Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:04:18 (2718138): wrapper (7.7.26015): starting
06:04:18 (2718138): wrapper: running run_atlas (--nthreads 8)
[2025-10-14 06:04:18] Arguments: --nthreads 8
[2025-10-14 06:04:18] Threads: 8
[2025-10-14 06:04:18] Checking for CVMFS
[2025-10-14 06:04:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 06:04:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 06:04:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 06:04:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 06:04:18] 2.13.2.0 2021324 41497 186248 151692 2 193 18143779 25181184 1007 16776704 0 137975391 99.630 131386657 26185 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-14 06:04:18] CVMFS is ok
[2025-10-14 06:04:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 06:04:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 06:04:18] Further information can be found at the LHC@home message board.
[2025-10-14 06:04:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 06:04:18] Checking for apptainer binary...
[2025-10-14 06:04:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 06:04:18] Running /usr/bin/apptainer --version
[2025-10-14 06:04:18] apptainer version 1.4.3-1.el9
[2025-10-14 06:04:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 06:04:18] c-16-34.aglt2.org
[2025-10-14 06:04:18] apptainer works
[2025-10-14 06:04:18] Set ATHENA_PROC_NUMBER=8
[2025-10-14 06:04:18] Set ATHENA_CORE_NUMBER=8
[2025-10-14 06:04:18] Starting ATLAS job with PandaID=6844098090
[2025-10-14 06:04:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 07:28:39]  *** The last 200 lines of the pilot log: ***
[2025-10-14 07:28:39] 2025-10-14 11:27:31,631 | INFO     | time since job start (4985s) is within the limit (172800.0s)
[2025-10-14 07:28:39] 2025-10-14 11:27:32,726 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 07:28:39] 2025-10-14 11:27:33,636 | INFO     | time since job start (4987s) is within the limit (172800.0s)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,061 | WARNING  | process 2748075 can no longer be monitored (due to stat problems) - aborting
[2025-10-14 07:28:39] 2025-10-14 11:27:34,062 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6844098090/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,063 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6844098090/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,063 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-14 07:28:39] 2025-10-14 11:27:34,063 | WARNING  | maxPSS not found in memory monitor output
[2025-10-14 07:28:39] 2025-10-14 11:27:34,064 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3659732 B
[2025-10-14 07:28:39] 2025-10-14 11:27:34,064 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15783 B
[2025-10-14 07:28:39] 2025-10-14 11:27:34,064 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-14 07:28:39] 2025-10-14 11:27:34,073 | INFO     | sufficient remaining disk space (63035146240 B)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,073 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,074 | INFO     | size of work directory /tmp/boinchome/slots/3/PanDA_Pilot-6844098090: 3959908 B (within 2537553920 B limit)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,074 | INFO     | pfn file=/tmp/boinchome/slots/3/PanDA_Pilot-6844098090/HITS.46676269._097170.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,074 | INFO     | total size of present files: 0 B (workdir size: 3959908 B)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,074 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/3/PanDA_Pilot-6844098090/HITS.46676269._097170.pool.root.1 since it does not exist
[2025-10-14 07:28:39] 2025-10-14 11:27:34,236 | INFO     | number of running child processes to parent process 2748075: 1
[2025-10-14 07:28:39] 2025-10-14 11:27:34,236 | INFO     | maximum number of monitored processes: 6
[2025-10-14 07:28:39] 2025-10-14 11:27:34,591 | INFO     | job 6844098090 has state=finished
