Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:37:49 (294297): wrapper (7.7.26015): starting
11:37:49 (294297): wrapper: running run_atlas (--nthreads 9)
[2025-10-14 11:37:49] Arguments: --nthreads 9
[2025-10-14 11:37:49] Threads: 9
[2025-10-14 11:37:49] Checking for CVMFS
[2025-10-14 11:37:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 11:37:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 11:37:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 11:37:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 11:37:50] 2.13.2.0 5986 8749 113152 151702 2 83 28395772 40960001 19541 16776704 0 19329322 99.947 2579245 30545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-14 11:37:50] CVMFS is ok
[2025-10-14 11:37:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 11:37:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 11:37:50] Further information can be found at the LHC@home message board.
[2025-10-14 11:37:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 11:37:50] Checking for apptainer binary...
[2025-10-14 11:37:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 11:37:50] Running /usr/bin/apptainer --version
[2025-10-14 11:37:50] apptainer version 1.4.3-1.el9
[2025-10-14 11:37:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 11:37:50] c-211-33-3.aglt2.org
[2025-10-14 11:37:50] apptainer works
[2025-10-14 11:37:50] Set ATHENA_PROC_NUMBER=9
[2025-10-14 11:37:50] Set ATHENA_CORE_NUMBER=9
[2025-10-14 11:37:50] Starting ATLAS job with PandaID=6832674612
[2025-10-14 11:37:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 13:12:27]  *** The last 200 lines of the pilot log: ***
[2025-10-14 13:12:27] 2025-10-14 17:11:43,405 | INFO     | time since job start (5613s) is within the limit (172800.0s)
[2025-10-14 13:12:27] 2025-10-14 17:11:45,193 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 13:12:27] 2025-10-14 17:11:45,411 | INFO     | time since job start (5615s) is within the limit (172800.0s)
[2025-10-14 13:12:27] 2025-10-14 17:11:45,682 | WARNING  | process 304617 can no longer be monitored (due to stat problems) - aborting
[2025-10-14 13:12:27] 2025-10-14 17:11:45,682 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832674612/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 13:12:27] 2025-10-14 17:11:45,684 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832674612/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 13:12:27] 2025-10-14 17:11:45,685 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3722476 B
[2025-10-14 13:12:27] 2025-10-14 17:11:45,685 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15311 B
[2025-10-14 13:12:27] 2025-10-14 17:11:45,685 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-14 13:12:27] 2025-10-14 17:11:45,712 | INFO     | sufficient remaining disk space (129861943296 B)
[2025-10-14 13:12:27] 2025-10-14 17:11:45,713 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-14 13:12:27] 2025-10-14 17:11:45,714 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6832674612: 4027583 B (within 2537553920 B limit)
[2025-10-14 13:12:27] 2025-10-14 17:11:45,714 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6832674612/HITS.46376905._112215.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-14 13:12:27] 2025-10-14 17:11:45,714 | INFO     | total size of present files: 0 B (workdir size: 4027583 B)
[2025-10-14 13:12:27] 2025-10-14 17:11:45,714 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6832674612/HITS.46376905._112215.pool.root.1 since it does not exist
[2025-10-14 13:12:27] 2025-10-14 17:11:46,042 | INFO     | number of running child processes to parent process 304617: 1
[2025-10-14 13:12:27] 2025-10-14 17:11:46,043 | INFO     | maximum number of monitored processes: 6
[2025-10-14 13:12:27] 2025-10-14 17:11:46,696 | INFO     | job 6832674612 has state=finished
[2025-10-14 13:12:27] 2025-10-14 17:11:46,697 | INFO     | preparing for final server update for job 6832674612 in state='finished'
[2025-10-14 13:12:27] 2025-10-14 17:11:46,698 | INFO     | this job has now completed (state=finished)
[2025-10-14 13:12:27] 2025-10-14 17:11:46,698 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 13:12:27] 2025-10-14 17:11:46,698 | INFO     | log transfer has been attempted: DONE
