Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:50:58 (642): wrapper (7.7.26015): starting
08:50:58 (642): wrapper: running run_atlas (--nthreads 8)
[2025-10-15 08:50:58] Arguments: --nthreads 8
[2025-10-15 08:50:58] Threads: 8
[2025-10-15 08:50:58] Checking for CVMFS
[2025-10-15 08:50:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 08:51:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 08:51:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 08:51:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 08:51:02] 2.11.2.0 24698 111358 118324 151725 0 11 18295752 25165825 4682 130560 0 39852056 99.916 16979540 2418 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-15 08:51:02] CVMFS is ok
[2025-10-15 08:51:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 08:51:02] Checking for apptainer binary...
[2025-10-15 08:51:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 08:51:02] Running /usr/bin/apptainer --version
[2025-10-15 08:51:02] apptainer version 1.3.2-1.el7
[2025-10-15 08:51:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 08:51:30] cg-vwn342.simple-grid.lan
[2025-10-15 08:51:30] apptainer works
[2025-10-15 08:51:30] Set ATHENA_PROC_NUMBER=8
[2025-10-15 08:51:30] Set ATHENA_CORE_NUMBER=8
[2025-10-15 08:51:31] Starting ATLAS job with PandaID=6841070219
[2025-10-15 08:51:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 12:30:36]  *** The last 200 lines of the pilot log: ***
[2025-10-15 12:30:36] 2025-10-15 10:29:46,380 | INFO     | mean x: 1760517933.0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,380 | INFO     | mean y: 2418173.128078818
[2025-10-15 12:30:36] 2025-10-15 10:29:46,388 | INFO     | -- intersect: -51673215557.79632
[2025-10-15 12:30:36] 2025-10-15 10:29:46,389 | INFO     | intersect: -51673215557.79632
[2025-10-15 12:30:36] 2025-10-15 10:29:46,389 | INFO     | chi2: 5.768983060670607
[2025-10-15 12:30:36] 2025-10-15 10:29:46,389 | INFO     | sum of square deviations: 2406926989.5
[2025-10-15 12:30:36] 2025-10-15 10:29:46,391 | INFO     | sum of deviations: 88060616961.49998
[2025-10-15 12:30:36] 2025-10-15 10:29:46,391 | INFO     | mean x: 1760517780.5
[2025-10-15 12:30:36] 2025-10-15 10:29:46,391 | INFO     | mean y: 2427667.267676768
[2025-10-15 12:30:36] 2025-10-15 10:29:46,391 | INFO     | -- intersect: -64408450850.79076
[2025-10-15 12:30:36] 2025-10-15 10:29:46,391 | INFO     | intersect: -64408450850.79076
[2025-10-15 12:30:36] 2025-10-15 10:29:46,392 | INFO     | chi2: 4.967585770262364
[2025-10-15 12:30:36] 2025-10-15 10:29:46,392 | INFO     | current chi2=4.967585770262364 (change=13.891482813871978 %)
[2025-10-15 12:30:36] 2025-10-15 10:29:46,392 | INFO     | right removable region: 197
[2025-10-15 12:30:36] 2025-10-15 10:29:46,392 | INFO     | sum of square deviations: 2406926989.5
[2025-10-15 12:30:36] 2025-10-15 10:29:46,394 | INFO     | sum of deviations: 10062873997.500002
[2025-10-15 12:30:36] 2025-10-15 10:29:46,394 | INFO     | mean x: 1760518085.5
[2025-10-15 12:30:36] 2025-10-15 10:29:46,394 | INFO     | mean y: 2471988.48989899
[2025-10-15 12:30:36] 2025-10-15 10:29:46,394 | INFO     | -- intersect: -7357897371.274777
[2025-10-15 12:30:36] 2025-10-15 10:29:46,394 | INFO     | intersect: -7357897371.274777
[2025-10-15 12:30:36] 2025-10-15 10:29:46,394 | INFO     | chi2: 1.5159904319753692
