Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:37:26 (3373326): wrapper (7.7.26015): starting
12:37:26 (3373326): wrapper: running run_atlas (--nthreads 8)
[2025-10-14 12:37:26] Arguments: --nthreads 8
[2025-10-14 12:37:26] Threads: 8
[2025-10-14 12:37:26] Checking for CVMFS
[2025-10-14 12:37:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 12:37:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 12:37:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 12:37:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 12:37:26] 2.13.2.0 2021324 41890 191128 151704 1 11 18562529 25181185 138 16776704 0 138157649 99.631 131402011 26186 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-14 12:37:26] CVMFS is ok
[2025-10-14 12:37:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 12:37:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 12:37:26] Further information can be found at the LHC@home message board.
[2025-10-14 12:37:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 12:37:26] Checking for apptainer binary...
[2025-10-14 12:37:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 12:37:26] Running /usr/bin/apptainer --version
[2025-10-14 12:37:26] apptainer version 1.4.3-1.el9
[2025-10-14 12:37:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 12:37:26] c-16-34.aglt2.org
[2025-10-14 12:37:26] apptainer works
[2025-10-14 12:37:26] Set ATHENA_PROC_NUMBER=8
[2025-10-14 12:37:26] Set ATHENA_CORE_NUMBER=8
[2025-10-14 12:37:26] Starting ATLAS job with PandaID=6832635455
[2025-10-14 12:37:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 13:34:45]  *** The last 200 lines of the pilot log: ***
[2025-10-14 13:34:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6832635455/log.46376905._110554.job.log.tgz.1
[2025-10-14 13:34:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/14/log.46376905._110554.job.log.tgz.1
[2025-10-14 13:34:45]  workdir=None
[2025-10-14 13:34:45] ]
[2025-10-14 13:34:45] 2025-10-14 17:33:54,588 | INFO     | transferring file log.46376905._110554.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6832635455/log.46376905._110554.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-14 13:34:45] 2025-10-14 17:33:54,588 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6832635455/log.46376905._110554.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._110554.job
[2025-10-14 13:34:45] 2025-10-14 17:33:54,599 | INFO     | adding to output.list: log.46376905._110554.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/14/log.46376905._110554.job.log.tg
[2025-10-14 13:34:45] 2025-10-14 17:33:54,599 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-14 13:34:45] 2025-10-14 17:33:54,599 | INFO     | summary of transferred files:
[2025-10-14 13:34:45] 2025-10-14 17:33:54,599 | INFO     |  -- lfn=log.46376905._110554.job.log.tgz.1, status_code=0, status=transferred
[2025-10-14 13:34:45] 2025-10-14 17:33:54,600 | INFO     | stage-out finished correctly
[2025-10-14 13:34:45] 2025-10-14 17:33:55,553 | INFO     | time since job start (3381s) is within the limit (172800.0s)
[2025-10-14 13:34:45] 2025-10-14 17:33:57,559 | INFO     | time since job start (3383s) is within the limit (172800.0s)
[2025-10-14 13:34:45] 2025-10-14 17:33:58,084 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 13:34:45] 2025-10-14 17:33:59,565 | INFO     | time since job start (3385s) is within the limit (172800.0s)
[2025-10-14 13:34:45] 2025-10-14 17:34:00,478 | WARNING  | process 3383462 can no longer be monitored (due to stat problems) - aborting
[2025-10-14 13:34:45] 2025-10-14 17:34:00,478 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832635455/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 13:34:45] 2025-10-14 17:34:00,611 | INFO     | number of running child processes to parent process 3383462: 1
[2025-10-14 13:34:45] 2025-10-14 17:34:00,611 | INFO     | maximum number of monitored processes: 6
[2025-10-14 13:34:45] 2025-10-14 17:34:00,878 | INFO     | job 6832635455 has state=finished