[2025-10-14 13:12:27] 2025-10-14 17:11:46,698 | INFO     | job 6832674612 has finished - writing final server update
[2025-10-14 13:12:27] 2025-10-14 17:11:46,699 | INFO     | total number of processed events: 400 (read)
[2025-10-14 13:12:27] 2025-10-14 17:11:46,703 | INFO     | executing command: lscpu
[2025-10-14 13:12:27] 2025-10-14 17:11:46,786 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 13:12:27] 2025-10-14 17:11:47,421 | INFO     | time since job start (5617s) is within the limit (172800.0s)
[2025-10-14 13:12:27] 2025-10-14 17:11:48,547 | INFO     | monitor loop #384: job 0:6832674612 is in state 'finished'
[2025-10-14 13:12:27] 2025-10-14 17:11:48,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:12:27] 2025-10-14 17:11:49,430 | INFO     | time since job start (5619s) is within the limit (172800.0s)
[2025-10-14 13:12:27] 2025-10-14 17:11:51,052 | INFO     | monitor loop #385: job 0:6832674612 is in state 'finished'
[2025-10-14 13:12:27] 2025-10-14 17:11:51,052 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:12:27] 2025-10-14 17:11:51,438 | INFO     | time since job start (5621s) is within the limit (172800.0s)
[2025-10-14 13:12:27] 2025-10-14 17:11:53,445 | INFO     | time since job start (5623s) is within the limit (172800.0s)
[2025-10-14 13:12:27] 2025-10-14 17:11:53,557 | INFO     | monitor loop #386: job 0:6832674612 is in state 'finished'
[2025-10-14 13:12:27] 2025-10-14 17:11:53,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:12:27] 2025-10-14 17:11:54,201 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-14 13:12:27] 2025-10-14 17:11:54,212 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2680.8370625000002
[2025-10-14 13:12:27] 2025-10-14 17:11:54,228 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832674612/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 13:12:27] 2025-10-14 17:11:54,229 | INFO     | extracted standard info from prmon json
[2025-10-14 13:12:27] 2025-10-14 17:11:54,229 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 13:12:27] 2025-10-14 17:11:54,229 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 13:12:27] 2025-10-14 17:11:54,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 13:12:27] 2025-10-14 17:11:54,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 13:12:27] 2025-10-14 17:11:54,232 | INFO     | fitting pss+swap vs Time
[2025-10-14 13:12:27] 2025-10-14 17:11:54,233 | INFO     | sum of square deviations: 190396639.1764707
[2025-10-14 13:12:27] 2025-10-14 17:11:54,233 | INFO     | sum of deviations: -15639346607.23529
[2025-10-14 13:12:27] 2025-10-14 17:11:54,233 | INFO     | mean x: 1760459192.5294118
[2025-10-14 13:12:27] 2025-10-14 17:11:54,233 | INFO     | mean y: 2696785.294117647
[2025-10-14 13:12:27] 2025-10-14 17:11:54,233 | INFO     | -- intersect: 144608355892.24072
[2025-10-14 13:12:27] 2025-10-14 17:11:54,234 | INFO     | intersect: 144608355892.24072
[2025-10-14 13:12:27] 2025-10-14 17:11:54,234 | INFO     | chi2: 0.1705036669842774
[2025-10-14 13:12:27] 2025-10-14 17:11:54,234 | INFO     | -- intersect: 144608355892.24072
[2025-10-14 13:12:27] 2025-10-14 17:11:54,234 | INFO     | current memory leak: -82.14 B/s (using 85 data points, chi2=0.17)
[2025-10-14 13:12:27] 2025-10-14 17:11:54,235 | INFO     | could have reported an average CPU frequency of 2614 MHz (7 samples)
[2025-10-14 13:12:27] 2025-10-14 17:11:54,235 | INFO     | ..............................
[2025-10-14 13:12:27] 2025-10-14 17:11:54,235 | INFO     | . Timing measurements:
[2025-10-14 13:12:27] 2025-10-14 17:11:54,235 | INFO     | . get job = 0 s
[2025-10-14 13:12:27] 2025-10-14 17:11:54,235 | INFO     | . initial setup = 3 s
[2025-10-14 13:12:27] 2025-10-14 17:11:54,235 | INFO     | . payload setup = 9 s
[2025-10-14 13:12:27] 2025-10-14 17:11:54,235 | INFO     | . stage-in = 0 s
[2025-10-14 13:12:27] 2025-10-14 17:11:54,236 | INFO     | . payload execution = 5579 s
[2025-10-14 13:12:27] 2025-10-14 17:11:54,236 | INFO     | . stage-out = 1 s
[2025-10-14 13:12:27] 2025-10-14 17:11:54,236 | INFO     | . log creation = 0 s
[2025-10-14 13:12:27] 2025-10-14 17:11:54,236 | INFO     | ..............................
