14 23:45:33,591 | INFO     | time since job start (3933s) is within the limit (172800.0s)
[2025-10-14 19:46:11] 2025-10-14 23:45:34,435 | INFO     | monitor loop #297: job 0:6832862873 is in state 'finished'
[2025-10-14 19:46:11] 2025-10-14 23:45:34,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 19:46:11] 2025-10-14 23:45:35,597 | INFO     | time since job start (3935s) is within the limit (172800.0s)
[2025-10-14 19:46:11] 2025-10-14 23:45:36,938 | INFO     | monitor loop #298: job 0:6832862873 is in state 'finished'
[2025-10-14 19:46:11] 2025-10-14 23:45:36,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 19:46:11] 2025-10-14 23:45:37,583 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-14 19:46:11] 2025-10-14 23:45:37,587 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.5
[2025-10-14 19:46:11] 2025-10-14 23:45:37,589 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832862873/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 19:46:11] 2025-10-14 23:45:37,590 | INFO     | extracted standard info from prmon json
[2025-10-14 19:46:11] 2025-10-14 23:45:37,591 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 19:46:11] 2025-10-14 23:45:37,591 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 19:46:11] 2025-10-14 23:45:37,591 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 19:46:11] 2025-10-14 23:45:37,591 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 19:46:11] 2025-10-14 23:45:37,593 | INFO     | fitting pss+swap vs Time
[2025-10-14 19:46:11] 2025-10-14 23:45:37,594 | INFO     | sum of square deviations: 57407588.0
[2025-10-14 19:46:11] 2025-10-14 23:45:37,594 | INFO     | sum of deviations: -5544710045.999999
[2025-10-14 19:46:11] 2025-10-14 23:45:37,594 | INFO     | mean x: 1760483642.0
[2025-10-14 19:46:11] 2025-10-14 23:45:37,594 | INFO     | mean y: 2816577.1754385964
[2025-10-14 19:46:11] 2025-10-14 23:45:37,595 | INFO     | -- intersect: 170039072683.52963
[2025-10-14 19:46:11] 2025-10-14 23:45:37,595 | INFO     | intersect: 170039072683.52963
[2025-10-14 19:46:11] 2025-10-14 23:45:37,595 | INFO     | chi2: 0.08648015439494591
[2025-10-14 19:46:11] 2025-10-14 23:45:37,595 | INFO     | -- intersect: 170039072683.52963
[2025-10-14 19:46:11] 2025-10-14 23:45:37,595 | INFO     | current memory leak: -96.58 B/s (using 57 data points, chi2=0.09)
[2025-10-14 19:46:11] 2025-10-14 23:45:37,595 | INFO     | could have reported an average CPU frequency of 2050 MHz (6 samples)
[2025-10-14 19:46:11] 2025-10-14 23:45:37,596 | INFO     | ..............................
[2025-10-14 19:46:11] 2025-10-14 23:45:37,596 | INFO     | . Timing measurements:
[2025-10-14 19:46:11] 2025-10-14 23:45:37,596 | INFO     | . get job = 0 s
[2025-10-14 19:46:11] 2025-10-14 23:45:37,596 | INFO     | . initial setup = 2 s
[2025-10-14 19:46:11] 2025-10-14 23:45:37,596 | INFO     | . payload setup = 7 s
[2025-10-14 19:46:11] 2025-10-14 23:45:37,596 | INFO     | . stage-in = 0 s
[2025-10-14 19:46:11] 2025-10-14 23:45:37,596 | INFO     | . payload execution = 3899 s
[2025-10-14 19:46:11] 2025-10-14 23:45:37,596 | INFO     | . stage-out = 0 s
[2025-10-14 19:46:11] 2025-10-14 23:45:37,596 | INFO     | . log creation = 0 s
[2025-10-14 19:46:11] 2025-10-14 23:45:37,597 | INFO     | ..............................