[2025-10-14 13:34:45] 2025-10-14 17:34:00,878 | INFO     | preparing for final server update for job 6832635455 in state='finished'
[2025-10-14 13:34:45] 2025-10-14 17:34:00,879 | INFO     | this job has now completed (state=finished)
[2025-10-14 13:34:45] 2025-10-14 17:34:00,879 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 13:34:45] 2025-10-14 17:34:00,879 | INFO     | log transfer has been attempted: DONE
[2025-10-14 13:34:45] 2025-10-14 17:34:00,879 | INFO     | job 6832635455 has finished - writing final server update
[2025-10-14 13:34:45] 2025-10-14 17:34:00,879 | INFO     | total number of processed events: 400 (read)
[2025-10-14 13:34:45] 2025-10-14 17:34:00,880 | INFO     | executing command: lscpu
[2025-10-14 13:34:45] 2025-10-14 17:34:00,914 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 13:34:45] 2025-10-14 17:34:01,571 | INFO     | time since job start (3387s) is within the limit (172800.0s)
[2025-10-14 13:34:45] 2025-10-14 17:34:02,778 | INFO     | PID=3377034 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 13:34:45] 2025-10-14 17:34:02,778 | INFO     | .. there are 3 such processes running
[2025-10-14 13:34:45] 2025-10-14 17:34:03,114 | INFO     | monitor loop #258: job 0:6832635455 is in state 'finished'
[2025-10-14 13:34:45] 2025-10-14 17:34:03,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:34:45] 2025-10-14 17:34:03,425 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 13:34:45] 2025-10-14 17:34:03,441 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 3284.3350416666667
[2025-10-14 13:34:45] 2025-10-14 17:34:03,446 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832635455/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 13:34:45] 2025-10-14 17:34:03,446 | INFO     | extracted standard info from prmon json
[2025-10-14 13:34:45] 2025-10-14 17:34:03,446 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 13:34:45] 2025-10-14 17:34:03,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 13:34:45] 2025-10-14 17:34:03,446 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 13:34:45] 2025-10-14 17:34:03,446 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 13:34:45] 2025-10-14 17:34:03,447 | INFO     | fitting pss+swap vs Time
[2025-10-14 13:34:45] 2025-10-14 17:34:03,447 | INFO     | sum of square deviations: 36465800.0
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | sum of deviations: -7004873878.0
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | mean x: 1760461643.0
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | mean y: 2487063.102040816
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | -- intersect: 338177209029.2089
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | intersect: 338177209029.2089
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | chi2: 0.12931682242492598
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | -- intersect: 338177209029.2089
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | current memory leak: -192.09 B/s (using 49 data points, chi2=0.13)
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | could have reported an average CPU frequency of 3270 MHz (5 samples)
[2025-10-14 13:34:45] 2025-10-14 17:34:03,448 | INFO     | ..............................
[2025-10-14 13:34:45] 2025-10-14 17:34:03,449 | INFO     | . Timing measurements:
[2025-10-14 13:34:45] 2025-10-14 17:34:03,449 | INFO     | . get job = 0 s
[2025-10-14 13:34:45] 2025-10-14 17:34:03,449 | INFO     | . initial setup = 2 s
[2025-10-14 13:34:45] 2025-10-14 17:34:03,449 | INFO     | . payload setup = 3 s
[2025-10-14 13:34:45] 2025-10-14 17:34:03,449 | INFO     | . stage-in = 0 s
[2025-10-14 13:34:45] 2025-10-14 17:34:03,449 | INFO     | . payload execution = 3359 s
[2025-10-14 13:34:45] 2025-10-14 17:34:03,449 | INFO     | . stage-out = 0 s
[2025-10-14 13:34:45] 2025-10-14 17:34:03,449 | INFO     | . log creation = 0 s
[2025-10-14 13:34:45] 2025-10-14 17:34:03,449 | INFO     | ..............................
