Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:38:05 (12332): wrapper (7.7.26015): starting
05:38:05 (12332): wrapper: running run_atlas (--nthreads 12)
[2025-10-14 05:38:05] Arguments: --nthreads 12
[2025-10-14 05:38:05] Threads: 12
[2025-10-14 05:38:05] Checking for CVMFS
[2025-10-14 05:38:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 05:38:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 05:38:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 05:38:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 05:38:05] 2.11.2.0 2949 225591 99124 151692 1 1 11821988 20275200 1 130560 1 110051678 99.984 12449793 12145 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-14 05:38:05] CVMFS is ok
[2025-10-14 05:38:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 05:38:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 05:38:05] Further information can be found at the LHC@home message board.
[2025-10-14 05:38:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 05:38:05] Checking for apptainer binary...
[2025-10-14 05:38:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 05:38:05] Running /usr/bin/apptainer --version
[2025-10-14 05:38:05] apptainer version 1.3.2-1.el7
[2025-10-14 05:38:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 05:38:07] c-205-13.aglt2.org
[2025-10-14 05:38:07] apptainer works
[2025-10-14 05:38:07] Set ATHENA_PROC_NUMBER=12
[2025-10-14 05:38:07] Set ATHENA_CORE_NUMBER=12
[2025-10-14 05:38:07] Starting ATLAS job with PandaID=6840851826
[2025-10-14 05:38:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 06:52:50]  *** The last 200 lines of the pilot log: ***
[2025-10-14 06:52:50] 2025-10-14 10:52:11,915 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-14 06:52:50] 2025-10-14 10:52:11,915 | INFO     | summary of transferred files:
[2025-10-14 06:52:50] 2025-10-14 10:52:11,915 | INFO     |  -- lfn=log.46676269._091005.job.log.tgz.1, status_code=0, status=transferred
[2025-10-14 06:52:50] 2025-10-14 10:52:11,916 | INFO     | stage-out finished correctly
[2025-10-14 06:52:50] 2025-10-14 10:52:13,020 | INFO     | time since job start (4431s) is within the limit (172800.0s)
[2025-10-14 06:52:50] 2025-10-14 10:52:13,538 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 06:52:50] 2025-10-14 10:52:13,623 | INFO     | job 6840851826 has state=finished
[2025-10-14 06:52:50] 2025-10-14 10:52:13,623 | INFO     | preparing for final server update for job 6840851826 in state='finished'
[2025-10-14 06:52:50] 2025-10-14 10:52:13,624 | INFO     | this job has now completed (state=finished)
[2025-10-14 06:52:50] 2025-10-14 10:52:13,624 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 06:52:50] 2025-10-14 10:52:13,624 | INFO     | log transfer has been attempted: DONE
[2025-10-14 06:52:50] 2025-10-14 10:52:13,625 | INFO     | job 6840851826 has finished - writing final server update
[2025-10-14 06:52:50] 2025-10-14 10:52:13,625 | INFO     | total number of processed events: 400 (read)
[2025-10-14 06:52:50] 2025-10-14 10:52:13,626 | INFO     | executing command: lscpu
[2025-10-14 06:52:50] 2025-10-14 10:52:13,649 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 06:52:50] 2025-10-14 10:52:15,025 | INFO     | time since job start (4433s) is within the limit (172800.0s)
[2025-10-14 06:52:50] 2025-10-14 10:52:17,031 | INFO     | time since job start (4435s) is within the limit (172800.0s)
[2025-10-14 06:52:50] 2025-10-14 10:52:17,261 | WARNING  | process 22379 can no longer be monitored (due to stat problems) - aborting
[2025-10-14 06:52:50] 2025-10-14 10:52:17,262 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840851826/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 06:52:50] 2025-10-14 10:52:17,266 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840851826/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 06:52:50] 2025-10-14 10:52:17,267 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-14 06:52:50] 2025-10-14 10:52:17,267 | WARNING  | maxPSS not found in memory monitor output
[2025-10-14 06:52:50] 2025-10-14 10:52:17,268 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3801315 B
[2025-10-14 06:52:50] 2025-10-14 10:52:17,268 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16269 B
[2025-10-14 06:52:50] 2025-10-14 10:52:17,269 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-14 06:52:50] 2025-10-14 10:52:18,210 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-14 06:52:50] 2025-10-14 10:52:18,220 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-14 06:52:50] 2025-10-14 10:52:18,222 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840851826/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,223 | INFO     | extracted standard info from prmon json