[2025-10-14 07:28:39] 2025-10-14 11:27:34,591 | INFO     | preparing for final server update for job 6844098090 in state='finished'
[2025-10-14 07:28:39] 2025-10-14 11:27:34,592 | INFO     | this job has now completed (state=finished)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,592 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,592 | INFO     | log transfer has been attempted: DONE
[2025-10-14 07:28:39] 2025-10-14 11:27:34,592 | INFO     | job 6844098090 has finished - writing final server update
[2025-10-14 07:28:39] 2025-10-14 11:27:34,592 | INFO     | total number of processed events: 400 (read)
[2025-10-14 07:28:39] 2025-10-14 11:27:34,593 | INFO     | executing command: lscpu
[2025-10-14 07:28:39] 2025-10-14 11:27:34,634 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 07:28:39] 2025-10-14 11:27:34,871 | INFO     | PID=2728772 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 07:28:39] 2025-10-14 11:27:34,871 | INFO     | .. there are 4 such processes running
[2025-10-14 07:28:39] 2025-10-14 11:27:35,872 | INFO     | time since job start (4989s) is within the limit (172800.0s)
[2025-10-14 07:28:39] 2025-10-14 11:27:36,739 | INFO     | monitor loop #369: job 0:6844098090 is in state 'finished'
[2025-10-14 07:28:39] 2025-10-14 11:27:36,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 07:28:39] 2025-10-14 11:27:37,182 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 07:28:39] 2025-10-14 11:27:37,187 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 3206.272166666667
[2025-10-14 07:28:39] 2025-10-14 11:27:37,192 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6844098090/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 07:28:39] 2025-10-14 11:27:37,192 | INFO     | extracted standard info from prmon json
[2025-10-14 07:28:39] 2025-10-14 11:27:37,192 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 07:28:39] 2025-10-14 11:27:37,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 07:28:39] 2025-10-14 11:27:37,192 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 07:28:39] 2025-10-14 11:27:37,192 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 07:28:39] 2025-10-14 11:27:37,194 | INFO     | fitting pss+swap vs Time
[2025-10-14 07:28:39] 2025-10-14 11:27:37,194 | INFO     | sum of square deviations: 130793150.0
[2025-10-14 07:28:39] 2025-10-14 11:27:37,194 | INFO     | sum of deviations: 1146538615.0
[2025-10-14 07:28:39] 2025-10-14 11:27:37,194 | INFO     | mean x: 1760438848.0
[2025-10-14 07:28:39] 2025-10-14 11:27:37,194 | INFO     | mean y: 2170249.2533333334
[2025-10-14 07:28:39] 2025-10-14 11:27:37,194 | INFO     | -- intersect: -15429915594.524534
[2025-10-14 07:28:39] 2025-10-14 11:27:37,194 | INFO     | intersect: -15429915594.524534
[2025-10-14 07:28:39] 2025-10-14 11:27:37,194 | INFO     | chi2: 0.02360940892860861
[2025-10-14 07:28:39] 2025-10-14 11:27:37,194 | INFO     | -- intersect: -15429915594.524534
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | current memory leak: 8.77 B/s (using 75 data points, chi2=0.02)
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | could have reported an average CPU frequency of 3136 MHz (6 samples)
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | ..............................
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | . Timing measurements:
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | . get job = 0 s
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | . initial setup = 2 s
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | . payload setup = 3 s
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | . stage-in = 0 s
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | . payload execution = 4963 s
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | . stage-out = 0 s
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | . log creation = 0 s
[2025-10-14 07:28:39] 2025-10-14 11:27:37,195 | INFO     | ..............................