[2025-10-14 13:34:45] 2025-10-14 17:34:03,495 | INFO     | 
[2025-10-14 13:34:45] 2025-10-14 17:34:03,495 | INFO     | job summary report
[2025-10-14 13:34:45] 2025-10-14 17:34:03,495 | INFO     | --------------------------------------------------
[2025-10-14 13:34:45] 2025-10-14 17:34:03,495 | INFO     | PanDA job id: 6832635455
[2025-10-14 13:34:45] 2025-10-14 17:34:03,495 | INFO     | task id: 46376905
[2025-10-14 13:34:45] 2025-10-14 17:34:03,495 | INFO     | errors: (none)
[2025-10-14 13:34:45] 2025-10-14 17:34:03,495 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 13:34:45] 2025-10-14 17:34:03,495 | INFO     | pilot state: finished 
[2025-10-14 13:34:45] 2025-10-14 17:34:03,495 | INFO     | transexitcode: 0
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | exeerrorcode: 0
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | exeerrordiag: 
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | exitcode: 0
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | exitmsg: OK
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | cpuconsumptiontime: 25001 s
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | nevents: 400
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | neventsw: 0
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | pid: 3383462
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | pgrp: 3383462
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | corecount: 8
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | event service: False
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | sizes: {0: 2348713, 1: 2348912, 3: 2349174, 11: 2349202, 3366: 2383892, 3370: 2383892, 3375: 2384246}
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | --------------------------------------------------
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | 
[2025-10-14 13:34:45] 2025-10-14 17:34:03,496 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,507 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | job 6832635455 has completed (purged errors)
[2025-10-14 13:34:45] 2025-10-14 17:34:03,508 | INFO     | overall cleanup function is called
[2025-10-14 13:34:45] 2025-10-14 17:34:04,515 | INFO     | --- collectZombieJob: --- 10, [3383462]
[2025-10-14 13:34:45] 2025-10-14 17:34:04,515 | INFO     | zombie collector waiting for pid 3383462
[2025-10-14 13:34:45] 2025-10-14 17:34:04,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 13:34:45] 2025-10-14 17:34:04,515 | INFO     | collected zombie processes
[2025-10-14 13:34:45] 2025-10-14 17:34:04,515 | INFO     | will attempt to kill all subprocesses of pid=3383462
[2025-10-14 13:34:45] 2025-10-14 17:34:04,661 | INFO     | process IDs to be killed: [3383462] (in reverse order)
[2025-10-14 13:34:45] 2025-10-14 17:34:04,698 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 13:34:45] 2025-10-14 17:34:04,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 13:34:45] 2025-10-14 17:34:04,702 | INFO     | did not find any defunct processes belonging to 3383462
[2025-10-14 13:34:45] 2025-10-14 17:34:04,706 | INFO     | did not find any defunct processes belonging to 3383462
[2025-10-14 13:34:45] 2025-10-14 17:34:04,706 | INFO     | ready for new job
[2025-10-14 13:34:45] 2025-10-14 17:34:04,706 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 13:34:45] 2025-10-14 17:34:04,707 | INFO     | ***************************************
[2025-10-14 13:34:45] 2025-10-14 17:34:04,707 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-14 13:34:45] 2025-10-14 17:34:04,707 | INFO     | ***************************************
[2025-10-14 13:34:45] 2025-10-14 17:34:04,707 | INFO     | 
[2025-10-14 13:34:45] 2025-10-14 17:34:04,719 | INFO     | architecture information:
[2025-10-14 13:34:45] 2025-10-14 17:34:04,719 | INFO     | executing command: cat /etc/os-release
[2025-10-14 13:34:45] 2025-10-14 17:34:04,727 | INFO     | cat /etc/os-release:
[2025-10-14 13:34:45] NAME="CentOS Linux"
[2025-10-14 13:34:45] VERSION="7 (Core)"
[2025-10-14 13:34:45] ID="centos"
[2025-10-14 13:34:45] ID_LIKE="rhel fedora"
[2025-10-14 13:34:45] VERSION_ID="7"
[2025-10-14 13:34:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 13:34:45] ANSI_COLOR="0;31"
[2025-10-14 13:34:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 13:34:45] HOME_URL="https://www.centos.org/"
[2025-10-14 13:34:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 13:34:45] 
[2025-10-14 13:34:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 13:34:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 13:34:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 13:34:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 13:34:45] 
[2025-10-14 13:34:45] 2025-10-14 17:34:04,727 | INFO     | ***************************************