[2025-10-14 06:52:50] 2025-10-14 10:52:18,223 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 06:52:50] 2025-10-14 10:52:18,223 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 06:52:50] 2025-10-14 10:52:18,224 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 06:52:50] 2025-10-14 10:52:18,224 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 06:52:50] 2025-10-14 10:52:18,226 | INFO     | fitting pss+swap vs Time
[2025-10-14 06:52:50] 2025-10-14 10:52:18,227 | INFO     | sum of square deviations: 89127252.5
[2025-10-14 06:52:50] 2025-10-14 10:52:18,227 | INFO     | sum of deviations: -7477302042.0
[2025-10-14 06:52:50] 2025-10-14 10:52:18,227 | INFO     | mean x: 1760437019.5
[2025-10-14 06:52:50] 2025-10-14 10:52:18,227 | INFO     | mean y: 2779874.1515151514
[2025-10-14 06:52:50] 2025-10-14 10:52:18,228 | INFO     | -- intersect: 147694074640.80826
[2025-10-14 06:52:50] 2025-10-14 10:52:18,228 | INFO     | intersect: 147694074640.80826
[2025-10-14 06:52:50] 2025-10-14 10:52:18,228 | INFO     | chi2: 0.08858675793952595
[2025-10-14 06:52:50] 2025-10-14 10:52:18,228 | INFO     | -- intersect: 147694074640.80826
[2025-10-14 06:52:50] 2025-10-14 10:52:18,228 | INFO     | current memory leak: -83.89 B/s (using 66 data points, chi2=0.09)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,229 | INFO     | could have reported an average CPU frequency of 2043 MHz (6 samples)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,229 | INFO     | ..............................
[2025-10-14 06:52:50] 2025-10-14 10:52:18,230 | INFO     | sufficient remaining disk space (29356982272 B)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,230 | INFO     | . Timing measurements:
[2025-10-14 06:52:50] 2025-10-14 10:52:18,230 | INFO     | . get job = 0 s
[2025-10-14 06:52:50] 2025-10-14 10:52:18,230 | INFO     | . initial setup = 2 s
[2025-10-14 06:52:50] 2025-10-14 10:52:18,230 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,231 | INFO     | . payload setup = 7 s
[2025-10-14 06:52:50] 2025-10-14 10:52:18,231 | INFO     | . stage-in = 0 s
[2025-10-14 06:52:50] 2025-10-14 10:52:18,231 | INFO     | . payload execution = 4401 s
[2025-10-14 06:52:50] 2025-10-14 10:52:18,231 | INFO     | . stage-out = 0 s
[2025-10-14 06:52:50] 2025-10-14 10:52:18,231 | INFO     | . log creation = 0 s
[2025-10-14 06:52:50] 2025-10-14 10:52:18,232 | INFO     | ..............................
[2025-10-14 06:52:50] 2025-10-14 10:52:18,328 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840851826: 4099427 B (within 2537553920 B limit)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,328 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840851826/HITS.46676269._091005.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,329 | INFO     | total size of present files: 0 B (workdir size: 4099427 B)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,329 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840851826/HITS.46676269._091005.pool.root.1 since it does not exist
[2025-10-14 06:52:50] 2025-10-14 10:52:18,423 | INFO     | number of running child processes to parent process 22379: 1
[2025-10-14 06:52:50] 2025-10-14 10:52:18,423 | INFO     | maximum number of monitored processes: 6
[2025-10-14 06:52:50] 2025-10-14 10:52:18,423 | INFO     | aborting job monitoring since job object (job id=6840851826) has expired
[2025-10-14 06:52:50] 2025-10-14 10:52:18,713 | INFO     | 
[2025-10-14 06:52:50] 2025-10-14 10:52:18,713 | INFO     | job summary report
[2025-10-14 06:52:50] 2025-10-14 10:52:18,713 | INFO     | --------------------------------------------------
[2025-10-14 06:52:50] 2025-10-14 10:52:18,713 | INFO     | PanDA job id: 6840851826
[2025-10-14 06:52:50] 2025-10-14 10:52:18,713 | INFO     | task id: 46676269
[2025-10-14 06:52:50] 2025-10-14 10:52:18,713 | INFO     | errors: (none)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,714 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 06:52:50] 2025-10-14 10:52:18,714 | INFO     | pilot state: finished 
[2025-10-14 06:52:50] 2025-10-14 10:52:18,714 | INFO     | transexitcode: 0
[2025-10-14 06:52:50] 2025-10-14 10:52:18,714 | INFO     | exeerrorcode: 0
[2025-10-14 06:52:50] 2025-10-14 10:52:18,714 | INFO     | exeerrordiag: 
[2025-10-14 06:52:50] 2025-10-14 10:52:18,714 | INFO     | exitcode: 0
[2025-10-14 06:52:50] 2025-10-14 10:52:18,715 | INFO     | exitmsg: OK
[2025-10-14 06:52:50] 2025-10-14 10:52:18,715 | INFO     | cpuconsumptiontime: 47543 s