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | 
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | job summary report
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | --------------------------------------------------
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | PanDA job id: 6844098090
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | task id: 46676269
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | errors: (none)
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | pilot state: finished 
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | transexitcode: 0
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | exeerrorcode: 0
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | exeerrordiag: 
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | exitcode: 0
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | exitmsg: OK
[2025-10-14 07:28:39] 2025-10-14 11:27:37,421 | INFO     | cpuconsumptiontime: 37158 s
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | nevents: 400
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | neventsw: 0
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | pid: 2748075
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | pgrp: 2748075
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | corecount: 8
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | event service: False
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 4970: 2375475, 4971: 2384528, 4974: 2384528, 4978: 2384878}
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | --------------------------------------------------
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | 
[2025-10-14 07:28:39] 2025-10-14 11:27:37,422 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-14 07:28:39] 2025-10-14 11:27:37,433 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,433 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 07:28:39] 2025-10-14 11:27:37,434 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,435 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 07:28:39] 2025-10-14 11:27:37,435 | INFO     | job 6844098090 has completed (purged errors)
[2025-10-14 07:28:39] 2025-10-14 11:27:37,435 | INFO     | overall cleanup function is called
[2025-10-14 07:28:39] 2025-10-14 11:27:38,442 | INFO     | --- collectZombieJob: --- 10, [2748075]
[2025-10-14 07:28:39] 2025-10-14 11:27:38,442 | INFO     | zombie collector waiting for pid 2748075
[2025-10-14 07:28:39] 2025-10-14 11:27:38,442 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 07:28:39] 2025-10-14 11:27:38,442 | INFO     | collected zombie processes
[2025-10-14 07:28:39] 2025-10-14 11:27:38,442 | INFO     | will attempt to kill all subprocesses of pid=2748075
[2025-10-14 07:28:39] 2025-10-14 11:27:38,604 | INFO     | process IDs to be killed: [2748075] (in reverse order)
[2025-10-14 07:28:39] 2025-10-14 11:27:38,648 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 07:28:39] 2025-10-14 11:27:38,649 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 07:28:39] 2025-10-14 11:27:38,653 | INFO     | did not find any defunct processes belonging to 2748075
[2025-10-14 07:28:39] 2025-10-14 11:27:38,656 | INFO     | did not find any defunct processes belonging to 2748075
[2025-10-14 07:28:39] 2025-10-14 11:27:38,657 | INFO     | ready for new job
[2025-10-14 07:28:39] 2025-10-14 11:27:38,657 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 07:28:39] 2025-10-14 11:27:38,658 | INFO     | ***************************************
[2025-10-14 07:28:39] 2025-10-14 11:27:38,658 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 07:28:39] 2025-10-14 11:27:38,658 | INFO     | ***************************************
[2025-10-14 07:28:39] 2025-10-14 11:27:38,658 | INFO     | 
[2025-10-14 07:28:39] 2025-10-14 11:27:38,671 | INFO     | architecture information:
[2025-10-14 07:28:39] 2025-10-14 11:27:38,672 | INFO     | executing command: cat /etc/os-release
[2025-10-14 07:28:39] 2025-10-14 11:27:38,679 | INFO     | cat /etc/os-release:
[2025-10-14 07:28:39] NAME="CentOS Linux"
[2025-10-14 07:28:39] VERSION="7 (Core)"
[2025-10-14 07:28:39] ID="centos"
[2025-10-14 07:28:39] ID_LIKE="rhel fedora"
[2025-10-14 07:28:39] VERSION_ID="7"
[2025-10-14 07:28:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 07:28:39] ANSI_COLOR="0;31"
[2025-10-14 07:28:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 07:28:39] HOME_URL="https://www.centos.org/"
[2025-10-14 07:28:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 07:28:39] 
[2025-10-14 07:28:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 07:28:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 07:28:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 07:28:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 07:28:39] 