[2025-10-14 19:46:11] 2025-10-14 23:45:37,607 | INFO     | time since job start (3937s) is within the limit (172800.0s)
[2025-10-14 19:46:11] 2025-10-14 23:45:38,068 | INFO     | 
[2025-10-14 19:46:11] 2025-10-14 23:45:38,068 | INFO     | job summary report
[2025-10-14 19:46:11] 2025-10-14 23:45:38,069 | INFO     | --------------------------------------------------
[2025-10-14 19:46:11] 2025-10-14 23:45:38,069 | INFO     | PanDA job id: 6832862873
[2025-10-14 19:46:11] 2025-10-14 23:45:38,069 | INFO     | task id: 46376905
[2025-10-14 19:46:11] 2025-10-14 23:45:38,069 | INFO     | errors: (none)
[2025-10-14 19:46:11] 2025-10-14 23:45:38,069 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 19:46:11] 2025-10-14 23:45:38,069 | INFO     | pilot state: finished 
[2025-10-14 19:46:11] 2025-10-14 23:45:38,070 | INFO     | transexitcode: 0
[2025-10-14 19:46:11] 2025-10-14 23:45:38,070 | INFO     | exeerrorcode: 0
[2025-10-14 19:46:11] 2025-10-14 23:45:38,070 | INFO     | exeerrordiag: 
[2025-10-14 19:46:11] 2025-10-14 23:45:38,070 | INFO     | exitcode: 0
[2025-10-14 19:46:11] 2025-10-14 23:45:38,070 | INFO     | exitmsg: OK
[2025-10-14 19:46:11] 2025-10-14 23:45:38,070 | INFO     | cpuconsumptiontime: 41722 s
[2025-10-14 19:46:11] 2025-10-14 23:45:38,071 | INFO     | nevents: 400
[2025-10-14 19:46:11] 2025-10-14 23:45:38,071 | INFO     | neventsw: 0
[2025-10-14 19:46:11] 2025-10-14 23:45:38,071 | INFO     | pid: 4309
[2025-10-14 19:46:11] 2025-10-14 23:45:38,071 | INFO     | pgrp: 4309
[2025-10-14 19:46:11] 2025-10-14 23:45:38,071 | INFO     | corecount: 12
[2025-10-14 19:46:11] 2025-10-14 23:45:38,071 | INFO     | event service: False
[2025-10-14 19:46:11] 2025-10-14 23:45:38,072 | INFO     | sizes: {0: 2348833, 5: 2349095, 11: 2349151, 3909: 2374937, 3910: 2374936, 3911: 2383990, 3914: 2384174, 3921: 2384368}
[2025-10-14 19:46:11] 2025-10-14 23:45:38,072 | INFO     | --------------------------------------------------
[2025-10-14 19:46:11] 2025-10-14 23:45:38,072 | INFO     | 
[2025-10-14 19:46:11] 2025-10-14 23:45:38,072 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-14 19:46:11] 2025-10-14 23:45:38,092 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,093 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,093 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,093 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,093 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,093 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,094 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,094 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,094 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,094 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,094 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,095 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,095 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 19:46:11] 2025-10-14 23:45:38,096 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,096 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 19:46:11] 2025-10-14 23:45:38,096 | INFO     | job 6832862873 has completed (purged errors)
[2025-10-14 19:46:11] 2025-10-14 23:45:38,096 | INFO     | overall cleanup function is called
[2025-10-14 19:46:11] 2025-10-14 23:45:39,104 | INFO     | --- collectZombieJob: --- 10, [4309]
[2025-10-14 19:46:11] 2025-10-14 23:45:39,104 | INFO     | zombie collector waiting for pid 4309
[2025-10-14 19:46:11] 2025-10-14 23:45:39,105 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 19:46:11] 2025-10-14 23:45:39,105 | INFO     | collected zombie processes
[2025-10-14 19:46:11] 2025-10-14 23:45:39,105 | INFO     | will attempt to kill all subprocesses of pid=4309
[2025-10-14 19:46:11] 2025-10-14 23:45:39,202 | INFO     | process IDs to be killed: [4309] (in reverse order)
[2025-10-14 19:46:11] 2025-10-14 23:45:39,252 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 19:46:11] 2025-10-14 23:45:39,252 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 19:46:11] 2025-10-14 23:45:39,256 | INFO     | did not find any defunct processes belonging to 4309
[2025-10-14 19:46:11] 2025-10-14 23:45:39,258 | INFO     | did not find any defunct processes belonging to 4309
[2025-10-14 19:46:11] 2025-10-14 23:45:39,258 | INFO     | ready for new job
[2025-10-14 19:46:11] 2025-10-14 23:45:39,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 19:46:11] 2025-10-14 23:45:39,260 | INFO     | ***************************************
[2025-10-14 19:46:11] 2025-10-14 23:45:39,260 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-14 19:46:11] 2025-10-14 23:45:39,260 | INFO     | ***************************************
[2025-10-14 19:46:11] 2025-10-14 23:45:39,260 | INFO     | 
[2025-10-14 19:46:11] 2025-10-14 23:45:39,261 | INFO     | architecture information:
[2025-10-14 19:46:11] 2025-10-14 23:45:39,261 | INFO     | executing command: cat /etc/os-release
[2025-10-14 19:46:11] 2025-10-14 23:45:39,275 | INFO     | cat /etc/os-release:
[2025-10-14 19:46:11] NAME="CentOS Linux"
[2025-10-14 19:46:11] VERSION="7 (Core)"
[2025-10-14 19:46:11] ID="centos"
[2025-10-14 19:46:11] ID_LIKE="rhel fedora"
[2025-10-14 19:46:11] VERSION_ID="7"
[2025-10-14 19:46:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 19:46:11] ANSI_COLOR="0;31"
[2025-10-14 19:46:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 19:46:11] HOME_URL="https://www.centos.org/"
[2025-10-14 19:46:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 19:46:11] 
[2025-10-14 19:46:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 19:46:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 19:46:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 19:46:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 19:46:11] 
[2025-10-14 19:46:11] 2025-10-14 23:45:39,275 | INFO     | ***************************************
[2025-10-14 19:46:11] 2025-10-14 23:45:39,778 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-14 19:46:11] 2025-10-14 23:45:39,794 | INFO     | sufficient remaining disk space (29390536704 B)
[2025-10-14 19:46:11] 2025-10-14 23:45:39,794 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 19:46:11] 2025-10-14 23:45:39,794 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 19:46:11] 2025-10-14 23:45:39,794 | INFO     | update_server=False
[2025-10-14 19:46:11] 2025-10-14 23:45:39,795 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 19:46:11] 2025-10-14 23:45:40,078 | INFO     | all payload control threads have been joined
[2025-10-14 19:46:11] 2025-10-14 23:45:40,442 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 19:46:11] 2025-10-14 23:45:40,443 | INFO     | aborting loop
[2025-10-14 19:46:11] 2025-10-14 23:45:40,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 19:46:11] 2025-10-14 23:45:40,800 | INFO     | [job] retrieve thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:40,850 | INFO     | all data control threads have been joined
[2025-10-14 19:46:11] 2025-10-14 23:45:40,921 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:41,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 19:46:11] 2025-10-14 23:45:41,080 | INFO     | [payload] control thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:41,096 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:41,146 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:41,176 | INFO     | all job control threads have been joined
[2025-10-14 19:46:11] 2025-10-14 23:45:41,448 | INFO     | [job] job monitor thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:41,557 | INFO     | [data] copytool_in thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:41,854 | INFO     | [data] control thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:41,905 | INFO     | [job] validate thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:41,919 | INFO     | [payload] validate_post thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:42,181 | INFO     | [job] control thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:42,227 | INFO     | [payload] failed_post thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:42,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 19:46:11] 2025-10-14 23:45:42,765 | INFO     | [data] copytool_out thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:43,693 | INFO     | [job] queue monitor thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:45,074 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:45:50,741 | INFO     | job.realtimelogging is not enabled
[2025-10-14 19:46:11] 2025-10-14 23:45:51,746 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 19:46:11] 2025-10-14 23:46:06,223 | INFO     | [monitor] cgroup control has ended
[2025-10-14 19:46:11] 2025-10-14 23:46:06,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140127864792896)>', '<ExcThread(monitor, started 140127561033472)>']
[2025-10-14 19:46:11] 2025-10-14 23:46:10,808 | INFO     | PID=30110 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-14 19:46:11] 2025-10-14 23:46:10,808 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 19:46:11] 2025-10-14 23:46:10,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 19:46:11] 2025-10-14 23:46:10,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 19:46:11] 2025-10-14 23:46:10,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 19:46:11] 2025-10-14 23:46:10,809 | INFO     | [monitor] control thread has ended
[2025-10-14 19:46:11] 2025-10-14 23:46:11,685 | INFO     | all workflow threads have been joined
[2025-10-14 19:46:11] 2025-10-14 23:46:11,686 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 19:46:11] 2025-10-14 23:46:11,686 | INFO     | traces error code: 0
[2025-10-14 19:46:11] 2025-10-14 23:46:11,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 19:46:11] 2025-10-14 23:46:11,781 [wrapper] ==== pilot stdout END ====
[2025-10-14 19:46:11] 2025-10-14 23:46:11,785 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 19:46:11] 2025-10-14 23:46:11,789 [wrapper] pilotpid: 30110