[2025-10-15 12:30:36] 2025-10-15 10:29:46,395 | INFO     | current chi2=1.5159904319753692 (change=73.72170422356648 %)
[2025-10-15 12:30:36] 2025-10-15 10:29:46,395 | INFO     | sum of square deviations: 2229146912.0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,396 | INFO     | sum of deviations: -10344161071.0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,396 | INFO     | mean x: 1760518238.0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,396 | INFO     | mean y: 2489299.0518134716
[2025-10-15 12:30:36] 2025-10-15 10:29:46,397 | INFO     | -- intersect: 8172020039.386039
[2025-10-15 12:30:36] 2025-10-15 10:29:46,397 | INFO     | intersect: 8172020039.386039
[2025-10-15 12:30:36] 2025-10-15 10:29:46,397 | INFO     | chi2: 0.900578106435198
[2025-10-15 12:30:36] 2025-10-15 10:29:46,397 | INFO     | current chi2=0.900578106435198 (change=40.59473678460327 %)
[2025-10-15 12:30:36] 2025-10-15 10:29:46,397 | INFO     | sum of square deviations: 2060343747.0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,399 | INFO     | sum of deviations: -7212682883.000001
[2025-10-15 12:30:36] 2025-10-15 10:29:46,399 | INFO     | mean x: 1760518390.5
[2025-10-15 12:30:36] 2025-10-15 10:29:46,399 | INFO     | mean y: 2486512.9574468085
[2025-10-15 12:30:36] 2025-10-15 10:29:46,399 | INFO     | -- intersect: 6165565309.325916
[2025-10-15 12:30:36] 2025-10-15 10:29:46,399 | INFO     | intersect: 6165565309.325916
[2025-10-15 12:30:36] 2025-10-15 10:29:46,399 | INFO     | chi2: 0.8779926759987737
[2025-10-15 12:30:36] 2025-10-15 10:29:46,400 | INFO     | current chi2=0.8779926759987737 (change=2.5078813569902616 %)
[2025-10-15 12:30:36] 2025-10-15 10:29:46,400 | INFO     | left removable region: 30
[2025-10-15 12:30:36] 2025-10-15 10:29:46,400 | INFO     | sum of square deviations: 1444149868.0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,401 | INFO     | sum of deviations: 3019357626.0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,401 | INFO     | mean x: 1760518665.0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,401 | INFO     | mean y: 2501516.5868263473
[2025-10-15 12:30:36] 2025-10-15 10:29:46,401 | INFO     | -- intersect: -3678304454.226093
[2025-10-15 12:30:36] 2025-10-15 10:29:46,402 | INFO     | intersect: -3678304454.226093
[2025-10-15 12:30:36] 2025-10-15 10:29:46,402 | INFO     | chi2: 0.000800920749203759
[2025-10-15 12:30:36] 2025-10-15 10:29:46,402 | INFO     | -- intersect: -3678304454.226093
[2025-10-15 12:30:36] 2025-10-15 10:29:46,402 | INFO     | current memory leak: 2.09 B/s (using 167 data points, chi2=0.00)
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | ..............................
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | . Timing measurements:
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | . get job = 0 s
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | . initial setup = 10 s
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | . payload setup = 134 s
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | . stage-in = 0 s
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | . payload execution = 12509 s
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | . stage-out = 1 s
[2025-10-15 12:30:36] 2025-10-15 10:29:46,403 | INFO     | . log creation = 0 s
[2025-10-15 12:30:36] 2025-10-15 10:29:46,404 | INFO     | ..............................