[2025-10-14 13:12:27] 2025-10-14 17:11:54,353 | INFO     | 
[2025-10-14 13:12:27] 2025-10-14 17:11:54,354 | INFO     | job summary report
[2025-10-14 13:12:27] 2025-10-14 17:11:54,354 | INFO     | --------------------------------------------------
[2025-10-14 13:12:27] 2025-10-14 17:11:54,354 | INFO     | PanDA job id: 6832674612
[2025-10-14 13:12:27] 2025-10-14 17:11:54,354 | INFO     | task id: 46376905
[2025-10-14 13:12:27] 2025-10-14 17:11:54,354 | INFO     | errors: (none)
[2025-10-14 13:12:27] 2025-10-14 17:11:54,354 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | pilot state: finished 
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | transexitcode: 0
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | exeerrorcode: 0
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | exeerrordiag: 
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | exitcode: 0
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | exitmsg: OK
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | cpuconsumptiontime: 41028 s
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | nevents: 400
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | neventsw: 0
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | pid: 304617
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | pgrp: 304617
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | corecount: 9
[2025-10-14 13:12:27] 2025-10-14 17:11:54,355 | INFO     | event service: False
[2025-10-14 13:12:27] 2025-10-14 17:11:54,356 | INFO     | sizes: {0: 2348713, 1: 2348912, 8: 2349174, 11: 2349202, 5592: 2375872, 5594: 2384870, 5596: 2385054, 5605: 2385276}
[2025-10-14 13:12:27] 2025-10-14 17:11:54,356 | INFO     | --------------------------------------------------
[2025-10-14 13:12:27] 2025-10-14 17:11:54,356 | INFO     | 
[2025-10-14 13:12:27] 2025-10-14 17:11:54,356 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-14 13:12:27] 2025-10-14 17:11:54,392 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,393 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,393 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 13:12:27] 2025-10-14 17:11:54,394 | INFO     | job 6832674612 has completed (purged errors)
[2025-10-14 13:12:27] 2025-10-14 17:11:54,395 | INFO     | overall cleanup function is called
[2025-10-14 13:12:27] 2025-10-14 17:11:55,406 | INFO     | --- collectZombieJob: --- 10, [304617]
[2025-10-14 13:12:27] 2025-10-14 17:11:55,406 | INFO     | zombie collector waiting for pid 304617
[2025-10-14 13:12:27] 2025-10-14 17:11:55,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 13:12:27] 2025-10-14 17:11:55,406 | INFO     | collected zombie processes
[2025-10-14 13:12:27] 2025-10-14 17:11:55,407 | INFO     | will attempt to kill all subprocesses of pid=304617
[2025-10-14 13:12:27] 2025-10-14 17:11:55,737 | INFO     | process IDs to be killed: [304617] (in reverse order)
[2025-10-14 13:12:27] 2025-10-14 17:11:55,846 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 13:12:27] 2025-10-14 17:11:55,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 13:12:27] 2025-10-14 17:11:55,860 | INFO     | did not find any defunct processes belonging to 304617
[2025-10-14 13:12:27] 2025-10-14 17:11:55,875 | INFO     | did not find any defunct processes belonging to 304617
[2025-10-14 13:12:27] 2025-10-14 17:11:55,875 | INFO     | ready for new job
[2025-10-14 13:12:27] 2025-10-14 17:11:55,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 13:12:27] 2025-10-14 17:11:55,878 | INFO     | ***************************************
[2025-10-14 13:12:27] 2025-10-14 17:11:55,878 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-14 13:12:27] 2025-10-14 17:11:55,878 | INFO     | ***************************************
[2025-10-14 13:12:27] 2025-10-14 17:11:55,878 | INFO     | 
[2025-10-14 13:12:27] 2025-10-14 17:11:55,883 | INFO     | architecture information:
[2025-10-14 13:12:27] 2025-10-14 17:11:55,884 | INFO     | executing command: cat /etc/os-release
[2025-10-14 13:12:27] 2025-10-14 17:11:55,910 | INFO     | cat /etc/os-release:
[2025-10-14 13:12:27] NAME="CentOS Linux"
[2025-10-14 13:12:27] VERSION="7 (Core)"
[2025-10-14 13:12:27] ID="centos"
[2025-10-14 13:12:27] ID_LIKE="rhel fedora"
[2025-10-14 13:12:27] VERSION_ID="7"
[2025-10-14 13:12:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 13:12:27] ANSI_COLOR="0;31"
[2025-10-14 13:12:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 13:12:27] HOME_URL="https://www.centos.org/"
[2025-10-14 13:12:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 13:12:27] 
