Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:49:41 (2221371): wrapper (7.7.26015): starting
05:49:41 (2221371): wrapper: running run_atlas (--nthreads 8)
[2025-10-14 05:49:41] Arguments: --nthreads 8
[2025-10-14 05:49:41] Threads: 8
[2025-10-14 05:49:41] Checking for CVMFS
[2025-10-14 05:49:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 05:49:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 05:49:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 05:49:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 05:49:41] 2.13.2.0 1630706 126533 159400 151692 2 178 39666828 40960000 18156 16776704 1 358518008 99.725 257743072 33908 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-14 05:49:41] CVMFS is ok
[2025-10-14 05:49:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 05:49:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 05:49:41] Further information can be found at the LHC@home message board.
[2025-10-14 05:49:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 05:49:41] Checking for apptainer binary...
[2025-10-14 05:49:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 05:49:41] Running /usr/bin/apptainer --version
[2025-10-14 05:49:41] apptainer version 1.4.3-1.el9
[2025-10-14 05:49:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 05:49:41] c-212-16.aglt2.org
[2025-10-14 05:49:41] apptainer works
[2025-10-14 05:49:41] Set ATHENA_PROC_NUMBER=8
[2025-10-14 05:49:41] Set ATHENA_CORE_NUMBER=8
[2025-10-14 05:49:41] Starting ATLAS job with PandaID=6840711573
[2025-10-14 05:49:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 07:07:19]  *** The last 200 lines of the pilot log: ***
[2025-10-14 07:07:19]  scope=mc23_13p6TeV
[2025-10-14 07:07:19]  status=None
[2025-10-14 07:07:19]  status_code=0
[2025-10-14 07:07:19]  storage_token=
[2025-10-14 07:07:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840711573/log.46676269._087141.job.log.tgz.1
[2025-10-14 07:07:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/a9/log.46676269._087141.job.log.tgz.1
[2025-10-14 07:07:19]  workdir=None
[2025-10-14 07:07:19] ]
[2025-10-14 07:07:19] 2025-10-14 11:06:40,232 | INFO     | transferring file log.46676269._087141.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840711573/log.46676269._087141.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-14 07:07:19] 2025-10-14 11:06:40,233 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840711573/log.46676269._087141.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._087141.job
[2025-10-14 07:07:19] 2025-10-14 11:06:40,254 | INFO     | adding to output.list: log.46676269._087141.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/a9/log.46676269._087141.job.log.tg
[2025-10-14 07:07:19] 2025-10-14 11:06:40,255 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-14 07:07:19] 2025-10-14 11:06:40,255 | INFO     | summary of transferred files:
[2025-10-14 07:07:19] 2025-10-14 11:06:40,255 | INFO     |  -- lfn=log.46676269._087141.job.log.tgz.1, status_code=0, status=transferred
[2025-10-14 07:07:19] 2025-10-14 11:06:40,255 | INFO     | stage-out finished correctly
[2025-10-14 07:07:19] 2025-10-14 11:06:41,578 | INFO     | time since job start (4608s) is within the limit (172800.0s)
[2025-10-14 07:07:19] 2025-10-14 11:06:41,673 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 07:07:19] 2025-10-14 11:06:42,396 | INFO     | job 6840711573 has state=finished
[2025-10-14 07:07:19] 2025-10-14 11:06:42,396 | INFO     | preparing for final server update for job 6840711573 in state='finished'
[2025-10-14 07:07:19] 2025-10-14 11:06:42,456 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-14 07:07:19] 2025-10-14 11:06:42,457 | INFO     | this job has now completed (state=finished)
[2025-10-14 07:07:19] 2025-10-14 11:06:42,457 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 07:07:19] 2025-10-14 11:06:42,457 | INFO     | log transfer has been attempted: DONE
[2025-10-14 07:07:19] 2025-10-14 11:06:42,457 | INFO     | job 6840711573 has finished - writing final server update
