Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:03:40 (32530): wrapper (7.7.26015): starting
10:03:40 (32530): wrapper: running run_atlas (--nthreads 12)
[2025-10-14 10:03:40] Arguments: --nthreads 12
[2025-10-14 10:03:40] Threads: 12
[2025-10-14 10:03:40] Checking for CVMFS
[2025-10-14 10:03:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 10:03:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 10:03:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 10:03:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 10:03:40] 2.11.2.0 2914 225857 99000 151698 2 1 18406192 20275200 1 130560 1 110137440 99.983 13352026 12412 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-14 10:03:40] CVMFS is ok
[2025-10-14 10:03:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 10:03:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 10:03:40] Further information can be found at the LHC@home message board.
[2025-10-14 10:03:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 10:03:40] Checking for apptainer binary...
[2025-10-14 10:03:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 10:03:40] Running /usr/bin/apptainer --version
[2025-10-14 10:03:40] apptainer version 1.3.2-1.el7
[2025-10-14 10:03:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 10:03:42] c-205-5.aglt2.org
[2025-10-14 10:03:42] apptainer works
[2025-10-14 10:03:42] Set ATHENA_PROC_NUMBER=12
[2025-10-14 10:03:42] Set ATHENA_CORE_NUMBER=12
[2025-10-14 10:03:42] Starting ATLAS job with PandaID=6832635562
[2025-10-14 10:03:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 11:08:20]  *** The last 200 lines of the pilot log: ***
[2025-10-14 11:08:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6832635562/log.46376905._110661.job.log.tgz.1
[2025-10-14 11:08:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/98/log.46376905._110661.job.log.tgz.1
[2025-10-14 11:08:20]  workdir=None
[2025-10-14 11:08:20] ]
[2025-10-14 11:08:20] 2025-10-14 15:07:37,563 | INFO     | transferring file log.46376905._110661.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6832635562/log.46376905._110661.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-14 11:08:20] 2025-10-14 15:07:37,564 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6832635562/log.46376905._110661.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._110661.job
[2025-10-14 11:08:20] 2025-10-14 15:07:37,584 | INFO     | adding to output.list: log.46376905._110661.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/98/log.46376905._110661.job.log.tg
[2025-10-14 11:08:20] 2025-10-14 15:07:37,585 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-14 11:08:20] 2025-10-14 15:07:37,585 | INFO     | summary of transferred files:
[2025-10-14 11:08:20] 2025-10-14 15:07:37,585 | INFO     |  -- lfn=log.46376905._110661.job.log.tgz.1, status_code=0, status=transferred
[2025-10-14 11:08:20] 2025-10-14 15:07:37,585 | INFO     | stage-out finished correctly
[2025-10-14 11:08:20] 2025-10-14 15:07:38,213 | WARNING  | process 10425 can no longer be monitored (due to stat problems) - aborting
[2025-10-14 11:08:20] 2025-10-14 15:07:38,213 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832635562/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 11:08:20] 2025-10-14 15:07:38,300 | INFO     | number of running child processes to parent process 10425: 1
[2025-10-14 11:08:20] 2025-10-14 15:07:38,300 | INFO     | maximum number of monitored processes: 6
[2025-10-14 11:08:20] 2025-10-14 15:07:38,849 | INFO     | time since job start (3820s) is within the limit (172800.0s)
[2025-10-14 11:08:20] 2025-10-14 15:07:40,044 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 11:08:20] 2025-10-14 15:07:40,803 | INFO     | monitor loop #286: job 0:6832635562 is in state 'finished'
[2025-10-14 11:08:20] 2025-10-14 15:07:40,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 11:08:20] 2025-10-14 15:07:40,855 | INFO     | time since job start (3822s) is within the limit (172800.0s)
[2025-10-14 11:08:20] 2025-10-14 15:07:42,861 | INFO     | time since job start (3824s) is within the limit (172800.0s)