[2025-10-14 13:12:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 13:12:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 13:12:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 13:12:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 13:12:27] 
[2025-10-14 13:12:27] 2025-10-14 17:11:55,910 | INFO     | ***************************************
[2025-10-14 13:12:27] 2025-10-14 17:11:56,414 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-14 13:12:27] 2025-10-14 17:11:56,464 | INFO     | sufficient remaining disk space (129866137600 B)
[2025-10-14 13:12:27] 2025-10-14 17:11:56,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 13:12:27] 2025-10-14 17:11:56,465 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 13:12:27] 2025-10-14 17:11:56,466 | INFO     | update_server=False
[2025-10-14 13:12:27] 2025-10-14 17:11:56,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 13:12:27] 2025-10-14 17:11:56,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 13:12:27] 2025-10-14 17:11:56,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 13:12:27] 2025-10-14 17:11:56,705 | INFO     | all payload control threads have been joined
[2025-10-14 13:12:27] 2025-10-14 17:11:57,088 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 13:12:27] 2025-10-14 17:11:57,088 | INFO     | aborting loop
[2025-10-14 13:12:27] 2025-10-14 17:11:57,174 | INFO     | all data control threads have been joined
[2025-10-14 13:12:27] 2025-10-14 17:11:57,472 | INFO     | [job] retrieve thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:57,520 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:57,566 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:57,711 | INFO     | [payload] control thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:57,831 | INFO     | [data] copytool_in thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:57,832 | INFO     | [job] validate thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:58,094 | INFO     | [job] job monitor thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:58,173 | INFO     | all job control threads have been joined
[2025-10-14 13:12:27] 2025-10-14 17:11:58,180 | INFO     | [data] control thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:58,242 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:58,357 | INFO     | [payload] failed_post thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:58,413 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:58,474 | INFO     | [data] copytool_out thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:58,548 | INFO     | [payload] validate_post thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:59,179 | INFO     | [job] control thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:11:59,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 13:12:27] 2025-10-14 17:12:00,374 | INFO     | [job] queue monitor thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:12:00,475 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 13:12:27] 2025-10-14 17:12:19,010 | INFO     | [monitor] cgroup control has ended
[2025-10-14 13:12:27] 2025-10-14 17:12:19,224 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139839814022976)>', '<ExcThread(monitor, started 139838959380224)>']
[2025-10-14 13:12:27] 2025-10-14 17:12:24,249 | INFO     | all workflow threads have been joined
[2025-10-14 13:12:27] 2025-10-14 17:12:24,250 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 13:12:27] 2025-10-14 17:12:24,251 | INFO     | traces error code: 0
[2025-10-14 13:12:27] 2025-10-14 17:12:24,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 13:12:27] 2025-10-14 17:12:26,956 | INFO     | PID=298198 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 13:12:27] 2025-10-14 17:12:26,957 | INFO     | .. there are 13 such processes running
[2025-10-14 13:12:27] 2025-10-14 17:12:26,958 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 13:12:27] 2025-10-14 17:12:26,958 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 13:12:27] 2025-10-14 17:12:26,958 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 13:12:27] 2025-10-14 17:12:26,958 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 13:12:27] 2025-10-14 17:12:26,958 | INFO     | [monitor] control thread has ended
[2025-10-14 13:12:27] 2025-10-14 17:12:27,411 [wrapper] ==== pilot stdout END ====
[2025-10-14 13:12:27] 2025-10-14 17:12:27,420 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 13:12:27] 2025-10-14 17:12:27,425 [wrapper] pilotpid: 298198
[2025-10-14 13:12:27] 2025-10-14 17:12:27,430 [wrapper] Pilot exit status: 0
[2025-10-14 13:12:27] 2025-10-14 17:12:27,455 [wrapper] pandaids: 6832674612
[2025-10-14 13:12:27] 2025-10-14 17:12:27,536 [wrapper] cleanup supervisor_pilot  446655 298199
[2025-10-14 13:12:27] 2025-10-14 17:12:27,540 [wrapper] Test setup, not cleaning