[2025-10-14 07:07:19] 2025-10-14 11:06:42,457 | INFO     | total number of processed events: 400 (read)
[2025-10-14 07:07:19] 2025-10-14 11:06:42,458 | INFO     | executing command: lscpu
[2025-10-14 07:07:19] 2025-10-14 11:06:42,526 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 07:07:19] 2025-10-14 11:06:43,583 | INFO     | time since job start (4610s) is within the limit (172800.0s)
[2025-10-14 07:07:19] 2025-10-14 11:06:45,145 | WARNING  | process 2238960 can no longer be monitored (due to stat problems) - aborting
[2025-10-14 07:07:19] 2025-10-14 11:06:45,145 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840711573/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 07:07:19] 2025-10-14 11:06:45,146 | INFO     | reaping zombies for max 20 seconds
[2025-10-14 07:07:19] 2025-10-14 11:06:45,161 | INFO     | checking for looping job (in state=finished)
[2025-10-14 07:07:19] 2025-10-14 11:06:45,161 | INFO     | using looping job limit: 7200 s
[2025-10-14 07:07:19] 2025-10-14 11:06:45,476 | INFO     | number of running child processes to parent process 2238960: 1
[2025-10-14 07:07:19] 2025-10-14 11:06:45,476 | INFO     | maximum number of monitored processes: 6
[2025-10-14 07:07:19] 2025-10-14 11:06:45,588 | INFO     | time since job start (4612s) is within the limit (172800.0s)
[2025-10-14 07:07:19] 2025-10-14 11:06:46,664 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 07:07:19] 2025-10-14 11:06:46,676 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3287.3008645833343
[2025-10-14 07:07:19] 2025-10-14 11:06:46,689 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840711573/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 07:07:19] 2025-10-14 11:06:46,690 | INFO     | extracted standard info from prmon json
[2025-10-14 07:07:19] 2025-10-14 11:06:46,690 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 07:07:19] 2025-10-14 11:06:46,690 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 07:07:19] 2025-10-14 11:06:46,690 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 07:07:19] 2025-10-14 11:06:46,691 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 07:07:19] 2025-10-14 11:06:46,693 | INFO     | fitting pss+swap vs Time
[2025-10-14 07:07:19] 2025-10-14 11:06:46,693 | INFO     | sum of square deviations: 101843770.0
[2025-10-14 07:07:19] 2025-10-14 11:06:46,693 | INFO     | sum of deviations: -4232577476.0
[2025-10-14 07:07:19] 2025-10-14 11:06:46,693 | INFO     | mean x: 1760437798.0
[2025-10-14 07:07:19] 2025-10-14 11:06:46,694 | INFO     | mean y: 2570167.927536232
[2025-10-14 07:07:19] 2025-10-14 11:06:46,694 | INFO     | -- intersect: 73165507593.69092
[2025-10-14 07:07:19] 2025-10-14 11:06:46,694 | INFO     | intersect: 73165507593.69092
[2025-10-14 07:07:19] 2025-10-14 11:06:46,694 | INFO     | chi2: 0.037744141122019556
[2025-10-14 07:07:19] 2025-10-14 11:06:46,694 | INFO     | -- intersect: 73165507593.69092
[2025-10-14 07:07:19] 2025-10-14 11:06:46,694 | INFO     | current memory leak: -41.56 B/s (using 69 data points, chi2=0.04)
[2025-10-14 07:07:19] 2025-10-14 11:06:46,694 | INFO     | could have reported an average CPU frequency of 3188 MHz (6 samples)
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | ..............................
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | . Timing measurements:
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | . get job = 0 s
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | . initial setup = 2 s
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | . payload setup = 6 s
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | . stage-in = 0 s
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | . payload execution = 4581 s
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | . stage-out = 0 s
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | . log creation = 0 s
[2025-10-14 07:07:19] 2025-10-14 11:06:46,695 | INFO     | ..............................
