Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:57:47 (376884): wrapper (7.7.26015): starting
22:57:47 (376884): wrapper: running run_atlas (--nthreads 6)
[2025-10-14 22:57:47] Arguments: --nthreads 6
[2025-10-14 22:57:47] Threads: 6
[2025-10-14 22:57:47] Checking for CVMFS
[2025-10-14 22:57:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 22:57:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 22:57:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 22:57:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 22:57:48] 2.13.1.0 3910062 1059 66536 151698 2 57 30860824 52428800 922 130560 0 2006968 99.995 39850 118 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-14 22:57:48] CVMFS is ok
[2025-10-14 22:57:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 22:57:48] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-14 22:57:48] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-14 22:57:48] Further information can be found at the LHC@home message board.
[2025-10-14 22:57:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 22:57:48] Checking for apptainer binary...
[2025-10-14 22:57:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 22:57:48] Running /usr/bin/apptainer --version
[2025-10-14 22:57:48] apptainer version 1.4.1-1.el9
[2025-10-14 22:57:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 22:57:48] Atto003
[2025-10-14 22:57:48] apptainer works
[2025-10-14 22:57:48] Set ATHENA_PROC_NUMBER=6
[2025-10-14 22:57:48] Set ATHENA_CORE_NUMBER=6
[2025-10-14 22:57:48] Starting ATLAS job with PandaID=6838452330
[2025-10-14 22:57:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 00:15:09]  *** The last 200 lines of the pilot log: ***
[2025-10-15 00:15:09] 2025-10-14 15:14:24,094 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-15 00:15:09] 2025-10-14 15:14:24,094 | INFO     | summary of transferred files:
[2025-10-15 00:15:09] 2025-10-14 15:14:24,094 | INFO     |  -- lfn=log.46676269._058358.job.log.tgz.1, status_code=0, status=transferred
[2025-10-15 00:15:09] 2025-10-14 15:14:24,094 | INFO     | stage-out finished correctly
[2025-10-15 00:15:09] 2025-10-14 15:14:25,837 | INFO     | time since job start (4590s) is within the limit (172800.0s)
[2025-10-15 00:15:09] 2025-10-14 15:14:25,853 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-15 00:15:09] 2025-10-14 15:14:27,679 | INFO     | job 6838452330 has state=finished
[2025-10-15 00:15:09] 2025-10-14 15:14:27,680 | INFO     | preparing for final server update for job 6838452330 in state='finished'
[2025-10-15 00:15:09] 2025-10-14 15:14:27,842 | INFO     | time since job start (4592s) is within the limit (172800.0s)
[2025-10-15 00:15:09] 2025-10-14 15:14:27,842 | INFO     | 4596s have passed since pilot start - server update state is 'RUNNING'
[2025-10-15 00:15:09] 2025-10-14 15:14:28,786 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-15 00:15:09] 2025-10-14 15:14:28,787 | INFO     | this job has now completed (state=finished)
[2025-10-15 00:15:09] 2025-10-14 15:14:28,787 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-15 00:15:09] 2025-10-14 15:14:28,787 | INFO     | log transfer has been attempted: DONE
[2025-10-15 00:15:09] 2025-10-14 15:14:28,787 | INFO     | job 6838452330 has finished - writing final server update
[2025-10-15 00:15:09] 2025-10-14 15:14:28,787 | INFO     | total number of processed events: 400 (read)
[2025-10-15 00:15:09] 2025-10-14 15:14:28,788 | INFO     | executing command: lscpu
[2025-10-15 00:15:09] 2025-10-14 15:14:28,798 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-15 00:15:09] 2025-10-14 15:14:28,918 | WARNING  | process 387409 can no longer be monitored (due to stat problems) - aborting
[2025-10-15 00:15:09] 2025-10-14 15:14:28,918 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838452330/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 00:15:09] 2025-10-14 15:14:28,918 | INFO     | reaping zombies for max 20 seconds
[2025-10-15 00:15:09] 2025-10-14 15:14:28,925 | INFO     | checking for looping job (in state=finished)