[2025-10-14 06:52:50] 2025-10-14 10:52:18,715 | INFO     | nevents: 400
[2025-10-14 06:52:50] 2025-10-14 10:52:18,715 | INFO     | neventsw: 0
[2025-10-14 06:52:50] 2025-10-14 10:52:18,715 | INFO     | pid: 22379
[2025-10-14 06:52:50] 2025-10-14 10:52:18,715 | INFO     | pgrp: 22379
[2025-10-14 06:52:50] 2025-10-14 10:52:18,715 | INFO     | corecount: 12
[2025-10-14 06:52:50] 2025-10-14 10:52:18,716 | INFO     | event service: False
[2025-10-14 06:52:50] 2025-10-14 10:52:18,716 | INFO     | sizes: {0: 2348684, 1: 2348883, 5: 2349145, 11: 2349201, 4412: 2375277, 4413: 2384275, 4415: 2384459, 4419: 2384653}
[2025-10-14 06:52:50] 2025-10-14 10:52:18,716 | INFO     | --------------------------------------------------
[2025-10-14 06:52:50] 2025-10-14 10:52:18,716 | INFO     | 
[2025-10-14 06:52:50] 2025-10-14 10:52:18,716 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-14 06:52:50] 2025-10-14 10:52:18,739 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,739 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,739 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,739 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,740 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,740 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,740 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,740 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,740 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,740 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,741 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,741 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,741 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,741 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,741 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,741 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,742 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 06:52:50] 2025-10-14 10:52:18,742 | INFO     | job 6840851826 has completed (purged errors)
[2025-10-14 06:52:50] 2025-10-14 10:52:18,742 | INFO     | overall cleanup function is called
[2025-10-14 06:52:50] 2025-10-14 10:52:19,747 | INFO     | --- collectZombieJob: --- 10, [22379]
[2025-10-14 06:52:50] 2025-10-14 10:52:19,747 | INFO     | zombie collector waiting for pid 22379
[2025-10-14 06:52:50] 2025-10-14 10:52:19,748 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 06:52:50] 2025-10-14 10:52:19,748 | INFO     | collected zombie processes
[2025-10-14 06:52:50] 2025-10-14 10:52:19,748 | INFO     | will attempt to kill all subprocesses of pid=22379
[2025-10-14 06:52:50] 2025-10-14 10:52:19,838 | INFO     | process IDs to be killed: [22379] (in reverse order)
[2025-10-14 06:52:50] 2025-10-14 10:52:19,891 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 06:52:50] 2025-10-14 10:52:19,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 06:52:50] 2025-10-14 10:52:19,895 | INFO     | did not find any defunct processes belonging to 22379
[2025-10-14 06:52:50] 2025-10-14 10:52:19,898 | INFO     | did not find any defunct processes belonging to 22379
[2025-10-14 06:52:50] 2025-10-14 10:52:19,899 | INFO     | ready for new job
[2025-10-14 06:52:50] 2025-10-14 10:52:19,899 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 06:52:50] 2025-10-14 10:52:19,901 | INFO     | ***************************************
[2025-10-14 06:52:50] 2025-10-14 10:52:19,901 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 06:52:50] 2025-10-14 10:52:19,901 | INFO     | ***************************************
[2025-10-14 06:52:50] 2025-10-14 10:52:19,901 | INFO     | 
[2025-10-14 06:52:50] 2025-10-14 10:52:19,902 | INFO     | architecture information:
[2025-10-14 06:52:50] 2025-10-14 10:52:19,902 | INFO     | executing command: cat /etc/os-release
[2025-10-14 06:52:50] 2025-10-14 10:52:19,917 | INFO     | cat /etc/os-release:
[2025-10-14 06:52:50] NAME="CentOS Linux"
[2025-10-14 06:52:50] VERSION="7 (Core)"
[2025-10-14 06:52:50] ID="centos"
[2025-10-14 06:52:50] ID_LIKE="rhel fedora"
[2025-10-14 06:52:50] VERSION_ID="7"
[2025-10-14 06:52:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 06:52:50] ANSI_COLOR="0;31"
[2025-10-14 06:52:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 06:52:50] HOME_URL="https://www.centos.org/"
[2025-10-14 06:52:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 06:52:50] 
[2025-10-14 06:52:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 06:52:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 06:52:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 06:52:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 06:52:50] 