[2025-10-15 12:30:36] 2025-10-15 10:29:46,912 | INFO     | 
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | job summary report
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | --------------------------------------------------
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | PanDA job id: 6841070219
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | task id: 46676269
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | errors: (none)
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | pilot state: finished 
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | transexitcode: 0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | exeerrorcode: 0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | exeerrordiag: 
[2025-10-15 12:30:36] 2025-10-15 10:29:46,913 | INFO     | exitcode: 0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | exitmsg: OK
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | cpuconsumptiontime: 46015 s
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | nevents: 400
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | neventsw: 0
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | pid: 11311
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | pgrp: 11311
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | corecount: 8
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | event service: False
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | sizes: {0: 2348092, 1: 2348777, 2: 2348976, 12: 2348976, 23: 2349004, 34: 2349032, 44: 2349188, 55: 2349216, 66: 2349244, 77: 2349272, 87: 2349328, 92: 2349898, 98
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | --------------------------------------------------
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | 
[2025-10-15 12:30:36] 2025-10-15 10:29:46,914 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-10-15 12:30:36] 2025-10-15 10:29:47,086 | INFO     | time since job start (12883s) is within the limit (172800.0s)
[2025-10-15 12:30:36] 2025-10-15 10:29:47,456 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,456 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,456 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,456 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,456 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,457 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,458 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,458 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-15 12:30:36] 2025-10-15 10:29:47,458 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,458 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-15 12:30:36] 2025-10-15 10:29:47,458 | INFO     | job 6841070219 has completed (purged errors)
[2025-10-15 12:30:36] 2025-10-15 10:29:47,458 | INFO     | overall cleanup function is called
[2025-10-15 12:30:36] 2025-10-15 10:29:48,471 | INFO     | --- collectZombieJob: --- 10, [11311]
[2025-10-15 12:30:36] 2025-10-15 10:29:48,472 | INFO     | zombie collector waiting for pid 11311
[2025-10-15 12:30:36] 2025-10-15 10:29:48,472 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-15 12:30:36] 2025-10-15 10:29:48,472 | INFO     | collected zombie processes
[2025-10-15 12:30:36] 2025-10-15 10:29:48,472 | INFO     | will attempt to kill all subprocesses of pid=11311
[2025-10-15 12:30:36] 2025-10-15 10:29:48,571 | INFO     | process IDs to be killed: [11311] (in reverse order)
[2025-10-15 12:30:36] 2025-10-15 10:29:49,411 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 12:30:36] 2025-10-15 10:29:49,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 12:30:36] 2025-10-15 10:29:49,414 | INFO     | did not find any defunct processes belonging to 11311
[2025-10-15 12:30:36] 2025-10-15 10:29:49,417 | INFO     | did not find any defunct processes belonging to 11311
[2025-10-15 12:30:36] 2025-10-15 10:29:49,417 | INFO     | ready for new job
[2025-10-15 12:30:36] 2025-10-15 10:29:49,418 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 12:30:36] 2025-10-15 10:29:49,419 | INFO     | ***************************************
[2025-10-15 12:30:36] 2025-10-15 10:29:49,420 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-15 12:30:36] 2025-10-15 10:29:49,420 | INFO     | ***************************************
[2025-10-15 12:30:36] 2025-10-15 10:29:49,420 | INFO     | 
[2025-10-15 12:30:36] 2025-10-15 10:29:49,420 | INFO     | pilot is running in a VM
[2025-10-15 12:30:36] 2025-10-15 10:29:49,420 | INFO     | architecture information:
[2025-10-15 12:30:36] 2025-10-15 10:29:49,425 | INFO     | executing command: cat /etc/os-release
[2025-10-15 12:30:36] 2025-10-15 10:29:49,540 | INFO     | cat /etc/os-release:
[2025-10-15 12:30:36] NAME="CentOS Linux"
[2025-10-15 12:30:36] VERSION="7 (Core)"
[2025-10-15 12:30:36] ID="centos"
[2025-10-15 12:30:36] ID_LIKE="rhel fedora"
[2025-10-15 12:30:36] VERSION_ID="7"
[2025-10-15 12:30:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 12:30:36] ANSI_COLOR="0;31"