[2025-10-14 11:08:20] 2025-10-14 15:07:42,927 | INFO     | job 6832635562 has state=finished
[2025-10-14 11:08:20] 2025-10-14 15:07:42,927 | INFO     | preparing for final server update for job 6832635562 in state='finished'
[2025-10-14 11:08:20] 2025-10-14 15:07:42,927 | INFO     | this job has now completed (state=finished)
[2025-10-14 11:08:20] 2025-10-14 15:07:42,928 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 11:08:20] 2025-10-14 15:07:42,928 | INFO     | log transfer has been attempted: DONE
[2025-10-14 11:08:20] 2025-10-14 15:07:42,928 | INFO     | job 6832635562 has finished - writing final server update
[2025-10-14 11:08:20] 2025-10-14 15:07:42,928 | INFO     | total number of processed events: 400 (read)
[2025-10-14 11:08:20] 2025-10-14 15:07:42,929 | INFO     | executing command: lscpu
[2025-10-14 11:08:20] 2025-10-14 15:07:42,957 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 11:08:20] 2025-10-14 15:07:43,306 | INFO     | monitor loop #287: job 0:6832635562 is in state 'finished'
[2025-10-14 11:08:20] 2025-10-14 15:07:43,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 11:08:20] 2025-10-14 15:07:44,865 | INFO     | time since job start (3826s) is within the limit (172800.0s)
[2025-10-14 11:08:20] 2025-10-14 15:07:45,810 | INFO     | monitor loop #288: job 0:6832635562 is in state 'finished'
[2025-10-14 11:08:20] 2025-10-14 15:07:45,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 11:08:20] 2025-10-14 15:07:46,870 | INFO     | time since job start (3828s) is within the limit (172800.0s)
[2025-10-14 11:08:20] 2025-10-14 15:07:47,708 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-14 11:08:20] 2025-10-14 15:07:47,711 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-14 11:08:20] 2025-10-14 15:07:47,714 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832635562/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 11:08:20] 2025-10-14 15:07:47,715 | INFO     | extracted standard info from prmon json
[2025-10-14 11:08:20] 2025-10-14 15:07:47,715 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 11:08:20] 2025-10-14 15:07:47,715 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 11:08:20] 2025-10-14 15:07:47,716 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 11:08:20] 2025-10-14 15:07:47,716 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 11:08:20] 2025-10-14 15:07:47,718 | INFO     | fitting pss+swap vs Time
[2025-10-14 11:08:20] 2025-10-14 15:07:47,718 | INFO     | sum of square deviations: 54438230.0
[2025-10-14 11:08:20] 2025-10-14 15:07:47,718 | INFO     | sum of deviations: 43971117.99999999
[2025-10-14 11:08:20] 2025-10-14 15:07:47,718 | INFO     | mean x: 1760452649.5
[2025-10-14 11:08:20] 2025-10-14 15:07:47,718 | INFO     | mean y: 2667610.785714286
[2025-10-14 11:08:20] 2025-10-14 15:07:47,719 | INFO     | -- intersect: -1419293962.6265204
[2025-10-14 11:08:20] 2025-10-14 15:07:47,719 | INFO     | intersect: -1419293962.6265204
[2025-10-14 11:08:20] 2025-10-14 15:07:47,719 | INFO     | chi2: 0.0032383644310296925
[2025-10-14 11:08:20] 2025-10-14 15:07:47,719 | INFO     | -- intersect: -1419293962.6265204
[2025-10-14 11:08:20] 2025-10-14 15:07:47,719 | INFO     | current memory leak: 0.81 B/s (using 56 data points, chi2=0.00)
[2025-10-14 11:08:20] 2025-10-14 15:07:47,719 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-10-14 11:08:20] 2025-10-14 15:07:47,720 | INFO     | ..............................
[2025-10-14 11:08:20] 2025-10-14 15:07:47,720 | INFO     | . Timing measurements:
[2025-10-14 11:08:20] 2025-10-14 15:07:47,720 | INFO     | . get job = 0 s
[2025-10-14 11:08:20] 2025-10-14 15:07:47,720 | INFO     | . initial setup = 2 s
[2025-10-14 11:08:20] 2025-10-14 15:07:47,720 | INFO     | . payload setup = 7 s
[2025-10-14 11:08:20] 2025-10-14 15:07:47,720 | INFO     | . stage-in = 0 s
[2025-10-14 11:08:20] 2025-10-14 15:07:47,720 | INFO     | . payload execution = 3791 s
[2025-10-14 11:08:20] 2025-10-14 15:07:47,720 | INFO     | . stage-out = 0 s
[2025-10-14 11:08:20] 2025-10-14 15:07:47,721 | INFO     | . log creation = 0 s
[2025-10-14 11:08:20] 2025-10-14 15:07:47,721 | INFO     | ..............................