[2025-10-15 00:15:09] 2025-10-14 15:14:28,925 | INFO     | using looping job limit: 7200 s
[2025-10-15 00:15:09] 2025-10-14 15:14:28,996 | INFO     | number of running child processes to parent process 387409: 1
[2025-10-15 00:15:09] 2025-10-14 15:14:28,996 | INFO     | maximum number of monitored processes: 6
[2025-10-15 00:15:09] 2025-10-14 15:14:29,847 | INFO     | time since job start (4594s) is within the limit (172800.0s)
[2025-10-15 00:15:09] 2025-10-14 15:14:31,499 | INFO     | monitor loop #350: job 0:6838452330 is in state 'finished'
[2025-10-15 00:15:09] 2025-10-14 15:14:31,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-15 00:15:09] 2025-10-14 15:14:31,852 | INFO     | time since job start (4596s) is within the limit (172800.0s)
[2025-10-15 00:15:09] 2025-10-14 15:14:33,857 | INFO     | time since job start (4598s) is within the limit (172800.0s)
[2025-10-15 00:15:09] 2025-10-14 15:14:34,002 | INFO     | monitor loop #351: job 0:6838452330 is in state 'finished'
[2025-10-15 00:15:09] 2025-10-14 15:14:34,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-15 00:15:09] 2025-10-14 15:14:35,862 | INFO     | time since job start (4600s) is within the limit (172800.0s)
[2025-10-15 00:15:09] 2025-10-14 15:14:36,505 | INFO     | monitor loop #352: job 0:6838452330 is in state 'finished'
[2025-10-15 00:15:09] 2025-10-14 15:14:36,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-15 00:15:09] 2025-10-14 15:14:36,553 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-15 00:15:09] 2025-10-14 15:14:36,554 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4000.4328749999995
[2025-10-15 00:15:09] 2025-10-14 15:14:36,557 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838452330/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 00:15:09] 2025-10-14 15:14:36,557 | INFO     | extracted standard info from prmon json
[2025-10-15 00:15:09] 2025-10-14 15:14:36,557 | INFO     | extracted standard memory fields from prmon json
[2025-10-15 00:15:09] 2025-10-14 15:14:36,557 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-15 00:15:09] 2025-10-14 15:14:36,557 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-15 00:15:09] 2025-10-14 15:14:36,557 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-15 00:15:09] 2025-10-14 15:14:36,559 | INFO     | fitting pss+swap vs Time
[2025-10-15 00:15:09] 2025-10-14 15:14:36,559 | INFO     | sum of square deviations: 97479037.0
[2025-10-15 00:15:09] 2025-10-14 15:14:36,559 | INFO     | sum of deviations: -2953268365.500001
[2025-10-15 00:15:09] 2025-10-14 15:14:36,559 | INFO     | mean x: 1760452641.5
[2025-10-15 00:15:09] 2025-10-14 15:14:36,559 | INFO     | mean y: 2476748.8970588236
[2025-10-15 00:15:09] 2025-10-14 15:14:36,559 | INFO     | -- intersect: 53337934864.910904
[2025-10-15 00:15:09] 2025-10-14 15:14:36,559 | INFO     | intersect: 53337934864.910904
[2025-10-15 00:15:09] 2025-10-14 15:14:36,559 | INFO     | chi2: 0.07877034188913418
[2025-10-15 00:15:09] 2025-10-14 15:14:36,559 | INFO     | -- intersect: 53337934864.910904
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | current memory leak: -30.30 B/s (using 68 data points, chi2=0.08)
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | could have reported an average CPU frequency of 3784 MHz (6 samples)
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | ..............................
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | . Timing measurements:
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | . get job = 0 s
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | . initial setup = 4 s
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | . payload setup = 2 s
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | . stage-in = 0 s
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | . payload execution = 4569 s
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | . stage-out = 0 s
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | . log creation = 0 s
[2025-10-15 00:15:09] 2025-10-14 15:14:36,560 | INFO     | ..............................