[2025-10-14 06:52:50] 2025-10-14 10:52:19,917 | INFO     | ***************************************
[2025-10-14 06:52:50] 2025-10-14 10:52:20,420 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-14 06:52:50] 2025-10-14 10:52:20,436 | INFO     | sufficient remaining disk space (29361176576 B)
[2025-10-14 06:52:50] 2025-10-14 10:52:20,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 06:52:50] 2025-10-14 10:52:20,436 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 06:52:50] 2025-10-14 10:52:20,436 | INFO     | update_server=False
[2025-10-14 06:52:50] 2025-10-14 10:52:20,436 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 06:52:50] 2025-10-14 10:52:20,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 06:52:50] 2025-10-14 10:52:20,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 06:52:50] 2025-10-14 10:52:20,471 | INFO     | all job control threads have been joined
[2025-10-14 06:52:50] 2025-10-14 10:52:20,926 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-14 06:52:50] 2025-10-14 10:52:20,927 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-14 06:52:50] 2025-10-14 10:52:20,927 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 06:52:50] 2025-10-14 10:52:20,927 | INFO     | will abort loop
[2025-10-14 06:52:50] 2025-10-14 10:52:21,207 | INFO     | all payload control threads have been joined
[2025-10-14 06:52:50] 2025-10-14 10:52:21,434 | INFO     | all data control threads have been joined
[2025-10-14 06:52:50] 2025-10-14 10:52:21,442 | INFO     | [job] retrieve thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:21,477 | INFO     | [job] control thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:21,490 | INFO     | [job] validate thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:21,501 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:21,777 | INFO     | [payload] validate_post thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:21,803 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:21,932 | INFO     | [job] job monitor thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:22,083 | INFO     | [data] copytool_in thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:22,212 | INFO     | [payload] control thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:22,434 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:22,440 | INFO     | [data] control thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:22,443 | INFO     | [data] copytool_out thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:22,784 | INFO     | [payload] failed_post thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:23,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 06:52:50] 2025-10-14 10:52:24,345 | INFO     | [job] queue monitor thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:24,443 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:29,437 | INFO     | [monitor] cgroup control has ended
[2025-10-14 06:52:50] 2025-10-14 10:52:30,709 | INFO     | job.realtimelogging is not enabled
[2025-10-14 06:52:50] 2025-10-14 10:52:31,714 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 06:52:50] 2025-10-14 10:52:33,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937866139456)>', '<ExcThread(monitor, started 139937567446784)>']
[2025-10-14 06:52:50] 2025-10-14 10:52:38,475 | INFO     | all workflow threads have been joined
[2025-10-14 06:52:50] 2025-10-14 10:52:38,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 06:52:50] 2025-10-14 10:52:38,476 | INFO     | traces error code: 0
[2025-10-14 06:52:50] 2025-10-14 10:52:38,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 06:52:50] 2025-10-14 10:52:50,241 | INFO     | PID=16013 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-14 06:52:50] 2025-10-14 10:52:50,242 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 06:52:50] 2025-10-14 10:52:50,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 06:52:50] 2025-10-14 10:52:50,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 06:52:50] 2025-10-14 10:52:50,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 06:52:50] 2025-10-14 10:52:50,242 | INFO     | [monitor] control thread has ended
[2025-10-14 06:52:50] 2025-10-14 10:52:50,343 [wrapper] ==== pilot stdout END ====
[2025-10-14 06:52:50] 2025-10-14 10:52:50,346 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 06:52:50] 2025-10-14 10:52:50,350 [wrapper] pilotpid: 16013
[2025-10-14 06:52:50] 2025-10-14 10:52:50,354 [wrapper] Pilot exit status: 0
[2025-10-14 06:52:50] 2025-10-14 10:52:50,370 [wrapper] pandaids: 6840851826
[2025-10-14 06:52:50] 2025-10-14 10:52:50,409 [wrapper] cleanup supervisor_pilot 28196 16014