[2025-10-14 13:34:45] 2025-10-14 17:34:05,230 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-14 13:34:45] 2025-10-14 17:34:05,237 | INFO     | sufficient remaining disk space (64558727168 B)
[2025-10-14 13:34:45] 2025-10-14 17:34:05,237 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 13:34:45] 2025-10-14 17:34:05,237 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 13:34:45] 2025-10-14 17:34:05,237 | INFO     | update_server=False
[2025-10-14 13:34:45] 2025-10-14 17:34:05,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 13:34:45] 2025-10-14 17:34:05,237 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 13:34:45] 2025-10-14 17:34:05,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 13:34:45] 2025-10-14 17:34:05,617 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-14 13:34:45] 2025-10-14 17:34:05,618 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-14 13:34:45] 2025-10-14 17:34:05,618 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 13:34:45] 2025-10-14 17:34:05,618 | INFO     | will abort loop
[2025-10-14 13:34:45] 2025-10-14 17:34:05,832 | INFO     | all data control threads have been joined
[2025-10-14 13:34:45] 2025-10-14 17:34:06,009 | INFO     | all payload control threads have been joined
[2025-10-14 13:34:45] 2025-10-14 17:34:06,242 | INFO     | [job] retrieve thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:06,243 | INFO     | [job] queue monitor thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:06,414 | INFO     | [payload] validate_post thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:06,623 | INFO     | [job] job monitor thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:06,755 | INFO     | [data] copytool_in thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:06,837 | INFO     | [data] control thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:06,884 | INFO     | all job control threads have been joined
[2025-10-14 13:34:45] 2025-10-14 17:34:06,940 | INFO     | [job] validate thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:06,966 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:07,015 | INFO     | [payload] control thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:07,155 | INFO     | [payload] failed_post thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:07,155 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:07,168 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:07,243 | INFO     | [data] copytool_out thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:07,889 | INFO     | [job] control thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:08,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 13:34:45] 2025-10-14 17:34:12,643 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:15,776 | INFO     | job.realtimelogging is not enabled
[2025-10-14 13:34:45] 2025-10-14 17:34:16,782 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 13:34:45] 2025-10-14 17:34:35,041 | INFO     | PID=3377034 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 13:34:45] 2025-10-14 17:34:35,042 | INFO     | .. there are 3 such processes running
[2025-10-14 13:34:45] 2025-10-14 17:34:35,042 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 13:34:45] 2025-10-14 17:34:35,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 13:34:45] 2025-10-14 17:34:35,042 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 13:34:45] 2025-10-14 17:34:37,798 | INFO     | [monitor] cgroup control has ended
[2025-10-14 13:34:45] 2025-10-14 17:34:39,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139764342675264)>', '<ExcThread(monitor, started 139763856168704)>']
[2025-10-14 13:34:45] 2025-10-14 17:34:40,068 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 13:34:45] 2025-10-14 17:34:40,085 | INFO     | [monitor] control thread has ended
[2025-10-14 13:34:45] 2025-10-14 17:34:44,892 | INFO     | all workflow threads have been joined
[2025-10-14 13:34:45] 2025-10-14 17:34:44,893 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 13:34:45] 2025-10-14 17:34:44,893 | INFO     | traces error code: 0
[2025-10-14 13:34:45] 2025-10-14 17:34:44,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 13:34:45] 2025-10-14 17:34:44,951 [wrapper] ==== pilot stdout END ====
[2025-10-14 13:34:45] 2025-10-14 17:34:44,953 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 13:34:45] 2025-10-14 17:34:44,955 [wrapper] pilotpid: 3377034
[2025-10-14 13:34:45] 2025-10-14 17:34:44,956 [wrapper] Pilot exit status: 0
[2025-10-14 13:34:45] 2025-10-14 17:34:44,962 [wrapper] pandaids: 6832635455
[2025-10-14 13:34:45] 2025-10-14 17:34:44,988 [wrapper] cleanup supervisor_pilot 3450909 3377035