[2025-10-14 07:28:39] 2025-10-14 11:27:38,679 | INFO     | ***************************************
[2025-10-14 07:28:39] 2025-10-14 11:27:39,182 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-14 07:28:39] 2025-10-14 11:27:39,192 | INFO     | sufficient remaining disk space (63039340544 B)
[2025-10-14 07:28:39] 2025-10-14 11:27:39,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 07:28:39] 2025-10-14 11:27:39,193 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 07:28:39] 2025-10-14 11:27:39,193 | INFO     | update_server=False
[2025-10-14 07:28:39] 2025-10-14 11:27:39,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 07:28:39] 2025-10-14 11:27:39,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 07:28:39] 2025-10-14 11:27:39,193 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 07:28:39] 2025-10-14 11:27:39,194 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 07:28:39] 2025-10-14 11:27:39,198 | INFO     | all data control threads have been joined
[2025-10-14 07:28:39] 2025-10-14 11:27:39,242 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-14 07:28:39] 2025-10-14 11:27:39,242 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-14 07:28:39] 2025-10-14 11:27:39,242 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 07:28:39] 2025-10-14 11:27:39,242 | INFO     | will abort loop
[2025-10-14 07:28:39] 2025-10-14 11:27:39,265 | INFO     | all job control threads have been joined
[2025-10-14 07:28:39] 2025-10-14 11:27:39,577 | INFO     | all payload control threads have been joined
[2025-10-14 07:28:39] 2025-10-14 11:27:40,198 | INFO     | [job] retrieve thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:40,199 | INFO     | [job] queue monitor thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:40,203 | INFO     | [data] control thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:40,247 | INFO     | [job] job monitor thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:40,270 | INFO     | [job] control thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:40,288 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:40,419 | INFO     | [payload] validate_post thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:40,578 | INFO     | [payload] control thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:40,694 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:41,199 | INFO     | [data] copytool_out thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:41,343 | INFO     | [job] validate thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:41,385 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:41,404 | INFO     | [data] copytool_in thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:41,533 | INFO     | [payload] failed_post thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:43,199 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:27:49,903 | INFO     | job.realtimelogging is not enabled
[2025-10-14 07:28:39] 2025-10-14 11:27:50,908 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 07:28:39] 2025-10-14 11:28:09,168 | INFO     | PID=2728772 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 07:28:39] 2025-10-14 11:28:09,168 | INFO     | .. there are 4 such processes running
[2025-10-14 07:28:39] 2025-10-14 11:28:09,169 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 07:28:39] 2025-10-14 11:28:09,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 07:28:39] 2025-10-14 11:28:09,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 07:28:39] 2025-10-14 11:28:32,464 | INFO     | [monitor] cgroup control has ended
[2025-10-14 07:28:39] 2025-10-14 11:28:34,439 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114241713984)>', '<ExcThread(monitor, started 140113745000192)>']
[2025-10-14 07:28:39] 2025-10-14 11:28:35,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 07:28:39] 2025-10-14 11:28:35,294 | INFO     | [monitor] control thread has ended
[2025-10-14 07:28:39] 2025-10-14 11:28:39,464 | INFO     | all workflow threads have been joined
[2025-10-14 07:28:39] 2025-10-14 11:28:39,465 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 07:28:39] 2025-10-14 11:28:39,465 | INFO     | traces error code: 0
[2025-10-14 07:28:39] 2025-10-14 11:28:39,465 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 07:28:39] 2025-10-14 11:28:39,532 [wrapper] ==== pilot stdout END ====
[2025-10-14 07:28:39] 2025-10-14 11:28:39,534 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 07:28:39] 2025-10-14 11:28:39,535 [wrapper] pilotpid: 2728772
[2025-10-14 07:28:39] 2025-10-14 11:28:39,537 [wrapper] Pilot exit status: 0
[2025-10-14 07:28:39] 2025-10-14 11:28:39,543 [wrapper] pandaids: 6844098090
[2025-10-14 07:28:39] 2025-10-14 11:28:39,574 [wrapper] cleanup supervisor_pilot 2898875 2728774