[2025-10-14 06:52:50] 2025-10-14 10:52:50,413 [wrapper] Test setup, not cleaning
[2025-10-14 06:52:50] 2025-10-14 10:52:50,417 [wrapper] apfmon messages muted
[2025-10-14 06:52:50] 2025-10-14 10:52:50,421 [wrapper] ==== wrapper stdout END ====
[2025-10-14 06:52:50] 2025-10-14 10:52:50,425 [wrapper] ==== wrapper stderr END ====
[2025-10-14 06:52:50]  *** Error codes and diagnostics ***
[2025-10-14 06:52:50]     "exeErrorCode": 0,
[2025-10-14 06:52:50]     "exeErrorDiag": "",
[2025-10-14 06:52:50]     "pilotErrorCode": 0,
[2025-10-14 06:52:50]     "pilotErrorDiag": "",
[2025-10-14 06:52:50]  *** Listing of results directory ***
[2025-10-14 06:52:50] total 412044
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-14 06:52:50] -rwx------ 1 boincer umatlas     36292 Oct 12 18:24 runpilot2-wrapper.sh
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:24 queuedata.json
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas       100 Oct 14 05:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 06:52:50] -rwxr-xr-x 1 boincer umatlas      7986 Oct 14 05:38 run_atlas
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas       105 Oct 14 05:38 job.xml
[2025-10-14 06:52:50] -rw-r--r-- 2 boincer umatlas 221097592 Oct 14 05:38 EVNT.46676267._004612.pool.root.1
[2025-10-14 06:52:50] -rw-r--r-- 2 boincer umatlas     15120 Oct 14 05:38 start_atlas.sh
[2025-10-14 06:52:50] drwxrwx--x 2 boincer umatlas      4096 Oct 14 05:38 shared
[2025-10-14 06:52:50] -rw-r--r-- 2 boincer umatlas    569683 Oct 14 05:38 input.tar.gz
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas         0 Oct 14 05:38 boinc_lockfile
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas      2549 Oct 14 05:38 pandaJob.out
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas    972837 Oct 14 05:38 agis_schedconf.cvmfs.json
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas   1560580 Oct 14 05:38 agis_ddmendpoints.agis.ALL.json
[2025-10-14 06:52:50] drwx------ 5 boincer umatlas      4096 Oct 14 05:38 pilot3
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas      5953 Oct 14 06:47 init_data.xml
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas 194917783 Oct 14 06:51 HITS.46676269._091005.pool.root.1
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas       529 Oct 14 06:51 boinc_task_state.xml
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas      1046 Oct 14 06:52 memory_monitor_summary.json
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas    368538 Oct 14 06:52 log.46676269._091005.job.log.tgz.1
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas      7854 Oct 14 06:52 heartbeat.json
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas      8192 Oct 14 06:52 boinc_mmap_file
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas        27 Oct 14 06:52 wrapper_checkpoint.txt
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas       745 Oct 14 06:52 pilotlog.txt
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas        95 Oct 14 06:52 pilot_heartbeat.json
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas    645009 Oct 14 06:52 log.46676269._091005.job.log.1
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas       357 Oct 14 06:52 output.list
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas       620 Oct 14 06:52 runtime_log
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas   1034240 Oct 14 06:52 result.tar.gz
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas       659 Oct 14 06:52 YA6MDmbfJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwqlNDm1g5BEo.diag
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas      8705 Oct 14 06:52 runtime_log.err
[2025-10-14 06:52:50] -rw-r--r-- 1 boincer umatlas     22395 Oct 14 06:52 stderr.txt
[2025-10-14 06:52:50] HITS file was successfully produced:
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas 194917783 Oct 14 06:51 shared/HITS.pool.root.1
[2025-10-14 06:52:50]  *** Contents of shared directory: ***
[2025-10-14 06:52:50] total 407856
[2025-10-14 06:52:50] -rw-r--r-- 2 boincer umatlas 221097592 Oct 14 05:38 ATLAS.root_0
[2025-10-14 06:52:50] -rw-r--r-- 2 boincer umatlas     15120 Oct 14 05:38 start_atlas.sh
[2025-10-14 06:52:50] -rw-r--r-- 2 boincer umatlas    569683 Oct 14 05:38 input.tar.gz
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas 194917783 Oct 14 06:51 HITS.pool.root.1
[2025-10-14 06:52:50] -rw------- 1 boincer umatlas   1034240 Oct 14 06:52 result.tar.gz
06:52:52 (12332): run_atlas exited; CPU time 47519.039482
06:52:52 (12332): called boinc_finish(0)

</stderr_txt>
]]>

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