[2025-10-14 11:08:20] 2025-10-14 15:07:47,803 | INFO     | 
[2025-10-14 11:08:20] 2025-10-14 15:07:47,803 | INFO     | job summary report
[2025-10-14 11:08:20] 2025-10-14 15:07:47,803 | INFO     | --------------------------------------------------
[2025-10-14 11:08:20] 2025-10-14 15:07:47,803 | INFO     | PanDA job id: 6832635562
[2025-10-14 11:08:20] 2025-10-14 15:07:47,803 | INFO     | task id: 46376905
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | errors: (none)
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | pilot state: finished 
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | transexitcode: 0
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | exeerrorcode: 0
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | exeerrordiag: 
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | exitcode: 0
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | exitmsg: OK
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | cpuconsumptiontime: 40691 s
[2025-10-14 11:08:20] 2025-10-14 15:07:47,804 | INFO     | nevents: 400
[2025-10-14 11:08:20] 2025-10-14 15:07:47,805 | INFO     | neventsw: 0
[2025-10-14 11:08:20] 2025-10-14 15:07:47,805 | INFO     | pid: 10425
[2025-10-14 11:08:20] 2025-10-14 15:07:47,805 | INFO     | pgrp: 10425
[2025-10-14 11:08:20] 2025-10-14 15:07:47,805 | INFO     | corecount: 12
[2025-10-14 11:08:20] 2025-10-14 15:07:47,805 | INFO     | event service: False
[2025-10-14 11:08:20] 2025-10-14 15:07:47,805 | INFO     | sizes: {0: 2348713, 1: 2348912, 6: 2349174, 12: 2349202, 3802: 2374959, 3804: 2383957, 3806: 2384141, 3814: 2384335}
[2025-10-14 11:08:20] 2025-10-14 15:07:47,805 | INFO     | --------------------------------------------------
[2025-10-14 11:08:20] 2025-10-14 15:07:47,805 | INFO     | 
[2025-10-14 11:08:20] 2025-10-14 15:07:47,805 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-14 11:08:20] 2025-10-14 15:07:47,829 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,829 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,830 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,830 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,830 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,830 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,830 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,830 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,831 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,831 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,831 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,831 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,831 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,831 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,832 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,832 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,832 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 11:08:20] 2025-10-14 15:07:47,832 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,832 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 11:08:20] 2025-10-14 15:07:47,832 | INFO     | job 6832635562 has completed (purged errors)
[2025-10-14 11:08:20] 2025-10-14 15:07:47,833 | INFO     | overall cleanup function is called
[2025-10-14 11:08:20] 2025-10-14 15:07:48,841 | INFO     | --- collectZombieJob: --- 10, [10425]
[2025-10-14 11:08:20] 2025-10-14 15:07:48,841 | INFO     | zombie collector waiting for pid 10425
[2025-10-14 11:08:20] 2025-10-14 15:07:48,841 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 11:08:20] 2025-10-14 15:07:48,841 | INFO     | collected zombie processes
[2025-10-14 11:08:20] 2025-10-14 15:07:48,841 | INFO     | will attempt to kill all subprocesses of pid=10425
[2025-10-14 11:08:20] 2025-10-14 15:07:48,934 | INFO     | process IDs to be killed: [10425] (in reverse order)
[2025-10-14 11:08:20] 2025-10-14 15:07:48,985 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 11:08:20] 2025-10-14 15:07:48,985 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 11:08:20] 2025-10-14 15:07:48,989 | INFO     | did not find any defunct processes belonging to 10425
[2025-10-14 11:08:20] 2025-10-14 15:07:48,992 | INFO     | did not find any defunct processes belonging to 10425
[2025-10-14 11:08:20] 2025-10-14 15:07:48,992 | INFO     | ready for new job
[2025-10-14 11:08:20] 2025-10-14 15:07:48,992 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 11:08:20] 2025-10-14 15:07:48,993 | INFO     | ***************************************
[2025-10-14 11:08:20] 2025-10-14 15:07:48,994 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-14 11:08:20] 2025-10-14 15:07:48,994 | INFO     | ***************************************
[2025-10-14 11:08:20] 2025-10-14 15:07:48,994 | INFO     | 
[2025-10-14 11:08:20] 2025-10-14 15:07:48,995 | INFO     | architecture information:
[2025-10-14 11:08:20] 2025-10-14 15:07:48,995 | INFO     | executing command: cat /etc/os-release
[2025-10-14 11:08:20] 2025-10-14 15:07:49,010 | INFO     | cat /etc/os-release:
[2025-10-14 11:08:20] NAME="CentOS Linux"
[2025-10-14 11:08:20] VERSION="7 (Core)"
[2025-10-14 11:08:20] ID="centos"
[2025-10-14 11:08:20] ID_LIKE="rhel fedora"
[2025-10-14 11:08:20] VERSION_ID="7"
[2025-10-14 11:08:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 11:08:20] ANSI_COLOR="0;31"
[2025-10-14 11:08:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 11:08:20] HOME_URL="https://www.centos.org/"
[2025-10-14 11:08:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 11:08:20] 
[2025-10-14 11:08:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 11:08:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 11:08:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 11:08:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 11:08:20] 
[2025-10-14 11:08:20] 2025-10-14 15:07:49,010 | INFO     | ***************************************
[2025-10-14 11:08:20] 2025-10-14 15:07:49,512 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-14 11:08:20] 2025-10-14 15:07:49,530 | INFO     | sufficient remaining disk space (29394731008 B)
[2025-10-14 11:08:20] 2025-10-14 15:07:49,530 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 11:08:20] 2025-10-14 15:07:49,530 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 11:08:20] 2025-10-14 15:07:49,530 | INFO     | update_server=False
[2025-10-14 11:08:20] 2025-10-14 15:07:49,531 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 11:08:20] 2025-10-14 15:07:49,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 11:08:20] 2025-10-14 15:07:49,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 11:08:20] 2025-10-14 15:07:49,532 | INFO     | aborting loop
[2025-10-14 11:08:20] 2025-10-14 15:07:49,779 | INFO     | all data control threads have been joined
[2025-10-14 11:08:20] 2025-10-14 15:07:49,812 | INFO     | all job control threads have been joined
[2025-10-14 11:08:20] 2025-10-14 15:07:50,493 | INFO     | all payload control threads have been joined
[2025-10-14 11:08:20] 2025-10-14 15:07:50,536 | INFO     | [job] retrieve thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:50,537 | INFO     | [job] queue monitor thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:50,537 | INFO     | [job] job monitor thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:50,554 | INFO     | [payload] failed_post thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:50,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 11:08:20] 2025-10-14 15:07:50,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 11:08:20] 2025-10-14 15:07:50,785 | INFO     | [data] control thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:50,817 | INFO     | [job] control thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:51,242 | INFO     | [job] validate thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:51,497 | INFO     | [payload] control thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:51,499 | INFO     | [payload] validate_post thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:51,583 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:51,743 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:51,994 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:52,026 | INFO     | [data] copytool_in thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:52,690 | INFO     | [data] copytool_out thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:07:54,639 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:08:00,013 | INFO     | job.realtimelogging is not enabled
[2025-10-14 11:08:20] 2025-10-14 15:08:01,018 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 11:08:20] 2025-10-14 15:08:03,566 | INFO     | [monitor] cgroup control has ended
[2025-10-14 11:08:20] 2025-10-14 15:08:04,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139984199845696)>', '<ExcThread(monitor, started 139983746737920)>']
[2025-10-14 11:08:20] 2025-10-14 15:08:09,823 | INFO     | all workflow threads have been joined
[2025-10-14 11:08:20] 2025-10-14 15:08:09,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 11:08:20] 2025-10-14 15:08:09,824 | INFO     | traces error code: 0
[2025-10-14 11:08:20] 2025-10-14 15:08:09,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 11:08:20] 2025-10-14 15:08:20,068 | INFO     | PID=4013 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-14 11:08:20] 2025-10-14 15:08:20,069 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 11:08:20] 2025-10-14 15:08:20,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 11:08:20] 2025-10-14 15:08:20,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 11:08:20] 2025-10-14 15:08:20,069 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 11:08:20] 2025-10-14 15:08:20,070 | INFO     | [monitor] control thread has ended
[2025-10-14 11:08:20] 2025-10-14 15:08:20,164 [wrapper] ==== pilot stdout END ====
[2025-10-14 11:08:20] 2025-10-14 15:08:20,168 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 11:08:20] 2025-10-14 15:08:20,172 [wrapper] pilotpid: 4013