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | 
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | job summary report
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | --------------------------------------------------
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | PanDA job id: 6838452330
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | task id: 46676269
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | errors: (none)
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | pilot state: finished 
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | transexitcode: 0
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | exeerrorcode: 0
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | exeerrordiag: 
[2025-10-15 00:15:09] 2025-10-14 15:14:36,623 | INFO     | exitcode: 0
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | exitmsg: OK
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | cpuconsumptiontime: 25201 s
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | nevents: 400
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | neventsw: 0
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | pid: 387409
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | pgrp: 387409
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | corecount: 6
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | event service: False
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | sizes: {0: 2348750, 1: 2348949, 2: 2349211, 11: 2349239, 4575: 2375492, 4576: 2384490, 4577: 2384674, 4588: 2384868}
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | --------------------------------------------------
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | 
[2025-10-15 00:15:09] 2025-10-14 15:14:36,624 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-15 00:15:09] 2025-10-14 15:14:36,632 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,632 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,632 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,632 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,632 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-15 00:15:09] 2025-10-14 15:14:36,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,634 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-15 00:15:09] 2025-10-14 15:14:36,634 | INFO     | job 6838452330 has completed (purged errors)
[2025-10-15 00:15:09] 2025-10-14 15:14:36,634 | INFO     | overall cleanup function is called
[2025-10-15 00:15:09] 2025-10-14 15:14:37,640 | INFO     | --- collectZombieJob: --- 10, [387409]
[2025-10-15 00:15:09] 2025-10-14 15:14:37,640 | INFO     | zombie collector waiting for pid 387409
[2025-10-15 00:15:09] 2025-10-14 15:14:37,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-15 00:15:09] 2025-10-14 15:14:37,640 | INFO     | collected zombie processes
[2025-10-15 00:15:09] 2025-10-14 15:14:37,640 | INFO     | will attempt to kill all subprocesses of pid=387409
[2025-10-15 00:15:09] 2025-10-14 15:14:37,715 | INFO     | process IDs to be killed: [387409] (in reverse order)
[2025-10-15 00:15:09] 2025-10-14 15:14:37,734 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 00:15:09] 2025-10-14 15:14:37,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 00:15:09] 2025-10-14 15:14:37,736 | INFO     | did not find any defunct processes belonging to 387409
[2025-10-15 00:15:09] 2025-10-14 15:14:37,737 | INFO     | did not find any defunct processes belonging to 387409
[2025-10-15 00:15:09] 2025-10-14 15:14:37,737 | INFO     | ready for new job
[2025-10-15 00:15:09] 2025-10-14 15:14:37,737 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 00:15:09] 2025-10-14 15:14:37,738 | INFO     | ***************************************
[2025-10-15 00:15:09] 2025-10-14 15:14:37,738 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-15 00:15:09] 2025-10-14 15:14:37,738 | INFO     | ***************************************
[2025-10-15 00:15:09] 2025-10-14 15:14:37,738 | INFO     | 
[2025-10-15 00:15:09] 2025-10-14 15:14:37,738 | INFO     | architecture information:
[2025-10-15 00:15:09] 2025-10-14 15:14:37,738 | INFO     | executing command: cat /etc/os-release
[2025-10-15 00:15:09] 2025-10-14 15:14:37,744 | INFO     | cat /etc/os-release:
[2025-10-15 00:15:09] NAME="CentOS Linux"
[2025-10-15 00:15:09] VERSION="7 (Core)"
[2025-10-15 00:15:09] ID="centos"
[2025-10-15 00:15:09] ID_LIKE="rhel fedora"
[2025-10-15 00:15:09] VERSION_ID="7"
[2025-10-15 00:15:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 00:15:09] ANSI_COLOR="0;31"
[2025-10-15 00:15:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 00:15:09] HOME_URL="https://www.centos.org/"
[2025-10-15 00:15:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 00:15:09] 