[2025-10-14 07:28:39] 2025-10-14 11:28:39,576 [wrapper] Test setup, not cleaning
[2025-10-14 07:28:39] 2025-10-14 11:28:39,578 [wrapper] apfmon messages muted
[2025-10-14 07:28:39] 2025-10-14 11:28:39,580 [wrapper] ==== wrapper stdout END ====
[2025-10-14 07:28:39] 2025-10-14 11:28:39,581 [wrapper] ==== wrapper stderr END ====
[2025-10-14 07:28:39]  *** Error codes and diagnostics ***
[2025-10-14 07:28:39]     "exeErrorCode": 0,
[2025-10-14 07:28:39]     "exeErrorDiag": "",
[2025-10-14 07:28:39]     "pilotErrorCode": 0,
[2025-10-14 07:28:39]     "pilotErrorDiag": "",
[2025-10-14 07:28:39]  *** Listing of results directory ***
[2025-10-14 07:28:39] total 426276
[2025-10-14 07:28:39] -rwx------. 1 boincer umatlas     36292 Oct 14 06:03 runpilot2-wrapper.sh
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas      5112 Oct 14 06:03 queuedata.json
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas    557409 Oct 14 06:03 pilot3.tar.gz
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas       100 Oct 14 06:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 07:28:39] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 14 06:04 run_atlas
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas       105 Oct 14 06:04 job.xml
[2025-10-14 07:28:39] -rw-r--r--. 2 boincer umatlas 221327724 Oct 14 06:04 EVNT.46676267._002513.pool.root.1
[2025-10-14 07:28:39] -rw-r--r--. 2 boincer umatlas    569677 Oct 14 06:04 input.tar.gz
[2025-10-14 07:28:39] -rw-r--r--. 2 boincer umatlas     15120 Oct 14 06:04 start_atlas.sh
[2025-10-14 07:28:39] drwxrwx--x. 2 boincer umatlas      4096 Oct 14 06:04 shared
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas         0 Oct 14 06:04 boinc_lockfile
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas      2550 Oct 14 06:04 pandaJob.out
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas    972837 Oct 14 06:04 agis_schedconf.cvmfs.json
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas   1560580 Oct 14 06:04 agis_ddmendpoints.agis.ALL.json
[2025-10-14 07:28:39] drwx------. 5 boincer umatlas      4096 Oct 14 06:04 pilot3
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas      6614 Oct 14 07:22 init_data.xml
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas 209124396 Oct 14 07:27 HITS.46676269._097170.pool.root.1
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas       529 Oct 14 07:27 boinc_task_state.xml
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas      1031 Oct 14 07:27 memory_monitor_summary.json
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas    344450 Oct 14 07:27 log.46676269._097170.job.log.tgz.1
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas      7810 Oct 14 07:27 heartbeat.json
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas        95 Oct 14 07:28 pilot_heartbeat.json
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas        27 Oct 14 07:28 wrapper_checkpoint.txt
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas      8192 Oct 14 07:28 boinc_mmap_file
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas      5081 Oct 14 07:28 pilotlog.txt
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas    730007 Oct 14 07:28 log.46676269._097170.job.log.1
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas       357 Oct 14 07:28 output.list
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas       620 Oct 14 07:28 runtime_log
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas   1095680 Oct 14 07:28 result.tar.gz
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas      8698 Oct 14 07:28 runtime_log.err
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas       649 Oct 14 07:28 GhpLDm52qS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDrmNDmB3eEim.diag
[2025-10-14 07:28:39] -rw-r--r--. 1 boincer umatlas     22467 Oct 14 07:28 stderr.txt
[2025-10-14 07:28:39] HITS file was successfully produced:
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas 209124396 Oct 14 07:27 shared/HITS.pool.root.1
[2025-10-14 07:28:39]  *** Contents of shared directory: ***
[2025-10-14 07:28:39] total 422020
[2025-10-14 07:28:39] -rw-r--r--. 2 boincer umatlas 221327724 Oct 14 06:04 ATLAS.root_0
[2025-10-14 07:28:39] -rw-r--r--. 2 boincer umatlas    569677 Oct 14 06:04 input.tar.gz
[2025-10-14 07:28:39] -rw-r--r--. 2 boincer umatlas     15120 Oct 14 06:04 start_atlas.sh
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas 209124396 Oct 14 07:27 HITS.pool.root.1
[2025-10-14 07:28:39] -rw-------. 1 boincer umatlas   1095680 Oct 14 07:28 result.tar.gz
07:28:41 (2718138): run_atlas exited; CPU time 37331.968516
07:28:41 (2718138): called boinc_finish(0)

</stderr_txt>
]]>

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