[2025-10-14 07:07:19] 2025-10-14 11:06:46,773 | INFO     | 
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | job summary report
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | --------------------------------------------------
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | PanDA job id: 6840711573
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | task id: 46676269
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | errors: (none)
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | pilot state: finished 
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | transexitcode: 0
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | exeerrorcode: 0
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | exeerrordiag: 
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | exitcode: 0
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | exitmsg: OK
[2025-10-14 07:07:19] 2025-10-14 11:06:46,774 | INFO     | cpuconsumptiontime: 31282 s
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | nevents: 400
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | neventsw: 0
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | pid: 2238960
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | pgrp: 2238960
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | corecount: 8
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | event service: False
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | sizes: {0: 2348807, 4: 2349069, 11: 2349097, 4590: 2375375, 4591: 2384373, 4593: 2384429, 4598: 2384751}
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | --------------------------------------------------
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | 
[2025-10-14 07:07:19] 2025-10-14 11:06:46,775 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,795 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | job 6840711573 has completed (purged errors)
[2025-10-14 07:07:19] 2025-10-14 11:06:46,796 | INFO     | overall cleanup function is called
[2025-10-14 07:07:19] 2025-10-14 11:06:47,804 | INFO     | --- collectZombieJob: --- 10, [2238960]
[2025-10-14 07:07:19] 2025-10-14 11:06:47,804 | INFO     | zombie collector waiting for pid 2238960
[2025-10-14 07:07:19] 2025-10-14 11:06:47,804 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 07:07:19] 2025-10-14 11:06:47,805 | INFO     | collected zombie processes
[2025-10-14 07:07:19] 2025-10-14 11:06:47,805 | INFO     | will attempt to kill all subprocesses of pid=2238960
[2025-10-14 07:07:19] 2025-10-14 11:06:48,147 | INFO     | process IDs to be killed: [2238960] (in reverse order)
[2025-10-14 07:07:19] 2025-10-14 11:06:48,267 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 07:07:19] 2025-10-14 11:06:48,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 07:07:19] 2025-10-14 11:06:48,282 | INFO     | did not find any defunct processes belonging to 2238960
[2025-10-14 07:07:19] 2025-10-14 11:06:48,295 | INFO     | did not find any defunct processes belonging to 2238960
[2025-10-14 07:07:19] 2025-10-14 11:06:48,295 | INFO     | ready for new job
[2025-10-14 07:07:19] 2025-10-14 11:06:48,296 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 07:07:19] 2025-10-14 11:06:48,297 | INFO     | ***************************************
[2025-10-14 07:07:19] 2025-10-14 11:06:48,297 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 07:07:19] 2025-10-14 11:06:48,297 | INFO     | ***************************************
[2025-10-14 07:07:19] 2025-10-14 11:06:48,297 | INFO     | 
[2025-10-14 07:07:19] 2025-10-14 11:06:48,302 | INFO     | architecture information:
[2025-10-14 07:07:19] 2025-10-14 11:06:48,302 | INFO     | executing command: cat /etc/os-release
[2025-10-14 07:07:19] 2025-10-14 11:06:48,318 | INFO     | cat /etc/os-release:
[2025-10-14 07:07:19] NAME="CentOS Linux"
[2025-10-14 07:07:19] VERSION="7 (Core)"
[2025-10-14 07:07:19] ID="centos"
[2025-10-14 07:07:19] ID_LIKE="rhel fedora"
[2025-10-14 07:07:19] VERSION_ID="7"
[2025-10-14 07:07:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 07:07:19] ANSI_COLOR="0;31"
[2025-10-14 07:07:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 07:07:19] HOME_URL="https://www.centos.org/"
[2025-10-14 07:07:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 07:07:19] 
[2025-10-14 07:07:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 07:07:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 07:07:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 07:07:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 07:07:19] 