[2025-10-14 13:34:45] 2025-10-14 17:34:44,990 [wrapper] Test setup, not cleaning
[2025-10-14 13:34:45] 2025-10-14 17:34:44,992 [wrapper] apfmon messages muted
[2025-10-14 13:34:45] 2025-10-14 17:34:44,994 [wrapper] ==== wrapper stdout END ====
[2025-10-14 13:34:45] 2025-10-14 17:34:44,995 [wrapper] ==== wrapper stderr END ====
[2025-10-14 13:34:45]  *** Error codes and diagnostics ***
[2025-10-14 13:34:45]     "exeErrorCode": 0,
[2025-10-14 13:34:45]     "exeErrorDiag": "",
[2025-10-14 13:34:45]     "pilotErrorCode": 0,
[2025-10-14 13:34:45]     "pilotErrorDiag": "",
[2025-10-14 13:34:45]  *** Listing of results directory ***
[2025-10-14 13:34:45] total 391524
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas    552446 Oct  6 07:27 pilot3.tar.gz
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas      5112 Oct  6 07:40 queuedata.json
[2025-10-14 13:34:45] -rwx------. 1 boincer umatlas     36292 Oct  6 07:40 runpilot2-wrapper.sh
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas       100 Oct 14 12:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 13:34:45] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 14 12:37 run_atlas
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas       105 Oct 14 12:37 job.xml
[2025-10-14 13:34:45] -rw-r--r--. 2 boincer umatlas 215809043 Oct 14 12:37 EVNT.46376901._004099.pool.root.1
[2025-10-14 13:34:45] -rw-r--r--. 2 boincer umatlas     15120 Oct 14 12:37 start_atlas.sh
[2025-10-14 13:34:45] drwxrwx--x. 2 boincer umatlas      4096 Oct 14 12:37 shared
[2025-10-14 13:34:45] -rw-r--r--. 2 boincer umatlas    565604 Oct 14 12:37 input.tar.gz
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas         0 Oct 14 12:37 boinc_lockfile
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas      2521 Oct 14 12:37 pandaJob.out
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas    973983 Oct 14 12:37 agis_schedconf.cvmfs.json
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas   1560740 Oct 14 12:37 agis_ddmendpoints.agis.ALL.json
[2025-10-14 13:34:45] drwx------. 4 boincer umatlas      4096 Oct 14 12:37 pilot3
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas      6614 Oct 14 13:29 init_data.xml
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas 179551899 Oct 14 13:33 HITS.46376905._110554.pool.root.1
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas       529 Oct 14 13:33 boinc_task_state.xml
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas      1027 Oct 14 13:33 memory_monitor_summary.json
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas    321780 Oct 14 13:33 log.46376905._110554.job.log.tgz.1
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas      7815 Oct 14 13:34 heartbeat.json
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas      8192 Oct 14 13:34 boinc_mmap_file
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas        27 Oct 14 13:34 wrapper_checkpoint.txt
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas        95 Oct 14 13:34 pilot_heartbeat.json
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas      5081 Oct 14 13:34 pilotlog.txt
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas    516768 Oct 14 13:34 log.46376905._110554.job.log.1
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas       357 Oct 14 13:34 output.list
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas       620 Oct 14 13:34 runtime_log
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas    860160 Oct 14 13:34 result.tar.gz
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas      8698 Oct 14 13:34 runtime_log.err
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas       649 Oct 14 13:34 DgKLDm0kyP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmO7IMDmG5nerm.diag
[2025-10-14 13:34:45] -rw-r--r--. 1 boincer umatlas     22305 Oct 14 13:34 stderr.txt
[2025-10-14 13:34:45] HITS file was successfully produced:
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas 179551899 Oct 14 13:33 shared/HITS.pool.root.1
[2025-10-14 13:34:45]  *** Contents of shared directory: ***
[2025-10-14 13:34:45] total 387508
[2025-10-14 13:34:45] -rw-r--r--. 2 boincer umatlas 215809043 Oct 14 12:37 ATLAS.root_0
[2025-10-14 13:34:45] -rw-r--r--. 2 boincer umatlas     15120 Oct 14 12:37 start_atlas.sh
[2025-10-14 13:34:45] -rw-r--r--. 2 boincer umatlas    565604 Oct 14 12:37 input.tar.gz
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas 179551899 Oct 14 13:33 HITS.pool.root.1
[2025-10-14 13:34:45] -rw-------. 1 boincer umatlas    860160 Oct 14 13:34 result.tar.gz
13:34:46 (3373326): run_atlas exited; CPU time 25055.798137
13:34:46 (3373326): called boinc_finish(0)

</stderr_txt>
]]>

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