[2025-10-14 11:08:20] 2025-10-14 15:08:20,176 [wrapper] Pilot exit status: 0
[2025-10-14 11:08:20] 2025-10-14 15:08:20,193 [wrapper] pandaids: 6832635562
[2025-10-14 11:08:20] 2025-10-14 15:08:20,233 [wrapper] cleanup supervisor_pilot 21430 4014
[2025-10-14 11:08:20] 2025-10-14 15:08:20,237 [wrapper] Test setup, not cleaning
[2025-10-14 11:08:20] 2025-10-14 15:08:20,241 [wrapper] apfmon messages muted
[2025-10-14 11:08:20] 2025-10-14 15:08:20,245 [wrapper] ==== wrapper stdout END ====
[2025-10-14 11:08:20] 2025-10-14 15:08:20,249 [wrapper] ==== wrapper stderr END ====
[2025-10-14 11:08:20]  *** Error codes and diagnostics ***
[2025-10-14 11:08:20]     "exeErrorCode": 0,
[2025-10-14 11:08:20]     "exeErrorDiag": "",
[2025-10-14 11:08:20]     "pilotErrorCode": 0,
[2025-10-14 11:08:20]     "pilotErrorDiag": "",
[2025-10-14 11:08:20]  *** Listing of results directory ***
[2025-10-14 11:08:20] total 388988
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas    552446 Oct  6 07:51 pilot3.tar.gz
[2025-10-14 11:08:20] -rwx------ 1 boincer umatlas     36292 Oct  6 07:53 runpilot2-wrapper.sh
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas      5112 Oct  6 07:53 queuedata.json
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas       100 Oct 14 10:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 11:08:20] -rwxr-xr-x 1 boincer umatlas      7986 Oct 14 10:03 run_atlas
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas       105 Oct 14 10:03 job.xml
[2025-10-14 11:08:20] -rw-r--r-- 2 boincer umatlas 213668281 Oct 14 10:03 EVNT.46376901._004104.pool.root.1
[2025-10-14 11:08:20] -rw-r--r-- 2 boincer umatlas    565602 Oct 14 10:03 input.tar.gz
[2025-10-14 11:08:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 14 10:03 start_atlas.sh
[2025-10-14 11:08:20] drwxrwx--x 2 boincer umatlas      4096 Oct 14 10:03 shared
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas         0 Oct 14 10:03 boinc_lockfile
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas      2521 Oct 14 10:03 pandaJob.out
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas    973969 Oct 14 10:03 agis_schedconf.cvmfs.json
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas   1560740 Oct 14 10:03 agis_ddmendpoints.agis.ALL.json
[2025-10-14 11:08:20] drwx------ 4 boincer umatlas      4096 Oct 14 10:03 pilot3
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas      5952 Oct 14 11:03 init_data.xml
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas       529 Oct 14 11:07 boinc_task_state.xml
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas 178922030 Oct 14 11:07 HITS.46376905._110661.pool.root.1
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas      1048 Oct 14 11:07 memory_monitor_summary.json
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas    363150 Oct 14 11:07 log.46376905._110661.job.log.tgz.1
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas      7847 Oct 14 11:07 heartbeat.json
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas        95 Oct 14 11:07 pilot_heartbeat.json
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas      8192 Oct 14 11:08 boinc_mmap_file
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas        27 Oct 14 11:08 wrapper_checkpoint.txt
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas       744 Oct 14 11:08 pilotlog.txt
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas    562056 Oct 14 11:08 log.46376905._110661.job.log.1
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas       357 Oct 14 11:08 output.list
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas       620 Oct 14 11:08 runtime_log
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas    942080 Oct 14 11:08 result.tar.gz
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas       659 Oct 14 11:08 tDfLDmoxyP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQOTNDm4oLwfm.diag
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas      8700 Oct 14 11:08 runtime_log.err
[2025-10-14 11:08:20] -rw-r--r-- 1 boincer umatlas     22267 Oct 14 11:08 stderr.txt
[2025-10-14 11:08:20] HITS file was successfully produced:
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas 178922030 Oct 14 11:07 shared/HITS.pool.root.1
[2025-10-14 11:08:20]  *** Contents of shared directory: ***
[2025-10-14 11:08:20] total 384892
[2025-10-14 11:08:20] -rw-r--r-- 2 boincer umatlas 213668281 Oct 14 10:03 ATLAS.root_0
[2025-10-14 11:08:20] -rw-r--r-- 2 boincer umatlas    565602 Oct 14 10:03 input.tar.gz
[2025-10-14 11:08:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 14 10:03 start_atlas.sh
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas 178922030 Oct 14 11:07 HITS.pool.root.1
[2025-10-14 11:08:20] -rw------- 1 boincer umatlas    942080 Oct 14 11:08 result.tar.gz
11:08:22 (32530): run_atlas exited; CPU time 40665.906968
11:08:22 (32530): called boinc_finish(0)

</stderr_txt>
]]>

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