[2025-10-14 07:07:19] 2025-10-14 11:06:48,319 | INFO     | ***************************************
[2025-10-14 07:07:19] 2025-10-14 11:06:48,821 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-14 07:07:19] 2025-10-14 11:06:48,835 | INFO     | sufficient remaining disk space (129408958464 B)
[2025-10-14 07:07:19] 2025-10-14 11:06:48,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 07:07:19] 2025-10-14 11:06:48,835 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 07:07:19] 2025-10-14 11:06:48,835 | INFO     | update_server=False
[2025-10-14 07:07:19] 2025-10-14 11:06:48,835 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 07:07:19] 2025-10-14 11:06:48,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 07:07:19] 2025-10-14 11:06:48,984 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 07:07:19] 2025-10-14 11:06:48,984 | INFO     | aborting loop
[2025-10-14 07:07:19] 2025-10-14 11:06:49,475 | INFO     | all data control threads have been joined
[2025-10-14 07:07:19] 2025-10-14 11:06:49,840 | INFO     | [job] retrieve thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:49,990 | INFO     | [job] job monitor thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,068 | INFO     | all payload control threads have been joined
[2025-10-14 07:07:19] 2025-10-14 11:06:50,140 | INFO     | [payload] validate_post thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,158 | INFO     | [payload] failed_post thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,240 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,313 | INFO     | all job control threads have been joined
[2025-10-14 07:07:19] 2025-10-14 11:06:50,480 | INFO     | [data] control thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,812 | INFO     | [data] copytool_in thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,841 | INFO     | [data] copytool_out thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,882 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,929 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,973 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:50,998 | INFO     | [job] validate thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:51,074 | INFO     | [payload] control thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:51,318 | INFO     | [job] control thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:51,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 07:07:19] 2025-10-14 11:06:52,243 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 07:07:19] 2025-10-14 11:06:52,788 | INFO     | [job] queue monitor thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:06:56,249 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 07:07:19] 2025-10-14 11:07:00,723 | INFO     | [monitor] cgroup control has ended
[2025-10-14 07:07:19] 2025-10-14 11:07:02,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140621494404928)>', '<ExcThread(monitor, started 140620777645824)>']
[2025-10-14 07:07:19] 2025-10-14 11:07:07,406 | INFO     | all workflow threads have been joined
[2025-10-14 07:07:19] 2025-10-14 11:07:07,408 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 07:07:19] 2025-10-14 11:07:07,409 | INFO     | traces error code: 0
[2025-10-14 07:07:19] 2025-10-14 11:07:07,409 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 07:07:19] 2025-10-14 11:07:19,090 | INFO     | PID=2225297 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 07:07:19] 2025-10-14 11:07:19,090 | INFO     | .. there are 14 such processes running
[2025-10-14 07:07:19] 2025-10-14 11:07:19,090 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 07:07:19] 2025-10-14 11:07:19,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 07:07:19] 2025-10-14 11:07:19,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 07:07:19] 2025-10-14 11:07:19,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 07:07:19] 2025-10-14 11:07:19,091 | INFO     | [monitor] control thread has ended
[2025-10-14 07:07:19] 2025-10-14 11:07:19,258 [wrapper] ==== pilot stdout END ====
[2025-10-14 07:07:19] 2025-10-14 11:07:19,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 07:07:19] 2025-10-14 11:07:19,263 [wrapper] pilotpid: 2225297
[2025-10-14 07:07:19] 2025-10-14 11:07:19,266 [wrapper] Pilot exit status: 0
[2025-10-14 07:07:19] 2025-10-14 11:07:19,274 [wrapper] pandaids: 6840711573
[2025-10-14 07:07:19] 2025-10-14 11:07:19,350 [wrapper] cleanup supervisor_pilot 2580680 2225298
[2025-10-14 07:07:19] 2025-10-14 11:07:19,353 [wrapper] Test setup, not cleaning
[2025-10-14 07:07:19] 2025-10-14 11:07:19,355 [wrapper] apfmon messages muted