[2025-10-15 00:15:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 00:15:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 00:15:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 00:15:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 00:15:09] 
[2025-10-15 00:15:09] 2025-10-14 15:14:37,745 | INFO     | ***************************************
[2025-10-15 00:15:09] 2025-10-14 15:14:38,247 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-15 00:15:09] 2025-10-14 15:14:38,254 | INFO     | sufficient remaining disk space (113311219712 B)
[2025-10-15 00:15:09] 2025-10-14 15:14:38,255 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 00:15:09] 2025-10-14 15:14:38,255 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 00:15:09] 2025-10-14 15:14:38,255 | INFO     | update_server=False
[2025-10-15 00:15:09] 2025-10-14 15:14:38,255 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 00:15:09] 2025-10-14 15:14:38,255 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 00:15:09] 2025-10-14 15:14:38,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 00:15:09] 2025-10-14 15:14:38,255 | INFO     | aborting loop
[2025-10-15 00:15:09] 2025-10-14 15:14:38,284 | INFO     | all data control threads have been joined
[2025-10-15 00:15:09] 2025-10-14 15:14:38,538 | INFO     | all payload control threads have been joined
[2025-10-15 00:15:09] 2025-10-14 15:14:38,887 | INFO     | all job control threads have been joined
[2025-10-15 00:15:09] 2025-10-14 15:14:39,260 | INFO     | [job] retrieve thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:39,260 | INFO     | [job] queue monitor thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:39,261 | INFO     | [job] job monitor thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:39,289 | INFO     | [data] control thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:39,544 | INFO     | [payload] control thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:39,642 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:39,645 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 00:15:09] 2025-10-14 15:14:39,888 | INFO     | [job] control thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:39,934 | INFO     | [payload] failed_post thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:39,934 | INFO     | [job] validate thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:40,085 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:40,196 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:40,414 | INFO     | [data] copytool_in thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:40,702 | INFO     | [payload] validate_post thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:40,923 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 00:15:09] 2025-10-14 15:14:41,650 | INFO     | [data] copytool_out thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:44,927 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:14:48,343 | INFO     | job.realtimelogging is not enabled
[2025-10-15 00:15:09] 2025-10-14 15:14:49,348 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 00:15:09] 2025-10-14 15:15:02,579 | INFO     | [monitor] cgroup control has ended
[2025-10-15 00:15:09] 2025-10-14 15:15:03,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140463689348928)>', '<ExcThread(monitor, started 140463189247744)>']
[2025-10-15 00:15:09] 2025-10-14 15:15:08,785 | INFO     | all workflow threads have been joined
[2025-10-15 00:15:09] 2025-10-14 15:15:08,785 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 00:15:09] 2025-10-14 15:15:08,785 | INFO     | traces error code: 0
[2025-10-15 00:15:09] 2025-10-14 15:15:08,785 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 00:15:09] 2025-10-14 15:15:08,996 | INFO     | PID=380670 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-15 00:15:09] 2025-10-14 15:15:09,002 | INFO     | .. there are 2 such processes running
[2025-10-15 00:15:09] 2025-10-14 15:15:09,002 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 00:15:09] 2025-10-14 15:15:09,002 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 00:15:09] 2025-10-14 15:15:09,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 00:15:09] 2025-10-14 15:15:09,002 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 00:15:09] 2025-10-14 15:15:09,002 | INFO     | [monitor] control thread has ended
[2025-10-15 00:15:09] 2025-10-14 15:15:09,060 [wrapper] ==== pilot stdout END ====
[2025-10-15 00:15:09] 2025-10-14 15:15:09,061 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 00:15:09] 2025-10-14 15:15:09,062 [wrapper] pilotpid: 380670
[2025-10-15 00:15:09] 2025-10-14 15:15:09,063 [wrapper] Pilot exit status: 0
[2025-10-15 00:15:09] 2025-10-14 15:15:09,067 [wrapper] pandaids: 6838452330