[2025-10-14 19:46:11] 2025-10-14 23:46:11,793 [wrapper] Pilot exit status: 0
[2025-10-14 19:46:11] 2025-10-14 23:46:11,809 [wrapper] pandaids: 6832862873
[2025-10-14 19:46:11] 2025-10-14 23:46:11,849 [wrapper] cleanup supervisor_pilot  9292 30111
[2025-10-14 19:46:11] 2025-10-14 23:46:11,853 [wrapper] Test setup, not cleaning
[2025-10-14 19:46:11] 2025-10-14 23:46:11,857 [wrapper] apfmon messages muted
[2025-10-14 19:46:11] 2025-10-14 23:46:11,861 [wrapper] ==== wrapper stdout END ====
[2025-10-14 19:46:11] 2025-10-14 23:46:11,865 [wrapper] ==== wrapper stderr END ====
[2025-10-14 19:46:11]  *** Error codes and diagnostics ***
[2025-10-14 19:46:12]     "exeErrorCode": 0,
[2025-10-14 19:46:12]     "exeErrorDiag": "",
[2025-10-14 19:46:12]     "pilotErrorCode": 0,
[2025-10-14 19:46:12]     "pilotErrorDiag": "",
[2025-10-14 19:46:12]  *** Listing of results directory ***
[2025-10-14 19:46:12] total 389952
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas    552446 Oct  6 14:52 pilot3.tar.gz
[2025-10-14 19:46:12] -rwx------ 1 boincer umatlas     36292 Oct  6 15:00 runpilot2-wrapper.sh
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas      5112 Oct  6 15:00 queuedata.json
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas       100 Oct 14 18:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 19:46:12] -rwxr-xr-x 1 boincer umatlas      7986 Oct 14 18:39 run_atlas
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas       105 Oct 14 18:39 job.xml
[2025-10-14 19:46:12] -rw-r--r-- 2 boincer umatlas 215680936 Oct 14 18:39 EVNT.46376901._004339.pool.root.1
[2025-10-14 19:46:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 14 18:39 start_atlas.sh
[2025-10-14 19:46:12] drwxrwx--x 2 boincer umatlas      4096 Oct 14 18:39 shared
[2025-10-14 19:46:12] -rw-r--r-- 2 boincer umatlas    565600 Oct 14 18:39 input.tar.gz
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas         0 Oct 14 18:39 boinc_lockfile
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas      2520 Oct 14 18:39 pandaJob.out
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas    974007 Oct 14 18:39 agis_schedconf.cvmfs.json
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas   1560740 Oct 14 18:39 agis_ddmendpoints.agis.ALL.json
[2025-10-14 19:46:12] drwx------ 4 boincer umatlas      4096 Oct 14 18:40 pilot3
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas      5953 Oct 14 19:40 init_data.xml
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas       529 Oct 14 19:44 boinc_task_state.xml
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas 177831789 Oct 14 19:44 HITS.46376905._116913.pool.root.1
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas      1049 Oct 14 19:45 memory_monitor_summary.json
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas    381291 Oct 14 19:45 log.46376905._116913.job.log.tgz.1
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas      7859 Oct 14 19:45 heartbeat.json
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas      8192 Oct 14 19:45 boinc_mmap_file
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas        27 Oct 14 19:45 wrapper_checkpoint.txt
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas        95 Oct 14 19:46 pilot_heartbeat.json
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas      4818 Oct 14 19:46 pilotlog.txt
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas    575635 Oct 14 19:46 log.46376905._116913.job.log.1
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas       357 Oct 14 19:46 output.list
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas       620 Oct 14 19:46 runtime_log
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas    972800 Oct 14 19:46 result.tar.gz
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas      8705 Oct 14 19:46 runtime_log.err
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas       659 Oct 14 19:46 61kMDmAd5P8n9Rq4apOajLDm4fhM0noT9bVof3QYDmVoJMDmvY4CVn.diag
[2025-10-14 19:46:12] -rw-r--r-- 1 boincer umatlas     22079 Oct 14 19:46 stderr.txt
[2025-10-14 19:46:12] HITS file was successfully produced:
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas 177831789 Oct 14 19:44 shared/HITS.pool.root.1
[2025-10-14 19:46:12]  *** Contents of shared directory: ***
[2025-10-14 19:46:12] total 385820
[2025-10-14 19:46:12] -rw-r--r-- 2 boincer umatlas 215680936 Oct 14 18:39 ATLAS.root_0
[2025-10-14 19:46:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 14 18:39 start_atlas.sh
[2025-10-14 19:46:12] -rw-r--r-- 2 boincer umatlas    565600 Oct 14 18:39 input.tar.gz
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas 177831789 Oct 14 19:44 HITS.pool.root.1
[2025-10-14 19:46:12] -rw------- 1 boincer umatlas    972800 Oct 14 19:46 result.tar.gz
19:46:13 (26421): run_atlas exited; CPU time 41688.826654
19:46:13 (26421): called boinc_finish(0)

</stderr_txt>
]]>

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