[2025-10-14 07:07:19] 2025-10-14 11:07:19,358 [wrapper] ==== wrapper stdout END ====
[2025-10-14 07:07:19] 2025-10-14 11:07:19,360 [wrapper] ==== wrapper stderr END ====
[2025-10-14 07:07:19]  *** Error codes and diagnostics ***
[2025-10-14 07:07:19]     "exeErrorCode": 0,
[2025-10-14 07:07:19]     "exeErrorDiag": "",
[2025-10-14 07:07:19]     "pilotErrorCode": 0,
[2025-10-14 07:07:19]     "pilotErrorDiag": "",
[2025-10-14 07:07:19]  *** Listing of results directory ***
[2025-10-14 07:07:19] total 410200
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 14:53 pilot3.tar.gz
[2025-10-14 07:07:19] -rwx------. 1 boincer umatlas     36292 Oct 12 15:11 runpilot2-wrapper.sh
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:11 queuedata.json
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas       100 Oct 14 05:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 07:07:19] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 14 05:49 run_atlas
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas       105 Oct 14 05:49 job.xml
[2025-10-14 07:07:19] -rw-r--r--. 2 boincer umatlas 219987632 Oct 14 05:49 EVNT.46676267._002048.pool.root.1
[2025-10-14 07:07:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 14 05:49 start_atlas.sh
[2025-10-14 07:07:19] drwxrwx--x. 2 boincer umatlas      4096 Oct 14 05:49 shared
[2025-10-14 07:07:19] -rw-r--r--. 2 boincer umatlas    569680 Oct 14 05:49 input.tar.gz
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas         0 Oct 14 05:49 boinc_lockfile
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas      2550 Oct 14 05:49 pandaJob.out
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas    972837 Oct 14 05:49 agis_schedconf.cvmfs.json
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas   1560580 Oct 14 05:49 agis_ddmendpoints.agis.ALL.json
[2025-10-14 07:07:19] drwx------. 5 boincer umatlas      4096 Oct 14 05:49 pilot3
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas      6945 Oct 14 07:01 init_data.xml
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas       529 Oct 14 07:06 boinc_task_state.xml
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas 194171295 Oct 14 07:06 HITS.46676269._087141.pool.root.1
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas        95 Oct 14 07:06 pilot_heartbeat.json
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas      1047 Oct 14 07:06 memory_monitor_summary.json
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas    319218 Oct 14 07:06 log.46676269._087141.job.log.tgz.1
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas      7802 Oct 14 07:06 heartbeat.json
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas        27 Oct 14 07:07 wrapper_checkpoint.txt
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas      8192 Oct 14 07:07 boinc_mmap_file
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas       823 Oct 14 07:07 pilotlog.txt
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas    679926 Oct 14 07:07 log.46676269._087141.job.log.1
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas       357 Oct 14 07:07 output.list
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas       620 Oct 14 07:07 runtime_log
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas   1013760 Oct 14 07:07 result.tar.gz
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas       656 Oct 14 07:07 tBJMDmKeGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBFlNDm3cuMjm.diag
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas      8703 Oct 14 07:07 runtime_log.err
[2025-10-14 07:07:19] -rw-r--r--. 1 boincer umatlas     21857 Oct 14 07:07 stderr.txt
[2025-10-14 07:07:19] HITS file was successfully produced:
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas 194171295 Oct 14 07:06 shared/HITS.pool.root.1
[2025-10-14 07:07:19]  *** Contents of shared directory: ***
[2025-10-14 07:07:19] total 406028
[2025-10-14 07:07:19] -rw-r--r--. 2 boincer umatlas 219987632 Oct 14 05:49 ATLAS.root_0
[2025-10-14 07:07:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 14 05:49 start_atlas.sh
[2025-10-14 07:07:19] -rw-r--r--. 2 boincer umatlas    569680 Oct 14 05:49 input.tar.gz
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas 194171295 Oct 14 07:06 HITS.pool.root.1
[2025-10-14 07:07:19] -rw-------. 1 boincer umatlas   1013760 Oct 14 07:07 result.tar.gz
07:07:20 (2221371): run_atlas exited; CPU time 31353.418215
07:07:20 (2221371): called boinc_finish(0)

</stderr_txt>
]]>

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