[2025-10-15 12:30:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 12:30:36] HOME_URL="https://www.centos.org/"
[2025-10-15 12:30:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 12:30:36] 
[2025-10-15 12:30:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 12:30:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 12:30:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 12:30:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 12:30:36] 
[2025-10-15 12:30:36] 2025-10-15 10:29:49,540 | INFO     | ***************************************
[2025-10-15 12:30:36] 2025-10-15 10:29:50,045 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-10-15 12:30:36] 2025-10-15 10:29:50,292 | INFO     | sufficient remaining disk space (496533241856 B)
[2025-10-15 12:30:36] 2025-10-15 10:29:50,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 12:30:36] 2025-10-15 10:29:50,293 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 12:30:36] 2025-10-15 10:29:50,293 | INFO     | update_server=False
[2025-10-15 12:30:36] 2025-10-15 10:29:50,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 12:30:36] 2025-10-15 10:29:50,293 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 12:30:36] 2025-10-15 10:29:50,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 12:30:36] 2025-10-15 10:29:50,499 | INFO     | all payload control threads have been joined
[2025-10-15 12:30:36] 2025-10-15 10:29:50,694 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-15 12:30:36] 2025-10-15 10:29:50,695 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-15 12:30:36] 2025-10-15 10:29:50,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 12:30:36] 2025-10-15 10:29:50,695 | INFO     | will abort loop
[2025-10-15 12:30:36] 2025-10-15 10:29:50,819 | INFO     | all job control threads have been joined
[2025-10-15 12:30:36] 2025-10-15 10:29:51,239 | INFO     | all data control threads have been joined
[2025-10-15 12:30:36] 2025-10-15 10:29:51,299 | INFO     | [job] retrieve thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:51,481 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:51,506 | INFO     | [payload] control thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:51,570 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 12:30:36] 2025-10-15 10:29:51,701 | INFO     | [job] job monitor thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:51,732 | INFO     | [job] validate thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:51,825 | INFO     | [job] control thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:51,884 | INFO     | [payload] failed_post thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:52,091 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:52,246 | INFO     | [data] control thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:52,301 | INFO     | [data] copytool_out thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:52,379 | INFO     | [payload] validate_post thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:52,437 | INFO     | [data] copytool_in thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:52,475 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:52,575 | INFO     | [job] queue monitor thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:29:54,301 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:30:01,210 | INFO     | job.realtimelogging is not enabled
[2025-10-15 12:30:36] 2025-10-15 10:30:02,215 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 12:30:36] 2025-10-15 10:30:19,107 | INFO     | 12895s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-15 12:30:36] 2025-10-15 10:30:20,260 | INFO     | PID=4774 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-15 12:30:36] 2025-10-15 10:30:20,260 | INFO     | .. there are 9 such processes running
[2025-10-15 12:30:36] 2025-10-15 10:30:20,260 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 12:30:36] 2025-10-15 10:30:20,261 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 12:30:36] 2025-10-15 10:30:20,261 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 12:30:36] 2025-10-15 10:30:25,638 | INFO     | [monitor] cgroup control has ended
[2025-10-15 12:30:36] 2025-10-15 10:30:26,625 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140222191511360)>', '<ExcThread(monitor, started 140221588944640)>']
[2025-10-15 12:30:36] 2025-10-15 10:30:27,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 12:30:36] 2025-10-15 10:30:27,302 | INFO     | [monitor] control thread has ended
[2025-10-15 12:30:36] 2025-10-15 10:30:31,651 | INFO     | all workflow threads have been joined
[2025-10-15 12:30:36] 2025-10-15 10:30:31,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 12:30:36] 2025-10-15 10:30:31,652 | INFO     | traces error code: 0
[2025-10-15 12:30:36] 2025-10-15 10:30:31,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 12:30:36] 2025-10-15 10:30:32,035 [wrapper] ==== pilot stdout END ====