[2025-10-15 00:15:09] 2025-10-14 15:15:09,078 [wrapper] cleanup supervisor_pilot  425710 380671
[2025-10-15 00:15:09] 2025-10-14 15:15:09,079 [wrapper] Test setup, not cleaning
[2025-10-15 00:15:09] 2025-10-14 15:15:09,080 [wrapper] apfmon messages muted
[2025-10-15 00:15:09] 2025-10-14 15:15:09,081 [wrapper] ==== wrapper stdout END ====
[2025-10-15 00:15:09] 2025-10-14 15:15:09,082 [wrapper] ==== wrapper stderr END ====
[2025-10-15 00:15:09]  *** Error codes and diagnostics ***
[2025-10-15 00:15:09]     "exeErrorCode": 0,
[2025-10-15 00:15:09]     "exeErrorDiag": "",
[2025-10-15 00:15:09]     "pilotErrorCode": 0,
[2025-10-15 00:15:09]     "pilotErrorDiag": "",
[2025-10-15 00:15:09]  *** Listing of results directory ***
[2025-10-15 00:15:09] total 413604
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc    557409 Oct 11 21:51 pilot3.tar.gz
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc      5112 Oct 11 22:33 queuedata.json
[2025-10-15 00:15:09] -rwx------. 1 boinc boinc     36292 Oct 11 22:34 runpilot2-wrapper.sh
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc       100 Oct 14 22:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 00:15:09] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 22:57 run_atlas
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc       105 Oct 14 22:57 job.xml
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc      9345 Oct 14 22:57 init_data.xml
[2025-10-15 00:15:09] -rw-r--r--. 2 boinc boinc 222150822 Oct 14 22:57 EVNT.46676267._002340.pool.root.1
[2025-10-15 00:15:09] -rw-r--r--. 2 boinc boinc     15120 Oct 14 22:57 start_atlas.sh
[2025-10-15 00:15:09] drwxrwx--x. 2 boinc boinc        68 Oct 14 22:57 shared
[2025-10-15 00:15:09] -rw-r--r--. 2 boinc boinc    569682 Oct 14 22:57 input.tar.gz
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc         0 Oct 14 22:57 boinc_lockfile
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc      2550 Oct 14 22:57 pandaJob.out
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc    973969 Oct 14 22:57 agis_schedconf.cvmfs.json
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc   1560740 Oct 14 22:57 agis_ddmendpoints.agis.ALL.json
[2025-10-15 00:15:09] drwx------. 5 boinc boinc      4096 Oct 14 22:57 pilot3
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc       529 Oct 15 00:14 boinc_task_state.xml
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc 195524693 Oct 15 00:14 HITS.46676269._058358.pool.root.1
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc      1017 Oct 15 00:14 memory_monitor_summary.json
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc    292496 Oct 15 00:14 log.46676269._058358.job.log.tgz.1
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc        95 Oct 15 00:14 pilot_heartbeat.json
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc      7763 Oct 15 00:14 heartbeat.json
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc        27 Oct 15 00:15 wrapper_checkpoint.txt
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc      8192 Oct 15 00:15 boinc_mmap_file
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc       821 Oct 15 00:15 pilotlog.txt
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc    688165 Oct 15 00:15 log.46676269._058358.job.log.1
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc       357 Oct 15 00:15 output.list
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc       620 Oct 15 00:15 runtime_log
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc   1003520 Oct 15 00:15 result.tar.gz
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc      8651 Oct 15 00:15 runtime_log.err
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc       638 Oct 15 00:15 RmXMDmjuoR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvxRMDmzjEM0n.diag
[2025-10-15 00:15:09] -rw-r--r--. 1 boinc boinc     22133 Oct 15 00:15 stderr.txt
[2025-10-15 00:15:09] HITS file was successfully produced:
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc 195524693 Oct 15 00:14 shared/HITS.pool.root.1
[2025-10-15 00:15:09]  *** Contents of shared directory: ***
[2025-10-15 00:15:09] total 409448
[2025-10-15 00:15:09] -rw-r--r--. 2 boinc boinc 222150822 Oct 14 22:57 ATLAS.root_0
[2025-10-15 00:15:09] -rw-r--r--. 2 boinc boinc     15120 Oct 14 22:57 start_atlas.sh
[2025-10-15 00:15:09] -rw-r--r--. 2 boinc boinc    569682 Oct 14 22:57 input.tar.gz
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc 195524693 Oct 15 00:14 HITS.pool.root.1
[2025-10-15 00:15:09] -rw-------. 1 boinc boinc   1003520 Oct 15 00:15 result.tar.gz
00:15:10 (376884): run_atlas exited; CPU time 25251.718066
00:15:10 (376884): called boinc_finish(0)

</stderr_txt>
]]>

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