[2025-10-14 13:12:27] 2025-10-14 17:12:27,544 [wrapper] apfmon messages muted
[2025-10-14 13:12:27] 2025-10-14 17:12:27,548 [wrapper] ==== wrapper stdout END ====
[2025-10-14 13:12:27] 2025-10-14 17:12:27,551 [wrapper] ==== wrapper stderr END ====
[2025-10-14 13:12:27]  *** Error codes and diagnostics ***
[2025-10-14 13:12:27]     "exeErrorCode": 0,
[2025-10-14 13:12:27]     "exeErrorDiag": "",
[2025-10-14 13:12:27]     "pilotErrorCode": 0,
[2025-10-14 13:12:27]     "pilotErrorDiag": "",
[2025-10-14 13:12:27]  *** Listing of results directory ***
[2025-10-14 13:12:27] total 389016
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas    552446 Oct  6 09:04 pilot3.tar.gz
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas      5112 Oct  6 09:25 queuedata.json
[2025-10-14 13:12:27] -rwx------. 1 boincer umatlas     36292 Oct  6 09:25 runpilot2-wrapper.sh
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas       100 Oct 14 11:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 13:12:27] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 14 11:37 run_atlas
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas       105 Oct 14 11:37 job.xml
[2025-10-14 13:12:27] -rw-r--r--. 2 boincer umatlas 215132865 Oct 14 11:37 EVNT.46376901._004162.pool.root.1
[2025-10-14 13:12:27] -rw-r--r--. 2 boincer umatlas     15120 Oct 14 11:37 start_atlas.sh
[2025-10-14 13:12:27] drwxrwx--x. 2 boincer umatlas      4096 Oct 14 11:37 shared
[2025-10-14 13:12:27] -rw-r--r--. 2 boincer umatlas    565603 Oct 14 11:37 input.tar.gz
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas         0 Oct 14 11:37 boinc_lockfile
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas      2521 Oct 14 11:37 pandaJob.out
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas    973975 Oct 14 11:38 agis_schedconf.cvmfs.json
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas   1560740 Oct 14 11:38 agis_ddmendpoints.agis.ALL.json
[2025-10-14 13:12:27] drwx------. 4 boincer umatlas      4096 Oct 14 11:38 pilot3
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas      6858 Oct 14 13:09 init_data.xml
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas 177035284 Oct 14 13:11 HITS.46376905._112215.pool.root.1
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas       529 Oct 14 13:11 boinc_task_state.xml
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas      1045 Oct 14 13:11 memory_monitor_summary.json
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas        95 Oct 14 13:11 pilot_heartbeat.json
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas    362085 Oct 14 13:11 log.46376905._112215.job.log.tgz.1
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas      7836 Oct 14 13:11 heartbeat.json
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas      8192 Oct 14 13:12 boinc_mmap_file
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas        27 Oct 14 13:12 wrapper_checkpoint.txt
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas       822 Oct 14 13:12 pilotlog.txt
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas    787977 Oct 14 13:12 log.46376905._112215.job.log.1
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas       357 Oct 14 13:12 output.list
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas       620 Oct 14 13:12 runtime_log
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas   1167360 Oct 14 13:12 result.tar.gz
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas       655 Oct 14 13:12 vlvLDmhO0P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIbTNDmrIcQQn.diag
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas      8713 Oct 14 13:12 runtime_log.err
[2025-10-14 13:12:27] -rw-r--r--. 1 boincer umatlas     22460 Oct 14 13:12 stderr.txt
[2025-10-14 13:12:27] HITS file was successfully produced:
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas 177035284 Oct 14 13:11 shared/HITS.pool.root.1
[2025-10-14 13:12:27]  *** Contents of shared directory: ***
[2025-10-14 13:12:27] total 384700
[2025-10-14 13:12:27] -rw-r--r--. 2 boincer umatlas 215132865 Oct 14 11:37 ATLAS.root_0
[2025-10-14 13:12:27] -rw-r--r--. 2 boincer umatlas     15120 Oct 14 11:37 start_atlas.sh
[2025-10-14 13:12:27] -rw-r--r--. 2 boincer umatlas    565603 Oct 14 11:37 input.tar.gz
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas 177035284 Oct 14 13:11 HITS.pool.root.1
[2025-10-14 13:12:27] -rw-------. 1 boincer umatlas   1167360 Oct 14 13:12 result.tar.gz
13:12:28 (294297): run_atlas exited; CPU time 41173.760802
13:12:28 (294297): called boinc_finish(0)

</stderr_txt>
]]>

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