[2025-10-15 12:30:36] 2025-10-15 10:30:32,148 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 12:30:36] 2025-10-15 10:30:32,250 [wrapper] pilotpid: 4774
[2025-10-15 12:30:36] 2025-10-15 10:30:32,352 [wrapper] Pilot exit status: 0
[2025-10-15 12:30:36] 2025-10-15 10:30:32,832 [wrapper] pandaids: 6841070219
[2025-10-15 12:30:36] 2025-10-15 10:30:33,609 [wrapper] cleanup supervisor_pilot   789 4775
[2025-10-15 12:30:36] 2025-10-15 10:30:33,701 [wrapper] Test setup, not cleaning
[2025-10-15 12:30:36] 2025-10-15 10:30:33,781 [wrapper] apfmon messages muted
[2025-10-15 12:30:36] 2025-10-15 10:30:33,881 [wrapper] ==== wrapper stdout END ====
[2025-10-15 12:30:36] 2025-10-15 10:30:33,934 [wrapper] ==== wrapper stderr END ====
[2025-10-15 12:30:36]  *** Error codes and diagnostics ***
[2025-10-15 12:30:36]     "exeErrorCode": 0,
[2025-10-15 12:30:36]     "exeErrorDiag": "",
[2025-10-15 12:30:36]     "pilotErrorCode": 0,
[2025-10-15 12:30:36]     "pilotErrorDiag": "",
[2025-10-15 12:30:36]  *** Listing of results directory ***
[2025-10-15 12:30:36] total 415780
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc    557409 Oct 13 03:18 pilot3.tar.gz
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc      5112 Oct 13 03:21 queuedata.json
[2025-10-15 12:30:36] -rwx------. 1 boinc boinc     36292 Oct 13 03:22 runpilot2-wrapper.sh
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc       100 Oct 15 08:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 12:30:36] -rwxr-xr-x. 1 boinc boinc      7986 Oct 15 08:50 run_atlas
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc       105 Oct 15 08:50 job.xml
[2025-10-15 12:30:36] -rw-r--r--. 2 boinc boinc 222091184 Oct 15 08:50 EVNT.46676267._004727.pool.root.1
[2025-10-15 12:30:36] -rw-r--r--. 2 boinc boinc     15120 Oct 15 08:50 start_atlas.sh
[2025-10-15 12:30:36] drwxrwx--x. 2 boinc boinc        68 Oct 15 08:50 shared
[2025-10-15 12:30:36] -rw-r--r--. 2 boinc boinc    569679 Oct 15 08:50 input.tar.gz
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc      6390 Oct 15 08:50 init_data.xml
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc         0 Oct 15 08:50 boinc_lockfile
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc      2549 Oct 15 08:51 pandaJob.out
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc    974015 Oct 15 08:54 agis_schedconf.cvmfs.json
[2025-10-15 12:30:36] drwx------. 5 boinc boinc      4096 Oct 15 08:55 pilot3
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc 195402671 Oct 15 12:28 HITS.46676269._094024.pool.root.1
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc       531 Oct 15 12:28 boinc_task_state.xml
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc      1031 Oct 15 12:28 memory_monitor_summary.json
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc   1560740 Oct 15 12:28 agis_ddmendpoints.agis.ALL.json
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc    450464 Oct 15 12:28 log.46676269._094024.job.log.tgz.1
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc        95 Oct 15 12:29 pilot_heartbeat.json
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc      7785 Oct 15 12:29 heartbeat.json
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc      8192 Oct 15 12:30 boinc_mmap_file
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc        28 Oct 15 12:30 wrapper_checkpoint.txt
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc      5257 Oct 15 12:30 pilotlog.txt
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc   1739268 Oct 15 12:30 log.46676269._094024.job.log.1
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc       357 Oct 15 12:30 output.list
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc       620 Oct 15 12:30 runtime_log
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc   2211840 Oct 15 12:30 result.tar.gz
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc       657 Oct 15 12:30 wD2KDmqRMS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqLmNDmmPIiEn.diag
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc      8703 Oct 15 12:30 runtime_log.err
[2025-10-15 12:30:36] -rw-r--r--. 1 boinc boinc     20702 Oct 15 12:30 stderr.txt
[2025-10-15 12:30:36] HITS file was successfully produced:
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc 195402671 Oct 15 12:28 shared/HITS.pool.root.1
[2025-10-15 12:30:36]  *** Contents of shared directory: ***
[2025-10-15 12:30:36] total 410448
[2025-10-15 12:30:36] -rw-r--r--. 2 boinc boinc 222091184 Oct 15 08:50 ATLAS.root_0
[2025-10-15 12:30:36] -rw-r--r--. 2 boinc boinc     15120 Oct 15 08:50 start_atlas.sh
[2025-10-15 12:30:36] -rw-r--r--. 2 boinc boinc    569679 Oct 15 08:50 input.tar.gz
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc 195402671 Oct 15 12:28 HITS.pool.root.1
[2025-10-15 12:30:36] -rw-------. 1 boinc boinc   2211840 Oct 15 12:30 result.tar.gz
12:30:38 (642): run_atlas exited; CPU time 46163.327109
12:30:38 (642): called boinc_finish(0)

</stderr_txt>
]]>

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